Wall clock time and date at job start Mon Mar 30 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28661 * 124.93103 * 2 1 4 4 C 1.32525 * 117.88204 * 179.97438 * 3 2 1 5 5 C 1.34617 * 113.15440 * 0.02562 * 4 3 2 6 6 S 1.70914 * 124.92484 * 179.97438 * 2 1 3 7 7 C 1.50988 * 125.22798 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.62141 * 103.85383 * 7 5 4 9 9 N 1.46897 * 109.62283 * 224.21501 * 7 5 4 10 10 C 1.46902 * 110.99967 * 275.00050 * 9 7 5 11 11 H 1.08999 * 109.47004 * 35.00106 * 10 9 7 12 12 C 1.53002 * 109.46913 * 274.99749 * 10 9 7 13 13 C 1.50707 * 109.47138 * 154.99692 * 10 9 7 14 14 H 1.07998 * 119.99685 * 5.41874 * 13 10 9 15 15 C 1.37875 * 119.99975 * 185.14354 * 13 10 9 16 16 N 1.31522 * 119.99884 * 355.40264 * 15 13 10 17 17 Si 1.86795 * 120.00268 * 175.40924 * 15 13 10 18 18 H 1.48496 * 109.47456 * 94.99480 * 17 15 13 19 19 H 1.48494 * 109.47177 * 215.00227 * 17 15 13 20 20 H 1.48508 * 109.46820 * 334.99725 * 17 15 13 21 21 C 1.53278 * 108.58127 * 343.94449 * 7 5 4 22 22 C 1.53201 * 108.97443 * 49.29068 * 21 7 5 23 23 C 1.52124 * 124.20353 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.46998 * 270.02413 * 1 2 3 25 25 H 1.09000 * 109.46924 * 30.02416 * 1 2 3 26 26 H 1.08997 * 109.47469 * 150.02134 * 1 2 3 27 27 H 1.00897 * 111.00064 * 38.95106 * 9 7 5 28 28 H 1.08997 * 109.46952 * 294.94607 * 12 10 9 29 29 H 1.08997 * 109.47459 * 54.95325 * 12 10 9 30 30 H 1.09002 * 109.46630 * 174.94968 * 12 10 9 31 31 H 0.96998 * 119.99737 * 179.97438 * 16 15 13 32 32 H 1.08997 * 109.54882 * 169.12595 * 21 7 5 33 33 H 1.09007 * 109.55035 * 289.41729 * 21 7 5 34 34 H 1.08999 * 109.46589 * 169.61221 * 22 21 7 35 35 H 1.08999 * 109.50052 * 49.58603 * 22 21 7 36 36 H 1.08999 * 109.59677 * 282.22196 * 23 4 3 37 37 H 1.08996 * 109.59374 * 42.53280 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2438 1.0548 0.0000 4 6 3.5590 0.8922 0.0005 5 6 3.9324 -0.4012 0.0004 6 16 2.4855 -1.4013 0.0006 7 6 5.3590 -0.8958 0.0004 8 1 5.6243 -1.2480 0.9972 9 7 5.5002 -1.9943 -0.9646 10 6 5.1229 -3.2785 -0.3592 11 1 4.3028 -3.1228 0.3416 12 6 6.3249 -3.8646 0.3842 13 6 4.6858 -4.2340 -1.4396 14 1 4.7705 -3.9501 -2.4781 15 6 4.1830 -5.4727 -1.1023 16 7 4.1687 -5.8563 0.1557 17 14 3.5224 -6.6063 -2.4319 18 1 4.5898 -7.5478 -2.8551 19 1 2.3679 -7.3736 -1.8995 20 1 3.0840 -5.7983 -3.5983 21 6 6.2778 0.2634 -0.4014 22 6 5.9245 1.4938 0.4402 23 6 4.5621 2.0359 0.0012 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 4.9606 -1.8151 -1.7980 28 1 7.1126 -4.1038 -0.3302 29 1 6.6968 -3.1363 1.1049 30 1 6.0215 -4.7713 0.9077 31 1 3.8146 -6.7276 0.3930 32 1 7.3162 -0.0152 -0.2219 33 1 6.1372 0.4910 -1.4581 34 1 6.6843 2.2621 0.2972 35 1 5.8833 1.2149 1.4931 36 1 4.6401 2.4542 -1.0023 37 1 4.2339 2.8095 0.6953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381288365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:21 Heat of formation + Delta-G solvation = 24.407026 kcal Electronic energy + Delta-G solvation = -18480.890914 eV Core-core repulsion = 15769.884041 eV Total energy + Delta-G solvation = -2711.006873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.82343 -37.08739 -34.84962 -32.44914 -31.24274 -29.77387 -27.53600 -26.87659 -25.17780 -23.40596 -22.07000 -20.80102 -19.81827 -18.22105 -17.52451 -16.44229 -15.22626 -14.84637 -14.73088 -14.16779 -14.02173 -13.81936 -13.54451 -13.01586 -12.73164 -12.46505 -12.28393 -12.11923 -11.66431 -11.58890 -11.14945 -11.02934 -10.86923 -10.71703 -10.63215 -10.47845 -10.34630 -10.23743 -9.81283 -9.12152 -8.86357 -8.79267 -8.50933 -8.14458 -7.39849 -6.07604 -4.12706 1.14219 1.84627 2.30896 3.10954 3.26703 3.34033 3.37505 4.28443 4.37000 4.92848 5.05255 5.08711 5.25321 5.34097 5.40909 5.46183 5.49065 5.55081 5.78578 5.82828 5.85983 5.94087 6.07824 6.13290 6.33303 6.36785 6.54816 6.64195 6.80082 7.04652 7.15052 7.41390 7.73639 7.79916 8.12679 8.16846 8.27463 8.57165 8.96196 9.53249 10.99692 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.007344 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.002244 B = 3811.547229 C = 4853.095156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.004 3.996 3 N -0.484 5.484 4 C 0.051 3.949 5 C -0.246 4.246 6 S 0.187 5.813 7 C 0.163 3.837 8 H 0.086 0.914 9 N -0.678 5.678 10 C 0.209 3.791 11 H 0.010 0.990 12 C -0.122 4.122 13 C -0.518 4.518 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.100 4.100 22 C -0.119 4.119 23 C -0.033 4.033 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.335 0.665 28 H 0.034 0.966 29 H 0.005 0.995 30 H 0.074 0.926 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.138 11.919 1.209 12.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.273 4.273 3 N -0.199 5.199 4 C -0.082 4.082 5 C -0.370 4.370 6 S 0.445 5.555 7 C 0.049 3.951 8 H 0.104 0.896 9 N -0.308 5.308 10 C 0.101 3.899 11 H 0.027 0.973 12 C -0.180 4.180 13 C -0.557 4.557 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.072 4.072 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.096 0.904 27 H 0.153 0.847 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.065 11.035 1.440 11.318 hybrid contribution -0.864 0.005 -0.603 1.054 sum -2.929 11.039 0.837 11.452 Atomic orbital electron populations 1.20324 0.85992 1.03583 1.03231 1.26966 1.01695 0.93344 1.05336 1.65798 1.04811 1.32791 1.16515 1.20789 0.89476 0.93605 1.04305 1.27433 1.02160 0.96314 1.11080 1.85006 0.95754 1.08427 1.66302 1.20335 0.84835 0.92029 0.97901 0.89643 1.60883 1.61088 1.02065 1.06719 1.19234 0.92382 0.84346 0.93924 0.97266 1.21723 0.98131 1.00113 0.98080 1.21181 1.41701 1.00036 0.92748 0.92190 1.24879 0.95658 0.97732 0.95390 1.69922 1.45818 1.20516 1.16312 0.86576 0.78654 0.80802 0.81984 1.20714 1.21165 1.19823 1.21584 0.99387 0.93059 0.99969 1.21611 0.95775 0.97951 1.00412 1.20267 0.91346 0.93595 1.02037 0.90248 0.90068 0.90388 0.84655 0.94641 0.97589 0.90686 0.92904 0.90703 0.91536 0.91093 0.91711 0.90594 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.46 36.01 0.38 -0.50 16 2 C 0.00 0.06 7.38 -13.60 -0.10 -0.04 16 3 N -0.48 -8.52 10.51 -7.32 -0.08 -8.60 16 4 C 0.05 0.87 6.78 -82.87 -0.56 0.31 16 5 C -0.25 -4.48 5.74 -35.45 -0.20 -4.68 16 6 S 0.19 3.49 20.89 -107.50 -2.25 1.24 16 7 C 0.16 2.93 2.62 -68.58 -0.18 2.75 16 8 H 0.09 1.63 7.11 -51.93 -0.37 1.27 16 9 N -0.68 -14.12 6.02 -101.86 -0.61 -14.73 16 10 C 0.21 5.05 2.00 -68.86 -0.14 4.91 16 11 H 0.01 0.25 5.95 -51.93 -0.31 -0.05 16 12 C -0.12 -2.95 9.18 37.16 0.34 -2.61 16 13 C -0.52 -13.73 8.50 -34.44 -0.29 -14.02 16 14 H 0.06 1.59 7.68 -52.49 -0.40 1.19 16 15 C 0.07 1.77 5.36 -17.82 -0.10 1.67 16 16 N -0.89 -24.65 11.58 55.43 0.64 -24.01 16 17 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.10 -1.45 5.57 -26.48 -0.15 -1.60 16 22 C -0.12 -1.45 5.88 -26.59 -0.16 -1.61 16 23 C -0.03 -0.44 6.29 -27.14 -0.17 -0.61 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.34 7.11 8.00 -39.29 -0.31 6.79 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.01 0.11 7.38 -51.93 -0.38 -0.27 16 30 H 0.07 1.97 6.45 -51.93 -0.33 1.63 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.97 8.11 -51.92 -0.42 0.55 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -28.69 307.83 -9.48 -38.17 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.47 Total: 3.45 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -1.33 Total: -16.03 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -0.05 Total: -47.34 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.25 Total: 1.24 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.69 -9.48 -38.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381288365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.573 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds