Wall clock time and date at job start Mon Mar 30 2020 06:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28671 * 124.92942 * 2 1 4 4 C 1.32518 * 117.88448 * 179.97438 * 3 2 1 5 5 C 1.34982 * 113.04166 * 359.91357 * 4 3 2 6 6 S 1.70911 * 124.93328 * 179.97438 * 2 1 3 7 7 C 1.51005 * 124.94335 * 179.97438 * 5 4 3 8 8 H 1.08998 * 109.61142 * 256.34915 * 7 5 4 9 9 N 1.46902 * 109.61855 * 135.99080 * 7 5 4 10 10 C 1.46902 * 110.99661 * 155.01943 * 9 7 5 11 11 H 1.09000 * 109.47147 * 31.64906 * 10 9 7 12 12 C 1.53001 * 109.46806 * 271.64767 * 10 9 7 13 13 C 1.50696 * 109.46732 * 151.65065 * 10 9 7 14 14 H 1.08007 * 120.00520 * 359.97438 * 13 10 9 15 15 C 1.37875 * 120.00090 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99894 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00269 * 179.97438 * 15 13 10 18 18 H 1.48495 * 109.47296 * 59.99693 * 17 15 13 19 19 H 1.48506 * 109.47343 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47111 * 299.99870 * 17 15 13 21 21 C 1.53272 * 108.73581 * 16.16550 * 7 5 4 22 22 C 1.53143 * 108.99964 * 310.64521 * 21 7 5 23 23 C 1.52123 * 124.20551 * 179.97438 * 4 3 2 24 24 H 1.08995 * 109.47709 * 90.01786 * 1 2 3 25 25 H 1.09003 * 109.46826 * 210.02544 * 1 2 3 26 26 H 1.09000 * 109.47122 * 330.01607 * 1 2 3 27 27 H 1.00895 * 111.00060 * 31.06540 * 9 7 5 28 28 H 1.08995 * 109.47454 * 59.49889 * 12 10 9 29 29 H 1.09002 * 109.46969 * 179.49872 * 12 10 9 30 30 H 1.09000 * 109.47227 * 299.49317 * 12 10 9 31 31 H 0.96997 * 120.00197 * 179.97438 * 16 15 13 32 32 H 1.09003 * 109.54937 * 70.50031 * 21 7 5 33 33 H 1.09000 * 109.54779 * 190.78866 * 21 7 5 34 34 H 1.09002 * 109.47929 * 190.37138 * 22 21 7 35 35 H 1.08993 * 109.47516 * 310.38722 * 22 21 7 36 36 H 1.09007 * 109.59605 * 77.79775 * 23 4 3 37 37 H 1.09000 * 109.72088 * 317.41669 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2437 1.0549 0.0000 4 6 3.5589 0.8924 0.0005 5 6 3.9309 -0.4052 0.0029 6 16 2.4856 -1.4012 0.0006 7 6 5.3591 -0.8955 0.0034 8 1 5.6262 -1.2453 -0.9937 9 7 5.5027 -1.9951 0.9669 10 6 6.6284 -2.8673 0.6061 11 1 7.4035 -2.2768 0.1177 12 6 6.1417 -3.9595 -0.3484 13 6 7.1906 -3.5026 1.8516 14 1 6.7556 -3.2804 2.8149 15 6 8.2605 -4.3677 1.7615 16 7 8.7900 -4.6388 0.5885 17 14 8.9579 -5.1547 3.3053 18 1 7.9019 -5.9583 3.9717 19 1 10.0958 -6.0365 2.9408 20 1 9.4311 -4.0943 4.2311 21 6 6.2775 0.2640 0.4051 22 6 5.9250 1.4939 -0.4365 23 6 4.5619 2.0361 0.0000 24 1 -0.3634 -0.0003 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3633 0.8901 0.5136 27 1 4.6463 -2.5230 1.0433 28 1 5.7268 -3.4998 -1.2454 29 1 6.9787 -4.6014 -0.6231 30 1 5.3729 -4.5556 0.1432 31 1 9.5428 -5.2470 0.5251 32 1 6.1360 0.4923 1.4616 33 1 7.3161 -0.0146 0.2267 34 1 6.6846 2.2624 -0.2930 35 1 5.8850 1.2145 -1.4893 36 1 4.6395 2.4548 1.0035 37 1 4.2366 2.8103 -0.6949 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381288355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:19 Heat of formation + Delta-G solvation = 8.615826 kcal Electronic energy + Delta-G solvation = -18190.374483 eV Core-core repulsion = 15478.682853 eV Total energy + Delta-G solvation = -2711.691631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.17948 -38.66680 -36.46839 -34.31718 -32.39568 -31.51676 -28.75589 -28.39263 -27.24203 -24.68234 -23.58640 -22.39551 -21.56876 -19.63799 -18.78784 -18.29764 -16.87811 -16.63183 -16.18341 -15.60461 -15.31126 -15.21733 -14.90986 -14.57551 -14.25489 -13.72329 -13.66051 -13.42255 -13.17495 -13.08113 -12.86498 -12.84086 -12.69217 -12.46687 -12.20289 -12.03507 -11.82883 -11.62737 -11.57207 -11.04908 -10.56919 -10.48043 -10.29069 -9.56676 -9.01858 -8.10029 -6.20962 -0.26509 0.35412 0.79608 1.43809 1.45099 1.52970 1.74288 2.44001 3.05451 3.18380 3.48701 3.70651 3.90564 4.00016 4.18315 4.29242 4.35991 4.44208 4.65795 4.67062 4.67906 4.71371 4.81114 4.93575 4.96177 5.02361 5.10727 5.14600 5.19328 5.31616 5.37375 5.44922 5.65935 5.78725 6.23855 6.57123 6.67186 6.76471 6.90547 7.48454 8.95408 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026354 B = 0.005283 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.183892 B = 5299.035861 C = 5858.131015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.046 3.954 3 N -0.496 5.496 4 C 0.060 3.940 5 C -0.241 4.241 6 S 0.120 5.880 7 C 0.167 3.833 8 H 0.038 0.962 9 N -0.678 5.678 10 C 0.218 3.782 11 H 0.010 0.990 12 C -0.157 4.157 13 C -0.514 4.514 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.960 3.040 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 C -0.099 4.099 22 C -0.109 4.109 23 C -0.033 4.033 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.326 0.674 28 H 0.020 0.980 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 10.373 -3.170 17.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.232 4.232 3 N -0.211 5.211 4 C -0.071 4.071 5 C -0.362 4.362 6 S 0.377 5.623 7 C 0.055 3.945 8 H 0.055 0.945 9 N -0.309 5.309 10 C 0.110 3.890 11 H 0.028 0.972 12 C -0.216 4.216 13 C -0.553 4.553 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.561 5.561 17 Si 0.785 3.215 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.199 1.199 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.072 4.072 24 H 0.120 0.880 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.144 0.856 28 H 0.039 0.961 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.351 10.039 -2.803 16.938 hybrid contribution 0.904 -0.660 -0.129 1.126 sum -12.447 9.379 -2.932 15.859 Atomic orbital electron populations 1.20621 0.82235 1.05355 1.05196 1.27550 1.03064 0.90212 1.02420 1.65907 1.04820 1.32726 1.17686 1.21391 0.89988 0.94041 1.01726 1.26271 0.99672 0.96856 1.13448 1.83788 0.97082 1.12702 1.68682 1.19983 0.87657 0.93059 0.93802 0.94476 1.60937 1.07727 1.13442 1.48770 1.18993 0.87815 0.88703 0.93501 0.97213 1.22261 1.00550 1.01223 0.97570 1.21354 1.14689 1.25537 0.93715 0.92930 1.25674 0.96961 0.97054 0.98942 1.69990 1.24665 1.36877 1.24582 0.85589 0.77786 0.78272 0.79805 1.19799 1.20897 1.19945 1.21566 0.97997 0.93697 1.00602 1.21564 0.96587 0.97145 0.99418 1.20429 0.90428 0.92956 1.03407 0.87979 0.88331 0.88582 0.85618 0.96080 0.91506 0.95013 0.92938 0.91687 0.92445 0.88196 0.91784 0.89355 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.46 71.23 0.75 -0.40 16 2 C 0.05 1.18 7.38 88.57 0.65 1.83 16 3 N -0.50 -14.72 10.51 -176.84 -1.86 -16.58 16 4 C 0.06 1.86 6.78 42.16 0.29 2.14 16 5 C -0.24 -8.07 5.99 25.03 0.15 -7.92 16 6 S 0.12 3.46 22.04 -56.49 -1.24 2.22 16 7 C 0.17 6.27 2.63 44.36 0.12 6.39 16 8 H 0.04 1.49 7.38 -2.39 -0.02 1.48 16 9 N -0.68 -29.71 6.06 -476.18 -2.88 -32.60 16 10 C 0.22 11.12 2.38 44.17 0.11 11.22 16 11 H 0.01 0.56 7.30 -2.39 -0.02 0.54 16 12 C -0.16 -7.65 8.92 71.98 0.64 -7.01 16 13 C -0.51 -28.74 8.84 25.60 0.23 -28.52 16 14 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 15 C 0.01 0.67 5.30 84.65 0.45 1.12 16 16 N -0.92 -52.85 11.32 21.45 0.24 -52.61 16 17 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 21 C -0.10 -3.34 5.40 30.73 0.17 -3.17 16 22 C -0.11 -2.73 5.87 30.66 0.18 -2.55 16 23 C -0.03 -0.81 6.29 30.32 0.19 -0.62 16 24 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.33 13.82 7.06 -89.70 -0.63 13.19 16 28 H 0.02 0.91 7.69 -2.39 -0.02 0.89 16 29 H 0.07 3.61 6.08 -2.39 -0.01 3.59 16 30 H 0.03 1.48 8.13 -2.39 -0.02 1.46 16 31 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 33 H 0.06 2.10 7.71 -2.39 -0.02 2.08 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.60 8.10 -2.39 -0.02 1.58 16 36 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -63.43 309.59 0.63 -62.80 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.43 Total: 18.17 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 3.91 Total: -27.48 kcal Atomic # 7 Polarization: -97.29 SS G_CDS: -4.50 Total: -101.79 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -1.24 Total: 2.22 kcal Total: -63.43 0.63 -62.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381288355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.415 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds