Wall clock time and date at job start Mon Mar 30 2020 07:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47559 * 2 1 4 4 N 1.46896 * 109.46823 * 239.99989 * 2 1 3 5 5 C 1.46903 * 111.00084 * 85.00404 * 4 2 1 6 6 H 1.09004 * 110.01262 * 326.38883 * 5 4 2 7 7 C 1.54266 * 110.03391 * 87.83061 * 5 4 2 8 8 C 1.54893 * 104.19500 * 142.89921 * 7 5 4 9 9 C 1.54887 * 102.74533 * 322.05712 * 8 7 5 10 10 H 1.09001 * 110.48816 * 279.26329 * 9 8 7 11 11 C 1.50704 * 110.48381 * 156.62255 * 9 8 7 12 12 H 1.07994 * 120.00152 * 245.22154 * 11 9 8 13 13 C 1.37877 * 119.99883 * 65.22575 * 11 9 8 14 14 N 1.31516 * 120.00056 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 120.00070 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46736 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46715 * 119.99813 * 15 13 11 18 18 H 1.48500 * 109.47090 * 239.99889 * 15 13 11 19 19 C 1.53872 * 110.03371 * 205.00134 * 5 4 2 20 20 C 1.50701 * 109.46882 * 120.00475 * 2 1 3 21 21 C 1.33641 * 122.74816 * 274.72426 * 20 2 1 22 22 S 1.76191 * 107.92550 * 179.97438 * 21 20 2 23 23 C 1.70983 * 90.28376 * 0.27811 * 22 21 20 24 24 N 1.29024 * 110.16391 * 359.83961 * 23 22 21 25 25 H 1.08997 * 109.47097 * 59.99702 * 1 2 3 26 26 H 1.08996 * 109.47559 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46720 * 300.00307 * 1 2 3 28 28 H 1.00906 * 111.00517 * 321.05188 * 4 2 1 29 29 H 1.09002 * 110.48438 * 261.57539 * 7 5 4 30 30 H 1.08998 * 110.48431 * 24.08367 * 7 5 4 31 31 H 1.09001 * 110.75228 * 203.74448 * 8 7 5 32 32 H 1.09000 * 110.75571 * 80.37081 * 8 7 5 33 33 H 0.97004 * 120.00107 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.03622 * 121.42650 * 19 5 4 35 35 H 1.09003 * 110.07498 * 0.02562 * 19 5 4 36 36 H 1.07999 * 126.03426 * 0.04807 * 21 20 2 37 37 H 1.07998 * 124.91841 * 179.83568 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 1 1.2754 0.9528 -2.2863 7 6 3.4467 0.9423 -2.3748 8 6 3.7914 1.0446 -3.8814 9 6 3.2814 -0.3065 -4.4412 10 1 4.0074 -1.0969 -4.2505 11 6 2.9989 -0.1929 -5.9171 12 1 1.9883 -0.2974 -6.2831 13 6 4.0309 0.0442 -6.8003 14 7 5.2616 0.1718 -6.3545 15 14 3.6809 0.1843 -8.6299 16 1 2.2266 0.0045 -8.8708 17 1 4.1002 1.5245 -9.1128 18 1 4.4375 -0.8642 -9.3603 19 6 1.9774 -0.5714 -3.6607 20 6 2.0323 -0.7105 1.2304 21 6 2.1860 -0.0967 2.4076 22 16 2.7879 -1.2828 3.5631 23 6 2.7810 -2.4842 2.3465 24 7 2.3621 -1.9864 1.2322 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.4494 -1.4979 -1.4101 29 1 3.3629 1.9358 -1.9343 30 1 4.1987 0.3547 -1.8483 31 1 4.8675 1.1411 -4.0257 32 1 3.2623 1.8784 -4.3429 33 1 5.9877 0.3383 -6.9759 34 1 1.1198 -0.2260 -4.2382 35 1 1.8792 -1.6359 -3.4477 36 1 1.9768 0.9424 2.6143 37 1 3.0834 -3.5110 2.4899 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378856652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:21 Heat of formation + Delta-G solvation = 34.620255 kcal Electronic energy + Delta-G solvation = -17886.137040 eV Core-core repulsion = 15175.573045 eV Total energy + Delta-G solvation = -2710.563994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.99519 -37.78575 -35.02302 -32.37102 -30.63608 -28.78220 -28.03439 -26.23906 -25.19044 -23.55059 -22.57792 -19.59027 -19.22432 -18.90774 -17.91503 -16.40591 -15.96394 -14.98564 -14.90997 -14.53880 -14.29583 -13.75479 -13.42369 -13.29761 -13.23579 -12.53426 -12.24453 -12.22641 -11.79401 -11.41526 -11.18162 -10.96590 -10.64430 -10.46498 -10.32593 -10.01377 -9.83315 -9.59738 -9.48573 -9.45756 -9.08090 -8.85250 -8.67269 -8.28146 -7.92028 -5.92572 -3.94971 0.69245 1.35838 1.67608 2.85550 3.33882 3.41824 3.45519 4.20708 4.49893 4.51804 4.92758 5.14394 5.18969 5.24494 5.39063 5.42009 5.61985 5.65460 5.74912 5.86670 5.99466 6.06250 6.22044 6.42273 6.57891 6.73863 6.81368 6.96525 7.13547 7.27275 7.44146 7.59458 7.79142 7.83967 7.88875 7.98986 8.15720 8.55326 9.08447 9.68432 11.16900 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042286 B = 0.003716 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.999386 B = 7533.532317 C = 7723.134778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.155 3.845 3 H 0.092 0.908 4 N -0.664 5.664 5 C 0.084 3.916 6 H 0.034 0.966 7 C -0.116 4.116 8 C -0.100 4.100 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.512 4.512 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.116 4.116 20 C 0.092 3.908 21 C -0.261 4.261 22 S 0.089 5.911 23 C 0.022 3.978 24 N -0.440 5.440 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.343 0.657 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.258 0.742 34 H 0.053 0.947 35 H 0.049 0.951 36 H 0.174 0.826 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.044 -0.838 19.418 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.041 3.959 3 H 0.110 0.890 4 N -0.295 5.295 5 C -0.025 4.025 6 H 0.052 0.948 7 C -0.154 4.154 8 C -0.138 4.138 9 C 0.034 3.966 10 H 0.050 0.950 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.154 4.154 20 C -0.040 4.040 21 C -0.400 4.400 22 S 0.341 5.659 23 C -0.277 4.277 24 N -0.152 5.152 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.163 0.837 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.191 0.809 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.955 -1.103 20.094 20.987 hybrid contribution -1.259 0.607 -1.860 2.326 sum -7.214 -0.496 18.234 19.615 Atomic orbital electron populations 1.22490 0.96208 1.02494 1.02326 1.20078 0.92191 0.96440 0.87194 0.89023 1.60596 1.56930 1.09190 1.02834 1.22322 0.97010 0.93433 0.89766 0.94819 1.22518 0.96122 0.97262 0.99519 1.22413 1.01190 0.99801 0.90409 1.19374 0.90634 0.93402 0.93220 0.94997 1.21271 0.93539 1.48612 0.91627 0.92807 1.24983 0.95176 0.95392 0.98428 1.69982 0.99147 1.49454 1.34199 0.86626 0.78291 0.77535 0.86063 1.19883 1.21152 1.21120 1.22454 1.01438 0.97720 0.93803 1.20401 0.99463 0.88988 0.95184 1.26732 1.12342 1.04826 0.96095 1.83918 1.61279 1.03462 1.17282 1.28496 1.03800 1.04556 0.90816 1.66085 1.11993 1.12076 1.25089 0.91676 0.92180 0.92311 0.83688 0.94438 0.91731 0.91629 0.93720 0.93249 0.92863 0.93222 0.80859 0.78647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.13 37.16 0.34 -1.66 16 2 C 0.15 2.08 2.77 -68.87 -0.19 1.89 16 3 H 0.09 1.22 7.77 -51.93 -0.40 0.82 16 4 N -0.66 -10.81 5.70 -99.78 -0.57 -11.38 16 5 C 0.08 1.52 3.02 -66.59 -0.20 1.32 16 6 H 0.03 0.58 7.16 -51.93 -0.37 0.20 16 7 C -0.12 -2.30 6.40 -25.07 -0.16 -2.46 16 8 C -0.10 -2.38 5.75 -24.74 -0.14 -2.52 16 9 C 0.05 1.34 2.72 -90.11 -0.25 1.09 16 10 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.51 -14.32 8.46 -34.44 -0.29 -14.61 16 12 H 0.05 1.49 7.54 -52.49 -0.40 1.09 16 13 C 0.06 1.74 5.35 -17.82 -0.10 1.65 16 14 N -0.89 -26.13 12.29 55.43 0.68 -25.45 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C -0.12 -2.44 6.04 -25.61 -0.15 -2.60 16 20 C 0.09 1.22 5.80 -84.22 -0.49 0.73 16 21 C -0.26 -2.83 11.14 29.12 0.32 -2.50 16 22 S 0.09 0.82 23.22 -107.50 -2.50 -1.68 16 23 C 0.02 0.24 12.23 51.58 0.63 0.87 16 24 N -0.44 -6.16 10.14 -11.89 -0.12 -6.28 16 25 H 0.06 0.75 7.46 -51.93 -0.39 0.36 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.34 5.54 7.75 -39.29 -0.30 5.24 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.34 8.05 -51.93 -0.42 0.93 16 31 H 0.06 1.71 7.55 -51.93 -0.39 1.32 16 32 H 0.04 1.08 8.05 -51.93 -0.42 0.67 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.05 1.12 7.66 -51.93 -0.40 0.72 16 35 H 0.05 1.01 7.47 -51.93 -0.39 0.62 16 36 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.20 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -30.36 314.48 -9.01 -39.37 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.55 Total: 2.90 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -0.68 Total: -18.81 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: -0.01 Total: -43.11 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.50 Total: -1.68 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.36 -9.01 -39.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378856652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.988 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds