Wall clock time and date at job start Mon Mar 30 2020 06:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.28661 * 124.93103 * 2 1 4 4 C 1.32525 * 117.88204 * 179.97438 * 3 2 1 5 5 C 1.34617 * 113.15440 * 0.02562 * 4 3 2 6 6 S 1.70914 * 124.92484 * 179.97438 * 2 1 3 7 7 C 1.50988 * 125.22798 * 179.97438 * 5 4 3 8 8 H 1.09004 * 109.62141 * 103.85383 * 7 5 4 9 9 N 1.46897 * 109.62283 * 224.21501 * 7 5 4 10 10 C 1.46902 * 110.99967 * 275.00050 * 9 7 5 11 11 H 1.08999 * 109.47004 * 35.00106 * 10 9 7 12 12 C 1.53002 * 109.46913 * 274.99749 * 10 9 7 13 13 C 1.50707 * 109.47138 * 154.99692 * 10 9 7 14 14 H 1.07998 * 119.99685 * 5.41874 * 13 10 9 15 15 C 1.37875 * 119.99975 * 185.14354 * 13 10 9 16 16 N 1.31522 * 119.99884 * 355.40264 * 15 13 10 17 17 Si 1.86795 * 120.00268 * 175.40924 * 15 13 10 18 18 H 1.48496 * 109.47456 * 94.99480 * 17 15 13 19 19 H 1.48494 * 109.47177 * 215.00227 * 17 15 13 20 20 H 1.48508 * 109.46820 * 334.99725 * 17 15 13 21 21 C 1.53278 * 108.58127 * 343.94449 * 7 5 4 22 22 C 1.53201 * 108.97443 * 49.29068 * 21 7 5 23 23 C 1.52124 * 124.20353 * 180.02562 * 4 3 2 24 24 H 1.09000 * 109.46998 * 270.02413 * 1 2 3 25 25 H 1.09000 * 109.46924 * 30.02416 * 1 2 3 26 26 H 1.08997 * 109.47469 * 150.02134 * 1 2 3 27 27 H 1.00897 * 111.00064 * 38.95106 * 9 7 5 28 28 H 1.08997 * 109.46952 * 294.94607 * 12 10 9 29 29 H 1.08997 * 109.47459 * 54.95325 * 12 10 9 30 30 H 1.09002 * 109.46630 * 174.94968 * 12 10 9 31 31 H 0.96998 * 119.99737 * 179.97438 * 16 15 13 32 32 H 1.08997 * 109.54882 * 169.12595 * 21 7 5 33 33 H 1.09007 * 109.55035 * 289.41729 * 21 7 5 34 34 H 1.08999 * 109.46589 * 169.61221 * 22 21 7 35 35 H 1.08999 * 109.50052 * 49.58603 * 22 21 7 36 36 H 1.08999 * 109.59677 * 282.22196 * 23 4 3 37 37 H 1.08996 * 109.59374 * 42.53280 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2438 1.0548 0.0000 4 6 3.5590 0.8922 0.0005 5 6 3.9324 -0.4012 0.0004 6 16 2.4855 -1.4013 0.0006 7 6 5.3590 -0.8958 0.0004 8 1 5.6243 -1.2480 0.9972 9 7 5.5002 -1.9943 -0.9646 10 6 5.1229 -3.2785 -0.3592 11 1 4.3028 -3.1228 0.3416 12 6 6.3249 -3.8646 0.3842 13 6 4.6858 -4.2340 -1.4396 14 1 4.7705 -3.9501 -2.4781 15 6 4.1830 -5.4727 -1.1023 16 7 4.1687 -5.8563 0.1557 17 14 3.5224 -6.6063 -2.4319 18 1 4.5898 -7.5478 -2.8551 19 1 2.3679 -7.3736 -1.8995 20 1 3.0840 -5.7983 -3.5983 21 6 6.2778 0.2634 -0.4014 22 6 5.9245 1.4938 0.4402 23 6 4.5621 2.0359 0.0012 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 4.9606 -1.8151 -1.7980 28 1 7.1126 -4.1038 -0.3302 29 1 6.6968 -3.1363 1.1049 30 1 6.0215 -4.7713 0.9077 31 1 3.8146 -6.7276 0.3930 32 1 7.3162 -0.0152 -0.2219 33 1 6.1372 0.4910 -1.4581 34 1 6.6843 2.2621 0.2972 35 1 5.8833 1.2149 1.4931 36 1 4.6401 2.4542 -1.0023 37 1 4.2339 2.8095 0.6953 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381288365.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:21 Heat of formation + Delta-G solvation = 6.673510 kcal Electronic energy + Delta-G solvation = -18481.659897 eV Core-core repulsion = 15769.884041 eV Total energy + Delta-G solvation = -2711.775856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.13059 -38.56541 -36.40533 -34.25300 -32.37869 -31.42233 -28.71626 -28.49588 -27.20454 -24.66973 -23.42800 -22.11994 -21.54550 -19.61691 -18.83230 -18.33717 -16.94899 -16.30101 -16.18063 -15.53871 -15.39398 -15.23116 -14.85354 -14.45670 -14.27716 -13.73412 -13.55047 -13.30783 -13.22373 -12.94985 -12.83190 -12.76972 -12.49628 -12.40648 -12.27577 -12.11351 -11.77132 -11.67132 -11.33368 -10.88628 -10.61001 -10.37816 -10.24225 -9.51466 -9.07351 -8.12870 -6.23957 -0.20600 0.48951 0.95947 1.40163 1.42050 1.51728 1.79428 2.41573 3.10051 3.17965 3.52008 3.85324 3.95437 4.10132 4.20687 4.26963 4.44565 4.49156 4.62180 4.68947 4.73112 4.84466 4.96131 4.98965 5.06511 5.11452 5.15928 5.19943 5.26209 5.39213 5.44677 5.51166 5.69771 5.83858 6.18791 6.41882 6.71610 6.80231 6.96744 7.45374 8.93807 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019494 B = 0.007344 C = 0.005768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.002244 B = 3811.547229 C = 4853.095156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 N -0.499 5.499 4 C 0.054 3.946 5 C -0.264 4.264 6 S 0.114 5.886 7 C 0.163 3.837 8 H 0.068 0.932 9 N -0.674 5.674 10 C 0.214 3.786 11 H -0.008 1.008 12 C -0.112 4.112 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.021 3.979 16 N -0.914 5.914 17 Si 0.951 3.049 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.269 1.269 21 C -0.094 4.094 22 C -0.110 4.110 23 C -0.032 4.032 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.331 0.669 28 H 0.028 0.972 29 H 0.023 0.977 30 H 0.050 0.950 31 H 0.262 0.738 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 13.804 0.694 14.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.252 4.252 3 N -0.214 5.214 4 C -0.078 4.078 5 C -0.387 4.387 6 S 0.372 5.628 7 C 0.050 3.950 8 H 0.086 0.914 9 N -0.303 5.303 10 C 0.106 3.894 11 H 0.009 0.991 12 C -0.171 4.171 13 C -0.568 4.568 14 H 0.072 0.928 15 C -0.178 4.178 16 N -0.553 5.553 17 Si 0.776 3.224 18 H -0.204 1.204 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.133 4.133 22 C -0.148 4.148 23 C -0.072 4.072 24 H 0.117 0.883 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.108 0.892 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.235 12.939 0.925 13.163 hybrid contribution -0.861 -0.495 -0.414 1.076 sum -3.096 12.445 0.511 12.834 Atomic orbital electron populations 1.20546 0.82956 1.04922 1.04854 1.27651 1.03202 0.91617 1.02736 1.65939 1.05181 1.32688 1.17630 1.21468 0.90000 0.94241 1.02069 1.27335 1.01414 0.96450 1.13504 1.85217 0.98221 1.11275 1.68107 1.20386 0.85924 0.92302 0.96356 0.91382 1.60836 1.60620 1.01799 1.07066 1.19015 0.91632 0.85653 0.93118 0.99110 1.21568 0.97938 0.99511 0.98060 1.21439 1.41716 1.00712 0.92971 0.92821 1.25579 0.95932 0.99120 0.97217 1.70036 1.46538 1.20875 1.17849 0.85658 0.78059 0.78964 0.79675 1.20405 1.20796 1.19364 1.21563 0.98750 0.92586 1.00438 1.21592 0.96071 0.97572 0.99567 1.20463 0.90776 0.92587 1.03353 0.88339 0.88428 0.89236 0.85098 0.95233 0.95822 0.93108 0.92924 0.89970 0.91447 0.87563 0.91995 0.89177 0.89115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.46 71.24 0.75 -0.90 16 2 C 0.03 0.83 7.38 88.57 0.65 1.48 16 3 N -0.50 -16.79 10.51 -177.08 -1.86 -18.65 16 4 C 0.05 1.77 6.78 42.08 0.29 2.06 16 5 C -0.26 -9.58 5.74 24.95 0.14 -9.44 16 6 S 0.11 4.34 20.89 -56.49 -1.18 3.16 16 7 C 0.16 5.86 2.62 44.35 0.12 5.98 16 8 H 0.07 2.64 7.11 -2.38 -0.02 2.63 16 9 N -0.67 -28.40 6.02 -476.19 -2.87 -31.27 16 10 C 0.21 10.63 2.00 44.17 0.09 10.72 16 11 H -0.01 -0.45 5.95 -2.39 -0.01 -0.47 16 12 C -0.11 -5.54 9.18 71.98 0.66 -4.88 16 13 C -0.53 -28.62 8.50 25.60 0.22 -28.40 16 14 H 0.05 2.90 7.68 -2.91 -0.02 2.88 16 15 C 0.02 1.16 5.36 84.65 0.45 1.61 16 16 N -0.91 -51.88 11.58 21.45 0.25 -51.63 16 17 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 C -0.09 -2.54 5.57 30.75 0.17 -2.37 16 22 C -0.11 -2.34 5.88 30.68 0.18 -2.16 16 23 C -0.03 -0.76 6.29 30.33 0.19 -0.57 16 24 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.33 14.30 8.00 -89.70 -0.72 13.58 16 28 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.02 1.03 7.38 -2.39 -0.02 1.01 16 30 H 0.05 2.74 6.45 -2.39 -0.02 2.72 16 31 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.83 8.11 -2.38 -0.02 1.81 16 34 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -62.11 307.83 0.63 -61.48 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.35 Total: 18.52 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 3.91 Total: -26.87 kcal Atomic # 7 Polarization: -97.07 SS G_CDS: -4.48 Total: -101.55 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.18 Total: 3.16 kcal Total: -62.11 0.63 -61.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381288365.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.158 kcal (2) G-P(sol) polarization free energy of solvation -62.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds