Wall clock time and date at job start Mon Mar 30 2020 07:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.46821 * 2 1 4 4 N 1.46902 * 109.47452 * 240.00018 * 2 1 3 5 5 C 1.46894 * 110.99895 * 84.99768 * 4 2 1 6 6 H 1.09000 * 110.67772 * 31.76679 * 5 4 2 7 7 C 1.54892 * 110.75527 * 268.32662 * 5 4 2 8 8 C 1.54266 * 104.19777 * 203.74384 * 7 5 4 9 9 C 1.53879 * 106.59720 * 23.61461 * 8 7 5 10 10 H 1.09002 * 110.02683 * 240.71160 * 9 8 7 11 11 C 1.50689 * 110.03347 * 119.28460 * 9 8 7 12 12 H 1.08001 * 119.99926 * 242.83073 * 11 9 8 13 13 C 1.37880 * 120.00605 * 62.83058 * 11 9 8 14 14 N 1.31511 * 119.99499 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 120.00504 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46942 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.46929 * 119.99982 * 15 13 11 18 18 H 1.48495 * 109.47277 * 240.00352 * 15 13 11 19 19 C 1.54267 * 106.59629 * 359.97438 * 9 8 7 20 20 C 1.50700 * 109.47395 * 119.99565 * 2 1 3 21 21 C 1.33644 * 126.03938 * 260.00763 * 20 2 1 22 22 N 1.31771 * 114.50041 * 180.02562 * 21 20 2 23 23 C 1.29028 * 117.12878 * 359.97438 * 22 21 20 24 24 S 1.70979 * 110.16576 * 359.97438 * 23 22 21 25 25 H 1.08993 * 109.47717 * 60.00618 * 1 2 3 26 26 H 1.09008 * 109.46821 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47285 * 299.99917 * 1 2 3 28 28 H 1.00900 * 110.99606 * 321.04139 * 4 2 1 29 29 H 1.08999 * 110.48715 * 322.42455 * 7 5 4 30 30 H 1.09004 * 110.48423 * 85.06523 * 7 5 4 31 31 H 1.08993 * 110.03364 * 264.32617 * 8 7 5 32 32 H 1.09004 * 110.07250 * 142.91782 * 8 7 5 33 33 H 0.97001 * 119.99722 * 179.97438 * 14 13 11 34 34 H 1.09004 * 110.48372 * 217.71301 * 19 9 8 35 35 H 1.09004 * 110.59326 * 95.13127 * 19 9 8 36 36 H 1.08002 * 122.74545 * 359.72316 * 21 20 2 37 37 H 1.07997 * 124.91642 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2226 -2.3468 6 1 2.3077 1.2371 -2.0181 7 6 0.7606 0.1833 -3.1532 8 6 1.1645 0.6552 -4.5652 9 6 2.6698 0.3705 -4.7099 10 1 3.2105 1.3006 -4.8854 11 6 2.9069 -0.5877 -5.8485 12 1 3.3411 -1.5577 -5.6564 13 6 2.5693 -0.2263 -7.1355 14 7 2.0401 0.9547 -7.3694 15 14 2.8639 -1.4139 -8.5470 16 1 3.4646 -2.6667 -8.0226 17 1 1.5720 -1.7247 -9.2101 18 1 3.7886 -0.7948 -9.5301 19 6 3.1281 -0.2639 -3.3805 20 6 2.0323 -0.7103 1.2305 21 6 2.4713 -0.1279 2.3504 22 7 2.8591 -0.9689 3.2879 23 6 2.7713 -2.2283 3.0214 24 16 2.1439 -2.4554 1.4472 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.4496 -1.4980 -1.4100 29 1 0.3654 -0.8319 -3.1887 30 1 0.0282 0.8637 -2.7185 31 1 0.9747 1.7233 -4.6705 32 1 0.6056 0.1008 -5.3191 33 1 1.8029 1.2091 -8.2749 34 1 4.1235 0.0900 -3.1121 35 1 3.1170 -1.3516 -3.4508 36 1 2.5098 0.9442 2.4750 37 1 3.0526 -3.0238 3.6954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378859705.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:50 Heat of formation + Delta-G solvation = 12.130959 kcal Electronic energy + Delta-G solvation = -17834.081980 eV Core-core repulsion = 15122.542777 eV Total energy + Delta-G solvation = -2711.539203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.58407 -39.58020 -36.88378 -34.37954 -31.85482 -29.85692 -29.66664 -27.70382 -26.38116 -25.42221 -22.83852 -21.67783 -20.88024 -20.56830 -18.84830 -18.29818 -17.06350 -16.67159 -16.44840 -15.59904 -15.51559 -15.10337 -14.74902 -14.53342 -14.37254 -14.08513 -13.80578 -13.45204 -13.15387 -12.88150 -12.66156 -12.49028 -12.34815 -12.28300 -11.99824 -11.81265 -11.57217 -11.37844 -11.01082 -10.68269 -10.52321 -10.44378 -10.09002 -9.80495 -9.27846 -8.10405 -6.19411 -0.12258 0.55351 0.95712 1.39630 1.41965 1.53058 1.94725 2.44397 3.14726 3.21083 3.57748 3.83802 4.02540 4.08161 4.20819 4.27873 4.36424 4.46714 4.65312 4.70176 4.85084 4.87091 4.92897 5.00272 5.07323 5.19815 5.24992 5.26751 5.30193 5.47861 5.51553 5.69471 5.96440 5.99675 6.18588 6.42138 6.47941 6.82508 6.93645 7.47844 8.98514 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037677 B = 0.003953 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.990323 B = 7081.225643 C = 7426.286521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.159 3.841 3 H 0.100 0.900 4 N -0.677 5.677 5 C 0.101 3.899 6 H 0.083 0.917 7 C -0.135 4.135 8 C -0.082 4.082 9 C 0.033 3.967 10 H -0.009 1.009 11 C -0.526 4.526 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.921 5.921 15 Si 0.950 3.050 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.091 4.091 20 C -0.199 4.199 21 C 0.011 3.989 22 N -0.501 5.501 23 C 0.000 4.000 24 S 0.157 5.843 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.345 0.655 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.022 0.978 32 H 0.029 0.971 33 H 0.259 0.741 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.182 0.818 37 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -4.950 18.730 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.047 3.953 3 H 0.118 0.882 4 N -0.307 5.307 5 C -0.009 4.009 6 H 0.101 0.899 7 C -0.174 4.174 8 C -0.121 4.121 9 C 0.014 3.986 10 H 0.010 0.990 11 C -0.564 4.564 12 H 0.069 0.931 13 C -0.189 4.189 14 N -0.560 5.560 15 Si 0.776 3.224 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.130 4.130 20 C -0.321 4.321 21 C -0.140 4.140 22 N -0.214 5.214 23 C -0.297 4.297 24 S 0.410 5.590 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.165 0.835 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.199 0.801 37 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -3.047 -5.519 18.726 19.759 hybrid contribution -0.618 0.720 -1.330 1.634 sum -3.665 -4.799 17.396 18.414 Atomic orbital electron populations 1.22578 0.94536 1.02923 1.03393 1.19957 0.93558 0.96700 0.85097 0.88247 1.60586 1.57235 1.09553 1.03322 1.22427 0.94234 0.95357 0.88844 0.89923 1.23037 0.97685 1.00803 0.95916 1.21776 0.98143 0.97336 0.94807 1.19273 0.92663 0.94190 0.92425 0.99044 1.21662 1.40373 1.01504 0.92838 0.93064 1.25744 0.95206 0.96674 1.01237 1.70110 1.43827 1.21176 1.20920 0.85625 0.77747 0.79535 0.79495 1.19089 1.20675 1.20845 1.22253 0.97095 0.99706 0.93909 1.26137 1.08519 0.96582 1.00851 1.21906 1.01566 1.01655 0.88885 1.66340 1.18941 1.02692 1.33472 1.28863 1.03748 0.97222 0.99831 1.84029 1.57841 1.04630 1.12531 0.91313 0.92066 0.90886 0.83534 0.91945 0.91108 0.95895 0.95254 0.93254 0.93706 0.92860 0.80063 0.75999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 8.98 71.98 0.65 -2.55 16 2 C 0.16 3.38 3.04 44.17 0.13 3.52 16 3 H 0.10 2.08 7.43 -2.38 -0.02 2.06 16 4 N -0.68 -17.58 5.96 -466.76 -2.78 -20.36 16 5 C 0.10 3.20 3.19 46.20 0.15 3.34 16 6 H 0.08 2.53 7.44 -2.39 -0.02 2.51 16 7 C -0.14 -4.53 5.54 31.67 0.18 -4.36 16 8 C -0.08 -3.75 5.60 31.32 0.18 -3.57 16 9 C 0.03 1.67 2.82 -10.82 -0.03 1.64 16 10 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 11 C -0.53 -29.10 8.32 25.60 0.21 -28.89 16 12 H 0.05 2.81 7.54 -2.91 -0.02 2.78 16 13 C 0.01 0.54 5.09 84.66 0.43 0.97 16 14 N -0.92 -53.97 12.44 21.45 0.27 -53.70 16 15 Si 0.95 43.96 29.54 68.60 2.03 45.98 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 C -0.09 -3.68 6.03 31.66 0.19 -3.49 16 20 C -0.20 -4.24 5.52 24.64 0.14 -4.10 16 21 C 0.01 0.24 11.24 83.66 0.94 1.18 16 22 N -0.50 -11.61 10.54 -203.75 -2.15 -13.76 16 23 C 0.00 0.00 12.23 130.65 1.60 1.60 16 24 S 0.16 2.95 23.02 -56.49 -1.30 1.65 16 25 H 0.07 1.32 5.86 -2.39 -0.01 1.31 16 26 H 0.06 1.09 8.13 -2.38 -0.02 1.07 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.35 8.65 7.95 -89.69 -0.71 7.94 16 29 H 0.06 2.02 7.77 -2.39 -0.02 2.00 16 30 H 0.07 2.04 6.67 -2.38 -0.02 2.02 16 31 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.03 1.50 7.26 -2.38 -0.02 1.48 16 33 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 2.20 7.68 -2.38 -0.02 2.18 16 36 H 0.18 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.22 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -63.31 311.17 1.17 -62.13 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.35 Total: 12.77 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 4.76 Total: -34.72 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -4.66 Total: -87.82 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -1.30 Total: 1.65 kcal Total: -63.31 1.17 -62.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378859705.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.264 kcal (2) G-P(sol) polarization free energy of solvation -63.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds