Wall clock time and date at job start Mon Mar 30 2020 07:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47559 * 2 1 4 4 N 1.46896 * 109.46823 * 239.99989 * 2 1 3 5 5 C 1.46903 * 111.00084 * 85.00404 * 4 2 1 6 6 H 1.09004 * 110.01262 * 326.38883 * 5 4 2 7 7 C 1.54266 * 110.03391 * 87.83061 * 5 4 2 8 8 C 1.54893 * 104.19500 * 142.89921 * 7 5 4 9 9 C 1.54887 * 102.74533 * 322.05712 * 8 7 5 10 10 H 1.09001 * 110.48816 * 279.26329 * 9 8 7 11 11 C 1.50704 * 110.48381 * 156.62255 * 9 8 7 12 12 H 1.07994 * 120.00152 * 245.22154 * 11 9 8 13 13 C 1.37877 * 119.99883 * 65.22575 * 11 9 8 14 14 N 1.31516 * 120.00056 * 359.97438 * 13 11 9 15 15 Si 1.86809 * 120.00070 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.46736 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46715 * 119.99813 * 15 13 11 18 18 H 1.48500 * 109.47090 * 239.99889 * 15 13 11 19 19 C 1.53872 * 110.03371 * 205.00134 * 5 4 2 20 20 C 1.50701 * 109.46882 * 120.00475 * 2 1 3 21 21 C 1.33641 * 122.74816 * 274.72426 * 20 2 1 22 22 S 1.76191 * 107.92550 * 179.97438 * 21 20 2 23 23 C 1.70983 * 90.28376 * 0.27811 * 22 21 20 24 24 N 1.29024 * 110.16391 * 359.83961 * 23 22 21 25 25 H 1.08997 * 109.47097 * 59.99702 * 1 2 3 26 26 H 1.08996 * 109.47559 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46720 * 300.00307 * 1 2 3 28 28 H 1.00906 * 111.00517 * 321.05188 * 4 2 1 29 29 H 1.09002 * 110.48438 * 261.57539 * 7 5 4 30 30 H 1.08998 * 110.48431 * 24.08367 * 7 5 4 31 31 H 1.09001 * 110.75228 * 203.74448 * 8 7 5 32 32 H 1.09000 * 110.75571 * 80.37081 * 8 7 5 33 33 H 0.97004 * 120.00107 * 179.97438 * 14 13 11 34 34 H 1.09003 * 110.03622 * 121.42650 * 19 5 4 35 35 H 1.09003 * 110.07498 * 0.02562 * 19 5 4 36 36 H 1.07999 * 126.03426 * 0.04807 * 21 20 2 37 37 H 1.07998 * 124.91841 * 179.83568 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 2.0824 0.2226 -2.3469 6 1 1.2754 0.9528 -2.2863 7 6 3.4467 0.9423 -2.3748 8 6 3.7914 1.0446 -3.8814 9 6 3.2814 -0.3065 -4.4412 10 1 4.0074 -1.0969 -4.2505 11 6 2.9989 -0.1929 -5.9171 12 1 1.9883 -0.2974 -6.2831 13 6 4.0309 0.0442 -6.8003 14 7 5.2616 0.1718 -6.3545 15 14 3.6809 0.1843 -8.6299 16 1 2.2266 0.0045 -8.8708 17 1 4.1002 1.5245 -9.1128 18 1 4.4375 -0.8642 -9.3603 19 6 1.9774 -0.5714 -3.6607 20 6 2.0323 -0.7105 1.2304 21 6 2.1860 -0.0967 2.4076 22 16 2.7879 -1.2828 3.5631 23 6 2.7810 -2.4842 2.3465 24 7 2.3621 -1.9864 1.2322 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.4494 -1.4979 -1.4101 29 1 3.3629 1.9358 -1.9343 30 1 4.1987 0.3547 -1.8483 31 1 4.8675 1.1411 -4.0257 32 1 3.2623 1.8784 -4.3429 33 1 5.9877 0.3383 -6.9759 34 1 1.1198 -0.2260 -4.2382 35 1 1.8792 -1.6359 -3.4477 36 1 1.9768 0.9424 2.6143 37 1 3.0834 -3.5110 2.4899 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378856652.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:21 Heat of formation + Delta-G solvation = 15.361800 kcal Electronic energy + Delta-G solvation = -17886.972149 eV Core-core repulsion = 15175.573045 eV Total energy + Delta-G solvation = -2711.399103 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.90428 -39.31528 -36.43372 -34.31072 -31.85007 -30.00809 -29.73730 -27.70739 -26.27384 -25.38374 -23.60093 -21.16782 -20.69149 -20.20915 -18.86004 -18.45011 -16.98372 -16.55396 -16.23952 -15.97788 -15.50500 -15.06612 -14.90760 -14.53329 -14.11075 -14.04202 -13.69930 -13.47955 -13.18628 -12.97208 -12.67841 -12.47745 -12.36252 -12.19660 -11.87197 -11.64776 -11.54681 -11.40222 -10.99001 -10.77146 -10.43736 -10.42777 -10.29098 -9.66747 -9.16666 -8.09318 -6.19515 -0.10430 0.60949 0.88029 1.40576 1.41816 1.53643 1.97615 2.44775 3.20708 3.28071 3.44677 3.96926 4.02285 4.16373 4.26384 4.34517 4.41057 4.49195 4.60567 4.69489 4.81964 4.84417 4.93021 5.00910 5.09708 5.15631 5.24803 5.28368 5.37211 5.45556 5.53412 5.66797 5.94804 6.02704 6.27889 6.42538 6.58703 6.92662 6.99645 7.47814 8.99815 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.042286 B = 0.003716 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.999386 B = 7533.532317 C = 7723.134778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.154 3.846 3 H 0.094 0.906 4 N -0.674 5.674 5 C 0.099 3.901 6 H 0.054 0.946 7 C -0.103 4.103 8 C -0.093 4.093 9 C 0.043 3.957 10 H -0.010 1.010 11 C -0.531 4.531 12 H 0.054 0.946 13 C 0.009 3.991 14 N -0.922 5.922 15 Si 0.954 3.046 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.282 1.282 19 C -0.107 4.107 20 C 0.065 3.935 21 C -0.265 4.265 22 S 0.146 5.854 23 C 0.008 3.992 24 N -0.484 5.484 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.343 0.657 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.038 0.962 33 H 0.259 0.741 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.195 0.805 37 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.356 -0.215 20.861 22.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.041 3.959 3 H 0.112 0.888 4 N -0.305 5.305 5 C -0.010 4.010 6 H 0.072 0.928 7 C -0.141 4.141 8 C -0.131 4.131 9 C 0.024 3.976 10 H 0.009 0.991 11 C -0.569 4.569 12 H 0.072 0.928 13 C -0.189 4.189 14 N -0.561 5.561 15 Si 0.780 3.220 16 H -0.189 1.189 17 H -0.206 1.206 18 H -0.208 1.208 19 C -0.145 4.145 20 C -0.067 4.067 21 C -0.404 4.404 22 S 0.398 5.602 23 C -0.289 4.289 24 N -0.197 5.197 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.163 0.837 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.212 0.788 37 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -7.280 -0.487 21.562 22.763 hybrid contribution -0.796 0.370 -2.200 2.368 sum -8.075 -0.117 19.362 20.979 Atomic orbital electron populations 1.22390 0.94662 1.02333 1.03211 1.20139 0.93460 0.96214 0.86073 0.88786 1.60479 1.57932 1.09105 1.03023 1.22036 0.96402 0.93475 0.89116 0.92774 1.22373 0.96789 0.98827 0.96158 1.22206 0.98876 0.98548 0.93509 1.19352 0.92057 0.92971 0.93232 0.99135 1.21647 0.93626 1.48466 0.93155 0.92790 1.25807 0.94953 0.95073 1.03089 1.70123 1.00020 1.50248 1.35723 0.85564 0.78482 0.77576 0.80386 1.18930 1.20576 1.20806 1.22296 0.98803 0.98517 0.94905 1.20390 1.01261 0.89270 0.95787 1.27067 1.11176 1.06202 0.95970 1.83713 1.59593 1.01575 1.15297 1.28928 1.03069 1.06094 0.90855 1.66071 1.13741 1.12909 1.27011 0.91727 0.92846 0.90387 0.83693 0.91787 0.93053 0.94839 0.94365 0.93220 0.92666 0.93025 0.78754 0.76456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 9.13 71.98 0.66 -2.78 16 2 C 0.15 3.88 2.77 44.17 0.12 4.00 16 3 H 0.09 2.28 7.77 -2.39 -0.02 2.26 16 4 N -0.67 -21.37 5.70 -469.61 -2.68 -24.04 16 5 C 0.10 3.49 3.02 45.64 0.14 3.63 16 6 H 0.05 1.72 7.16 -2.39 -0.02 1.70 16 7 C -0.10 -4.05 6.40 31.67 0.20 -3.85 16 8 C -0.09 -4.55 5.75 31.89 0.18 -4.37 16 9 C 0.04 2.24 2.72 -10.46 -0.03 2.21 16 10 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 11 C -0.53 -30.26 8.46 25.60 0.22 -30.05 16 12 H 0.05 3.00 7.54 -2.91 -0.02 2.98 16 13 C 0.01 0.52 5.35 84.65 0.45 0.97 16 14 N -0.92 -55.71 12.29 21.45 0.26 -55.45 16 15 Si 0.95 44.77 29.54 68.60 2.03 46.80 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 C -0.11 -4.52 6.04 31.32 0.19 -4.33 16 20 C 0.07 1.63 5.80 41.52 0.24 1.87 16 21 C -0.26 -5.07 11.14 66.78 0.74 -4.33 16 22 S 0.15 2.30 23.22 -56.49 -1.31 0.99 16 23 C 0.01 0.17 12.23 130.65 1.60 1.76 16 24 N -0.48 -13.08 10.14 -191.55 -1.94 -15.02 16 25 H 0.06 1.33 7.46 -2.39 -0.02 1.31 16 26 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.34 10.91 7.75 -89.69 -0.70 10.21 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.05 2.15 8.05 -2.39 -0.02 2.13 16 31 H 0.03 1.81 7.55 -2.39 -0.02 1.79 16 32 H 0.04 1.88 8.05 -2.39 -0.02 1.86 16 33 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 34 H 0.05 2.28 7.66 -2.39 -0.02 2.26 16 35 H 0.05 2.12 7.47 -2.39 -0.02 2.10 16 36 H 0.20 2.69 8.06 -2.91 -0.02 2.67 16 37 H 0.22 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -66.86 314.48 1.44 -65.43 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.36 Total: 16.54 kcal Atomic # 6 Polarization: -39.96 SS G_CDS: 4.72 Total: -35.24 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -4.36 Total: -94.51 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.31 Total: 0.99 kcal Total: -66.86 1.44 -65.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378856652.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.789 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds