Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28671 * 124.92942 * 2 1 4 4 C 1.32518 * 117.88448 * 179.97438 * 3 2 1 5 5 C 1.34982 * 113.04166 * 359.91357 * 4 3 2 6 6 S 1.70911 * 124.93328 * 179.97438 * 2 1 3 7 7 C 1.51005 * 124.94335 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.61142 * 256.34915 * 7 5 4 9 9 N 1.46902 * 109.61855 * 135.99080 * 7 5 4 10 10 C 1.46902 * 110.99661 * 155.01943 * 9 7 5 11 11 H 1.09000 * 109.47147 * 31.64906 * 10 9 7 12 12 C 1.53001 * 109.46806 * 271.64767 * 10 9 7 13 13 C 1.50696 * 109.46732 * 151.65065 * 10 9 7 14 14 H 1.08007 * 120.00520 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00090 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99894 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00269 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47296 * 59.99693 * 17 15 13 19 19 H 1.48506 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47111 * 299.99870 * 17 15 13 21 21 C 1.53272 * 108.73581 * 16.16550 * 7 5 4 22 22 C 1.53143 * 108.99964 * 310.64521 * 21 7 5 23 23 C 1.52123 * 124.20551 * 179.97438 * 4 3 2 24 24 H 1.08995 * 109.47709 * 90.01786 * 1 2 3 25 25 H 1.09003 * 109.46826 * 210.02544 * 1 2 3 26 26 H 1.09000 * 109.47122 * 330.01607 * 1 2 3 27 27 H 1.00895 * 111.00060 * 31.06540 * 9 7 5 28 28 H 1.08995 * 109.47454 * 59.49889 * 12 10 9 29 29 H 1.09002 * 109.46969 * 179.49872 * 12 10 9 30 30 H 1.09000 * 109.47227 * 299.49317 * 12 10 9 31 31 H 0.96997 * 120.00197 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.54937 * 70.50031 * 21 7 5 33 33 H 1.09000 * 109.54779 * 190.78866 * 21 7 5 34 34 H 1.09002 * 109.47929 * 190.37138 * 22 21 7 35 35 H 1.08993 * 109.47516 * 310.38722 * 22 21 7 36 36 H 1.09007 * 109.59605 * 77.79775 * 23 4 3 37 37 H 1.09000 * 109.72088 * 317.41669 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0549 0.0000 4 6 3.5589 0.8924 0.0005 5 6 3.9309 -0.4052 0.0029 6 16 2.4856 -1.4012 0.0006 7 6 5.3591 -0.8955 0.0034 8 1 5.6262 -1.2453 -0.9937 9 7 5.5027 -1.9951 0.9669 10 6 6.6284 -2.8673 0.6061 11 1 7.4035 -2.2768 0.1177 12 6 6.1417 -3.9595 -0.3484 13 6 7.1906 -3.5026 1.8516 14 1 6.7556 -3.2804 2.8149 15 6 8.2605 -4.3677 1.7615 16 7 8.7900 -4.6388 0.5885 17 14 8.9579 -5.1547 3.3053 18 1 7.9019 -5.9583 3.9717 19 1 10.0958 -6.0365 2.9408 20 1 9.4311 -4.0943 4.2311 21 6 6.2775 0.2640 0.4051 22 6 5.9250 1.4939 -0.4365 23 6 4.5619 2.0361 0.0000 24 1 -0.3634 -0.0003 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5136 27 1 4.6463 -2.5230 1.0433 28 1 5.7268 -3.4998 -1.2454 29 1 6.9787 -4.6014 -0.6231 30 1 5.3729 -4.5556 0.1432 31 1 9.5428 -5.2470 0.5251 32 1 6.1360 0.4923 1.4616 33 1 7.3161 -0.0146 0.2267 34 1 6.6846 2.2624 -0.2930 35 1 5.8850 1.2145 -1.4893 36 1 4.6395 2.4548 1.0035 37 1 4.2366 2.8103 -0.6949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381288355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = 26.826098 kcal Electronic energy + Delta-G solvation = -18189.584827 eV Core-core repulsion = 15478.682853 eV Total energy + Delta-G solvation = -2710.901974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98506 -37.18803 -34.89692 -32.46151 -31.41383 -29.86402 -27.66429 -26.77072 -25.14598 -23.53042 -22.16083 -21.07491 -19.90004 -18.33068 -17.63304 -16.34995 -15.29877 -15.03872 -14.71303 -14.25566 -14.11811 -14.00677 -13.57186 -13.01035 -12.82563 -12.59044 -12.29588 -12.13500 -11.82257 -11.64883 -11.55775 -10.96520 -10.91476 -10.78406 -10.55222 -10.47371 -10.36554 -10.12970 -9.94342 -9.36024 -9.10893 -8.98485 -8.37482 -8.36091 -7.31890 -5.99939 -4.03113 0.90748 1.50577 1.96355 2.91394 3.34197 3.38010 3.41668 4.08821 4.42698 4.91078 4.96843 5.04086 5.18962 5.23755 5.31692 5.34387 5.39563 5.50942 5.69626 5.74740 5.82962 5.87159 6.06082 6.16803 6.32839 6.36607 6.54402 6.63907 6.73047 6.78281 7.03813 7.28753 7.68812 7.85807 7.91750 8.22110 8.43581 8.54879 9.03431 9.62099 11.07118 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.005283 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.183892 B = 5299.035861 C = 5858.131015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.028 3.972 3 N -0.474 5.474 4 C 0.057 3.943 5 C -0.204 4.204 6 S 0.125 5.875 7 C 0.163 3.837 8 H 0.054 0.946 9 N -0.674 5.674 10 C 0.211 3.789 11 H 0.037 0.963 12 C -0.170 4.170 13 C -0.494 4.494 14 H 0.062 0.938 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.277 1.277 21 C -0.101 4.101 22 C -0.120 4.120 23 C -0.033 4.033 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.324 0.676 28 H 0.003 0.997 29 H 0.091 0.909 30 H 0.029 0.971 31 H 0.260 0.740 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.886 9.414 -3.461 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.250 4.250 3 N -0.188 5.188 4 C -0.075 4.075 5 C -0.325 4.325 6 S 0.381 5.619 7 C 0.051 3.949 8 H 0.071 0.929 9 N -0.305 5.305 10 C 0.103 3.897 11 H 0.055 0.945 12 C -0.229 4.229 13 C -0.533 4.533 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.204 1.204 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.141 4.141 22 C -0.158 4.158 23 C -0.073 4.073 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.022 0.978 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.885 9.073 -3.091 15.269 hybrid contribution 0.561 -0.400 -0.015 0.689 sum -11.324 8.673 -3.107 14.598 Atomic orbital electron populations 1.20359 0.85529 1.03871 1.03440 1.26690 1.01352 0.91292 1.05662 1.65775 1.04938 1.32209 1.15920 1.20928 0.89243 0.93705 1.03586 1.26475 1.00093 0.95912 1.10031 1.83837 0.97463 1.12119 1.68455 1.20086 0.85667 0.93735 0.95439 0.92863 1.61044 1.08590 1.13449 1.47458 1.19263 0.87310 0.88596 0.94494 0.94534 1.22454 1.01570 1.01862 0.97033 1.21088 1.14054 1.24908 0.93244 0.91958 1.24939 0.96734 0.96652 0.96115 1.69868 1.24438 1.36556 1.22900 0.86560 0.78388 0.79144 0.83279 1.20381 1.21463 1.20281 1.21612 0.99378 0.92567 1.00531 1.21624 0.95674 0.98272 1.00274 1.20315 0.91288 0.93331 1.02374 0.90050 0.90300 0.89651 0.85795 0.97760 0.89029 0.95221 0.92993 0.90646 0.90623 0.90840 0.91876 0.90204 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.46 36.00 0.38 -0.30 16 2 C 0.03 0.39 7.38 -13.60 -0.10 0.29 16 3 N -0.47 -7.50 10.51 -7.25 -0.08 -7.57 16 4 C 0.06 0.91 6.78 -82.75 -0.56 0.35 16 5 C -0.20 -3.44 5.99 -35.32 -0.21 -3.65 16 6 S 0.12 1.85 22.04 -107.50 -2.37 -0.52 16 7 C 0.16 3.00 2.63 -68.57 -0.18 2.82 16 8 H 0.05 1.03 7.38 -51.93 -0.38 0.65 16 9 N -0.67 -14.42 6.06 -101.86 -0.62 -15.03 16 10 C 0.21 5.21 2.38 -68.87 -0.16 5.05 16 11 H 0.04 0.98 7.30 -51.93 -0.38 0.60 16 12 C -0.17 -4.06 8.92 37.16 0.33 -3.73 16 13 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 14 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 15 C 0.06 1.54 5.30 -17.82 -0.09 1.45 16 16 N -0.90 -25.36 11.32 55.43 0.63 -24.73 16 17 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.10 -1.68 5.40 -26.52 -0.14 -1.82 16 22 C -0.12 -1.58 5.87 -26.63 -0.16 -1.73 16 23 C -0.03 -0.44 6.29 -27.15 -0.17 -0.61 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.32 6.75 7.06 -39.29 -0.28 6.47 16 28 H 0.00 0.07 7.69 -51.93 -0.40 -0.32 16 29 H 0.09 2.42 6.08 -51.93 -0.32 2.10 16 30 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 33 H 0.08 1.33 7.71 -51.93 -0.40 0.93 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -29.42 309.59 -9.67 -39.09 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -5.50 Total: 3.47 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: -1.38 Total: -15.74 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.07 Total: -47.34 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.37 Total: -0.52 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.42 -9.67 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381288355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.912 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds