Wall clock time and date at job start Mon Mar 30 2020 06:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31789 * 122.74690 * 2 1 4 4 C 1.29029 * 117.12025 * 179.74865 * 3 2 1 5 5 S 1.70972 * 110.16952 * 0.50268 * 4 3 2 6 6 C 1.33637 * 122.75429 * 180.30042 * 2 1 3 7 7 C 1.50702 * 126.03601 * 359.97438 * 6 2 1 8 8 H 1.09000 * 109.47212 * 343.58784 * 7 6 2 9 9 C 1.52999 * 109.46933 * 103.58287 * 7 6 2 10 10 N 1.46898 * 109.47649 * 223.58506 * 7 6 2 11 11 C 1.46900 * 111.00122 * 153.53577 * 10 7 6 12 12 C 1.52995 * 109.46930 * 184.99158 * 11 10 7 13 13 C 1.50701 * 115.55167 * 270.88967 * 12 11 10 14 14 H 1.08002 * 119.99966 * 94.79997 * 13 12 11 15 15 C 1.37881 * 119.99882 * 274.79976 * 13 12 11 16 16 N 1.31513 * 119.99746 * 6.09166 * 15 13 12 17 17 Si 1.86799 * 119.99773 * 186.09514 * 15 13 12 18 18 H 1.48492 * 109.47557 * 59.99819 * 17 15 13 19 19 H 1.48507 * 109.47014 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46829 * 299.99498 * 17 15 13 21 21 C 1.53002 * 117.49944 * 125.18007 * 12 11 10 22 22 C 1.52996 * 59.99981 * 252.50902 * 21 12 11 23 23 H 1.08994 * 109.47293 * 269.70290 * 1 2 3 24 24 H 1.08999 * 109.47200 * 29.70921 * 1 2 3 25 25 H 1.09002 * 109.47120 * 149.70337 * 1 2 3 26 26 H 1.07999 * 124.91103 * 180.22506 * 4 3 2 27 27 H 1.08999 * 109.47293 * 179.97438 * 9 7 6 28 28 H 1.08998 * 109.47324 * 300.00541 * 9 7 6 29 29 H 1.09003 * 109.47240 * 60.00037 * 9 7 6 30 30 H 1.00896 * 110.99774 * 277.49542 * 10 7 6 31 31 H 1.08997 * 109.46825 * 304.99041 * 11 10 7 32 32 H 1.09000 * 109.46968 * 64.99290 * 11 10 7 33 33 H 0.96996 * 119.99610 * 185.00988 * 16 15 13 34 34 H 1.08998 * 117.49571 * 359.97438 * 21 12 11 35 35 H 1.08997 * 117.50061 * 145.01852 * 21 12 11 36 36 H 1.09005 * 117.50127 * 252.50619 * 22 21 12 37 37 H 1.09005 * 117.51698 * 107.48031 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0050 5 16 3.9333 -0.6730 -0.0035 6 6 2.2300 -1.1239 -0.0059 7 6 1.6848 -2.5288 -0.0127 8 1 0.6345 -2.5123 0.2781 9 6 1.8156 -3.1197 -1.4179 10 7 2.4432 -3.3531 0.9377 11 6 1.6271 -4.4687 1.4351 12 6 2.4044 -5.2289 2.5115 13 6 3.2786 -6.3502 2.0121 14 1 4.3252 -6.1717 1.8138 15 6 2.7424 -7.6040 1.8083 16 7 1.4470 -7.7935 1.9338 17 14 3.8558 -9.0334 1.3540 18 1 4.8574 -9.2422 2.4302 19 1 3.0403 -10.2637 1.1906 20 1 4.5548 -8.7307 0.0792 21 6 1.7315 -5.4101 3.8736 22 6 2.8987 -4.4328 3.7209 23 1 -0.3633 -0.0053 1.0276 24 1 -0.3633 0.8926 -0.5093 25 1 -0.3633 -0.8873 -0.5184 26 1 4.2059 1.8027 0.0092 27 1 1.4217 -4.1361 -1.4228 28 1 1.2529 -2.5081 -2.1231 29 1 2.8660 -3.1362 -1.7088 30 1 3.2994 -3.6884 0.5225 31 1 0.7019 -4.0803 1.8610 32 1 1.3929 -5.1431 0.6114 33 1 1.0786 -8.6879 1.8623 34 1 0.7352 -4.9874 4.0029 35 1 1.9209 -6.3406 4.4087 36 1 3.8561 -4.7204 4.1557 37 1 2.6705 -3.3673 3.7496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381321689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:33 Heat of formation + Delta-G solvation = 61.007592 kcal Electronic energy + Delta-G solvation = -18051.499780 eV Core-core repulsion = 15342.080027 eV Total energy + Delta-G solvation = -2709.419753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76854 -37.34155 -35.50432 -32.00231 -31.73047 -29.58725 -27.14312 -25.76288 -24.76789 -24.19224 -21.61290 -20.85638 -19.33504 -18.55533 -17.70881 -16.22168 -15.56241 -14.93761 -14.67737 -14.30174 -14.17418 -13.80674 -13.40325 -13.22034 -12.75834 -12.50483 -12.43724 -12.25876 -11.89494 -11.44505 -11.33915 -11.20583 -10.98661 -10.88408 -10.78968 -10.47906 -10.08213 -9.57163 -9.43236 -9.04267 -8.74192 -8.53827 -8.41026 -8.05299 -7.70390 -6.05125 -4.11534 0.90350 1.57423 1.99052 2.91668 3.27997 3.33735 3.36470 4.33120 4.39073 4.65330 5.05266 5.21796 5.22547 5.25608 5.43592 5.44775 5.55833 5.66712 5.78728 5.88267 6.00533 6.04592 6.17203 6.26910 6.37599 6.49174 6.60083 6.78936 6.88271 6.94286 7.18972 7.53018 7.58201 7.79184 7.85216 7.85454 8.05489 8.47655 8.92110 9.55000 11.03450 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.004964 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.914844 B = 5639.618657 C = 5742.632315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.040 3.960 3 N -0.469 5.469 4 C -0.008 4.008 5 S 0.145 5.855 6 C -0.177 4.177 7 C 0.153 3.847 8 H 0.093 0.907 9 C -0.177 4.177 10 N -0.676 5.676 11 C 0.108 3.892 12 C 0.045 3.955 13 C -0.496 4.496 14 H 0.057 0.943 15 C 0.072 3.928 16 N -0.878 5.878 17 Si 0.885 3.115 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.159 4.159 22 C -0.193 4.193 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.193 0.807 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.343 0.657 31 H 0.043 0.957 32 H 0.039 0.961 33 H 0.260 0.740 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 12.704 -5.492 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 N -0.183 5.183 4 C -0.306 4.306 5 S 0.399 5.601 6 C -0.299 4.299 7 C 0.040 3.960 8 H 0.111 0.889 9 C -0.236 4.236 10 N -0.307 5.307 11 C -0.020 4.020 12 C 0.044 3.956 13 C -0.534 4.534 14 H 0.076 0.924 15 C -0.131 4.131 16 N -0.515 5.515 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.197 4.197 22 C -0.230 4.230 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.210 0.790 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.189 12.999 -5.033 13.990 hybrid contribution -0.260 -1.354 -0.866 1.629 sum 0.929 11.644 -5.899 13.086 Atomic orbital electron populations 1.20306 0.87516 1.02806 1.02817 1.20115 0.98041 0.86213 1.04779 1.66139 1.05172 1.31690 1.15275 1.28160 0.95306 1.00631 1.06491 1.84057 1.07455 1.02003 1.66599 1.25913 0.94967 1.00268 1.08727 1.19926 0.97982 0.86433 0.91661 0.88868 1.22518 1.02323 1.01750 0.97008 1.60675 1.07869 1.24735 1.37423 1.21603 0.93847 0.88889 0.97707 1.18746 0.97091 0.94486 0.85257 1.20469 0.94755 0.93426 1.44744 0.92434 1.24965 0.94707 0.98600 0.94863 1.70011 1.10536 1.21717 1.49225 0.86780 0.80825 0.82056 0.79047 1.20261 1.21357 1.20282 1.22531 0.94032 0.99063 1.04123 1.22794 0.97636 0.95386 1.07233 0.90852 0.91058 0.90897 0.79034 0.91223 0.92454 0.92357 0.83799 0.93878 0.94296 0.93055 0.92218 0.90452 0.91130 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 9.80 36.01 0.35 -0.53 16 2 C 0.04 0.58 6.74 -84.22 -0.57 0.01 16 3 N -0.47 -6.81 10.53 -11.90 -0.13 -6.94 16 4 C -0.01 -0.10 12.23 51.59 0.63 0.53 16 5 S 0.15 1.88 23.09 -107.50 -2.48 -0.60 16 6 C -0.18 -2.57 5.49 -35.92 -0.20 -2.76 16 7 C 0.15 2.31 2.73 -68.86 -0.19 2.12 16 8 H 0.09 1.40 6.38 -51.93 -0.33 1.07 16 9 C -0.18 -2.43 9.15 37.16 0.34 -2.09 16 10 N -0.68 -12.18 5.91 -107.96 -0.64 -12.82 16 11 C 0.11 2.29 5.51 -3.83 -0.02 2.27 16 12 C 0.04 1.07 1.58 -155.66 -0.25 0.83 16 13 C -0.50 -13.05 8.78 -34.44 -0.30 -13.35 16 14 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 15 C 0.07 1.91 5.39 -17.82 -0.10 1.81 16 16 N -0.88 -24.25 12.91 55.43 0.72 -23.53 16 17 Si 0.89 20.62 29.55 -169.99 -5.02 15.60 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 C -0.16 -3.76 9.38 -26.73 -0.25 -4.01 16 22 C -0.19 -4.27 9.76 -26.73 -0.26 -4.53 16 23 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.77 7.06 -51.93 -0.37 0.41 16 26 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 27 H 0.07 1.03 7.65 -51.93 -0.40 0.63 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.34 6.35 8.50 -39.29 -0.33 6.02 16 31 H 0.04 0.90 7.67 -51.93 -0.40 0.51 16 32 H 0.04 0.90 7.56 -51.93 -0.39 0.51 16 33 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 34 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 35 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 36 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -28.30 323.88 -9.04 -37.35 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.56 Total: 5.77 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -0.81 Total: -19.70 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.05 Total: -43.29 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.48 Total: -0.60 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -28.30 -9.04 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381321689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.354 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds