Wall clock time and date at job start Mon Mar 30 2020 07:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46821 * 2 1 4 4 N 1.46902 * 109.47452 * 240.00018 * 2 1 3 5 5 C 1.46894 * 110.99895 * 84.99768 * 4 2 1 6 6 H 1.09000 * 110.67772 * 31.76679 * 5 4 2 7 7 C 1.54892 * 110.75527 * 268.32662 * 5 4 2 8 8 C 1.54266 * 104.19777 * 203.74384 * 7 5 4 9 9 C 1.53879 * 106.59720 * 23.61461 * 8 7 5 10 10 H 1.09002 * 110.02683 * 240.71160 * 9 8 7 11 11 C 1.50689 * 110.03347 * 119.28460 * 9 8 7 12 12 H 1.08001 * 119.99926 * 242.83073 * 11 9 8 13 13 C 1.37880 * 120.00605 * 62.83058 * 11 9 8 14 14 N 1.31511 * 119.99499 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00504 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46929 * 119.99982 * 15 13 11 18 18 H 1.48495 * 109.47277 * 240.00352 * 15 13 11 19 19 C 1.54267 * 106.59629 * 359.97438 * 9 8 7 20 20 C 1.50700 * 109.47395 * 119.99565 * 2 1 3 21 21 C 1.33644 * 126.03938 * 260.00763 * 20 2 1 22 22 N 1.31771 * 114.50041 * 180.02562 * 21 20 2 23 23 C 1.29028 * 117.12878 * 359.97438 * 22 21 20 24 24 S 1.70979 * 110.16576 * 359.97438 * 23 22 21 25 25 H 1.08993 * 109.47717 * 60.00618 * 1 2 3 26 26 H 1.09008 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47285 * 299.99917 * 1 2 3 28 28 H 1.00900 * 110.99606 * 321.04139 * 4 2 1 29 29 H 1.08999 * 110.48715 * 322.42455 * 7 5 4 30 30 H 1.09004 * 110.48423 * 85.06523 * 7 5 4 31 31 H 1.08993 * 110.03364 * 264.32617 * 8 7 5 32 32 H 1.09004 * 110.07250 * 142.91782 * 8 7 5 33 33 H 0.97001 * 119.99722 * 179.97438 * 14 13 11 34 34 H 1.09004 * 110.48372 * 217.71301 * 19 9 8 35 35 H 1.09004 * 110.59326 * 95.13127 * 19 9 8 36 36 H 1.08002 * 122.74545 * 359.72316 * 21 20 2 37 37 H 1.07997 * 124.91642 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 1 2.3077 1.2371 -2.0181 7 6 0.7606 0.1833 -3.1532 8 6 1.1645 0.6552 -4.5652 9 6 2.6698 0.3705 -4.7099 10 1 3.2105 1.3006 -4.8854 11 6 2.9069 -0.5877 -5.8485 12 1 3.3411 -1.5577 -5.6564 13 6 2.5693 -0.2263 -7.1355 14 7 2.0401 0.9547 -7.3694 15 14 2.8639 -1.4139 -8.5470 16 1 3.4646 -2.6667 -8.0226 17 1 1.5720 -1.7247 -9.2101 18 1 3.7886 -0.7948 -9.5301 19 6 3.1281 -0.2639 -3.3805 20 6 2.0323 -0.7103 1.2305 21 6 2.4713 -0.1279 2.3504 22 7 2.8591 -0.9689 3.2879 23 6 2.7713 -2.2283 3.0214 24 16 2.1439 -2.4554 1.4472 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.4496 -1.4980 -1.4100 29 1 0.3654 -0.8319 -3.1887 30 1 0.0282 0.8637 -2.7185 31 1 0.9747 1.7233 -4.6705 32 1 0.6056 0.1008 -5.3191 33 1 1.8029 1.2091 -8.2749 34 1 4.1235 0.0900 -3.1121 35 1 3.1170 -1.3516 -3.4508 36 1 2.5098 0.9442 2.4750 37 1 3.0526 -3.0238 3.6954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378859705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:50 Heat of formation + Delta-G solvation = 30.074637 kcal Electronic energy + Delta-G solvation = -17833.303884 eV Core-core repulsion = 15122.542777 eV Total energy + Delta-G solvation = -2710.761107 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.70374 -38.20170 -35.52251 -32.50207 -30.57640 -28.79744 -28.04504 -26.18552 -25.40830 -23.65740 -21.86397 -20.52452 -19.57558 -18.89702 -17.94511 -16.39999 -15.90432 -15.34235 -14.68396 -14.45398 -14.24792 -13.97254 -13.81593 -13.53993 -13.12535 -12.40805 -12.32782 -12.23843 -11.76188 -11.48565 -11.13996 -11.13233 -10.95866 -10.59451 -10.46689 -10.26267 -9.83054 -9.69529 -9.61552 -9.27386 -9.13935 -8.95470 -8.66789 -8.36461 -8.08626 -5.98735 -4.01138 0.70405 1.36289 1.78327 2.80254 3.30322 3.38711 3.42752 4.19811 4.38529 4.47385 4.76646 4.99500 5.15454 5.19987 5.32181 5.47251 5.54072 5.56109 5.71304 5.75373 5.89400 5.99858 6.09789 6.22074 6.47861 6.61521 6.71133 6.82700 7.03694 7.10594 7.36647 7.44431 7.58093 7.65195 7.74906 7.94758 8.02400 8.51093 9.03093 9.62712 11.10649 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037677 B = 0.003953 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.990323 B = 7081.225643 C = 7426.286521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.156 3.844 3 H 0.097 0.903 4 N -0.676 5.676 5 C 0.082 3.918 6 H 0.075 0.925 7 C -0.151 4.151 8 C -0.089 4.089 9 C 0.043 3.957 10 H 0.026 0.974 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.059 3.941 14 N -0.891 5.891 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.098 4.098 20 C -0.183 4.183 21 C 0.017 3.983 22 N -0.471 5.471 23 C -0.006 4.006 24 S 0.146 5.854 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.341 0.659 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.258 0.742 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.171 0.829 37 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 -3.856 17.270 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.043 3.957 3 H 0.115 0.885 4 N -0.306 5.306 5 C -0.027 4.027 6 H 0.093 0.907 7 C -0.190 4.190 8 C -0.128 4.128 9 C 0.024 3.976 10 H 0.044 0.956 11 C -0.547 4.547 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.715 3.285 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.137 4.137 20 C -0.305 4.305 21 C -0.134 4.134 22 N -0.184 5.184 23 C -0.303 4.303 24 S 0.398 5.602 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.160 0.840 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.188 0.812 37 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.412 17.250 18.001 hybrid contribution -0.785 0.400 -0.915 1.270 sum -3.430 -4.012 16.335 17.167 Atomic orbital electron populations 1.22653 0.95755 1.02598 1.03029 1.19964 0.92643 0.96821 0.86270 0.88507 1.60731 1.56389 1.09802 1.03676 1.22761 0.96446 0.94690 0.88839 0.90725 1.23156 0.96540 1.00026 0.99243 1.21995 0.99807 0.98654 0.92320 1.19261 0.91621 0.95939 0.90793 0.95578 1.21304 1.40640 1.01209 0.91546 0.92658 1.24989 0.95342 0.95125 0.98728 1.69992 1.42905 1.19590 1.20451 0.86616 0.77797 0.81446 0.82635 1.19788 1.21174 1.21118 1.22429 0.95958 1.00541 0.94727 1.26168 1.07593 0.95817 1.00907 1.21662 1.01939 1.00921 0.88886 1.66287 1.17585 1.01782 1.32780 1.28305 1.05332 0.97097 0.99589 1.84069 1.58116 1.05502 1.12478 0.90877 0.92364 0.92114 0.83972 0.92622 0.93724 0.94493 0.91938 0.93240 0.93623 0.92205 0.81152 0.78920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 8.98 37.15 0.33 -1.57 16 2 C 0.16 1.85 3.04 -68.87 -0.21 1.64 16 3 H 0.10 1.14 7.43 -51.92 -0.39 0.75 16 4 N -0.68 -9.51 5.96 -98.89 -0.59 -10.10 16 5 C 0.08 1.35 3.19 -65.73 -0.21 1.14 16 6 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 7 C -0.15 -2.63 5.54 -25.07 -0.14 -2.77 16 8 C -0.09 -2.01 5.60 -25.61 -0.14 -2.15 16 9 C 0.04 1.04 2.82 -90.66 -0.26 0.78 16 10 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 11 C -0.51 -13.80 8.32 -34.44 -0.29 -14.09 16 12 H 0.06 1.50 7.54 -52.49 -0.40 1.10 16 13 C 0.06 1.64 5.09 -17.82 -0.09 1.54 16 14 N -0.89 -25.48 12.44 55.43 0.69 -24.79 16 15 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C -0.10 -1.99 6.03 -25.08 -0.15 -2.14 16 20 C -0.18 -2.15 5.52 -35.92 -0.20 -2.35 16 21 C 0.02 0.20 11.24 -19.19 -0.22 -0.01 16 22 N -0.47 -5.93 10.54 -15.75 -0.17 -6.09 16 23 C -0.01 -0.06 12.23 51.58 0.63 0.57 16 24 S 0.15 1.54 23.02 -107.50 -2.47 -0.93 16 25 H 0.07 0.82 5.86 -51.93 -0.30 0.51 16 26 H 0.06 0.60 8.13 -51.92 -0.42 0.18 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.34 4.69 7.95 -39.29 -0.31 4.38 16 29 H 0.06 0.96 7.77 -51.93 -0.40 0.55 16 30 H 0.04 0.70 6.67 -51.93 -0.35 0.35 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.06 1.58 7.26 -51.93 -0.38 1.20 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 36 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 311.17 15.07 4.69 4.69 Total: -1.00 -29.10 311.17 -9.21 -38.32 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.40 Total: 2.12 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -0.94 Total: -19.41 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: -0.07 Total: -40.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.10 -9.21 -38.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378859705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.390 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds