Wall clock time and date at job start Mon Mar 30 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31789 * 122.74690 * 2 1 4 4 C 1.29029 * 117.12025 * 179.74865 * 3 2 1 5 5 S 1.70972 * 110.16952 * 0.50268 * 4 3 2 6 6 C 1.33637 * 122.75429 * 180.30042 * 2 1 3 7 7 C 1.50702 * 126.03601 * 359.97438 * 6 2 1 8 8 H 1.09000 * 109.47212 * 343.58784 * 7 6 2 9 9 C 1.52999 * 109.46933 * 103.58287 * 7 6 2 10 10 N 1.46898 * 109.47649 * 223.58506 * 7 6 2 11 11 C 1.46900 * 111.00122 * 153.53577 * 10 7 6 12 12 C 1.52995 * 109.46930 * 184.99158 * 11 10 7 13 13 C 1.50701 * 115.55167 * 270.88967 * 12 11 10 14 14 H 1.08002 * 119.99966 * 94.79997 * 13 12 11 15 15 C 1.37881 * 119.99882 * 274.79976 * 13 12 11 16 16 N 1.31513 * 119.99746 * 6.09166 * 15 13 12 17 17 Si 1.86799 * 119.99773 * 186.09514 * 15 13 12 18 18 H 1.48492 * 109.47557 * 59.99819 * 17 15 13 19 19 H 1.48507 * 109.47014 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46829 * 299.99498 * 17 15 13 21 21 C 1.53002 * 117.49944 * 125.18007 * 12 11 10 22 22 C 1.52996 * 59.99981 * 252.50902 * 21 12 11 23 23 H 1.08994 * 109.47293 * 269.70290 * 1 2 3 24 24 H 1.08999 * 109.47200 * 29.70921 * 1 2 3 25 25 H 1.09002 * 109.47120 * 149.70337 * 1 2 3 26 26 H 1.07999 * 124.91103 * 180.22506 * 4 3 2 27 27 H 1.08999 * 109.47293 * 179.97438 * 9 7 6 28 28 H 1.08998 * 109.47324 * 300.00541 * 9 7 6 29 29 H 1.09003 * 109.47240 * 60.00037 * 9 7 6 30 30 H 1.00896 * 110.99774 * 277.49542 * 10 7 6 31 31 H 1.08997 * 109.46825 * 304.99041 * 11 10 7 32 32 H 1.09000 * 109.46968 * 64.99290 * 11 10 7 33 33 H 0.96996 * 119.99610 * 185.00988 * 16 15 13 34 34 H 1.08998 * 117.49571 * 359.97438 * 21 12 11 35 35 H 1.08997 * 117.50061 * 145.01852 * 21 12 11 36 36 H 1.09005 * 117.50127 * 252.50619 * 22 21 12 37 37 H 1.09005 * 117.51698 * 107.48031 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0050 5 16 3.9333 -0.6730 -0.0035 6 6 2.2300 -1.1239 -0.0059 7 6 1.6848 -2.5288 -0.0127 8 1 0.6345 -2.5123 0.2781 9 6 1.8156 -3.1197 -1.4179 10 7 2.4432 -3.3531 0.9377 11 6 1.6271 -4.4687 1.4351 12 6 2.4044 -5.2289 2.5115 13 6 3.2786 -6.3502 2.0121 14 1 4.3252 -6.1717 1.8138 15 6 2.7424 -7.6040 1.8083 16 7 1.4470 -7.7935 1.9338 17 14 3.8558 -9.0334 1.3540 18 1 4.8574 -9.2422 2.4302 19 1 3.0403 -10.2637 1.1906 20 1 4.5548 -8.7307 0.0792 21 6 1.7315 -5.4101 3.8736 22 6 2.8987 -4.4328 3.7209 23 1 -0.3633 -0.0053 1.0276 24 1 -0.3633 0.8926 -0.5093 25 1 -0.3633 -0.8873 -0.5184 26 1 4.2059 1.8027 0.0092 27 1 1.4217 -4.1361 -1.4228 28 1 1.2529 -2.5081 -2.1231 29 1 2.8660 -3.1362 -1.7088 30 1 3.2994 -3.6884 0.5225 31 1 0.7019 -4.0803 1.8610 32 1 1.3929 -5.1431 0.6114 33 1 1.0786 -8.6879 1.8623 34 1 0.7352 -4.9874 4.0029 35 1 1.9209 -6.3406 4.4087 36 1 3.8561 -4.7204 4.1557 37 1 2.6705 -3.3673 3.7496 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381321689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:32 Heat of formation + Delta-G solvation = 44.503100 kcal Electronic energy + Delta-G solvation = -18052.215469 eV Core-core repulsion = 15342.080027 eV Total energy + Delta-G solvation = -2710.135442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81523 -38.97038 -37.00905 -33.96955 -32.92876 -30.84929 -28.18064 -27.71181 -26.01777 -25.57682 -23.01128 -22.53809 -21.06205 -19.77493 -18.76483 -17.98496 -16.89549 -16.61731 -16.08152 -15.77194 -15.58706 -15.33380 -14.46637 -14.38417 -14.35828 -13.81961 -13.46756 -13.37582 -13.28555 -13.07055 -12.94264 -12.81991 -12.77160 -12.36799 -12.26886 -11.94108 -11.90244 -11.35069 -10.65946 -10.55238 -10.38637 -10.11994 -9.89654 -9.57108 -9.19550 -8.08435 -6.19542 -0.12016 0.56773 0.97237 1.42763 1.44536 1.51002 1.87917 2.44601 3.17106 3.23630 3.44580 3.75622 3.88680 4.08613 4.26657 4.36589 4.37647 4.44448 4.64846 4.73840 4.74738 4.78794 4.82518 4.90263 5.01514 5.03337 5.10513 5.13164 5.18338 5.32094 5.40497 5.70529 5.72552 5.82532 6.23729 6.45363 6.55135 6.83690 6.90473 7.49262 8.99489 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026867 B = 0.004964 C = 0.004875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.914844 B = 5639.618657 C = 5742.632315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 N -0.495 5.495 4 C 0.006 3.994 5 S 0.151 5.849 6 C -0.201 4.201 7 C 0.157 3.843 8 H 0.093 0.907 9 C -0.169 4.169 10 N -0.673 5.673 11 C 0.127 3.873 12 C 0.025 3.975 13 C -0.508 4.508 14 H 0.052 0.948 15 C 0.029 3.971 16 N -0.905 5.905 17 Si 0.943 3.057 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.271 1.271 21 C -0.167 4.167 22 C -0.169 4.169 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.228 0.772 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.340 0.660 31 H 0.044 0.956 32 H 0.012 0.988 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.447 13.949 -6.017 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 N -0.209 5.209 4 C -0.291 4.291 5 S 0.405 5.595 6 C -0.323 4.323 7 C 0.045 3.955 8 H 0.111 0.889 9 C -0.229 4.229 10 N -0.303 5.303 11 C -0.002 4.002 12 C 0.024 3.976 13 C -0.546 4.546 14 H 0.070 0.930 15 C -0.172 4.172 16 N -0.543 5.543 17 Si 0.769 3.231 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.196 1.196 21 C -0.205 4.205 22 C -0.207 4.207 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.244 0.756 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.158 0.842 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.914 14.254 -5.563 15.420 hybrid contribution -0.438 -1.646 -0.696 1.841 sum 1.475 12.608 -6.259 14.153 Atomic orbital electron populations 1.20384 0.86299 1.03705 1.03174 1.20473 0.99122 0.86143 1.03810 1.66222 1.06080 1.31811 1.16825 1.28804 0.95241 1.01224 1.03876 1.84031 1.06471 1.02565 1.66467 1.25776 0.96010 0.99713 1.10846 1.19874 0.97603 0.86474 0.91552 0.88924 1.22426 1.02627 1.01057 0.96749 1.60602 1.07570 1.23308 1.38838 1.21220 0.93821 0.89107 0.96095 1.18898 0.97610 0.94935 0.86140 1.20730 0.94822 0.94510 1.44543 0.93027 1.25593 0.95806 1.00772 0.94984 1.70110 1.11819 1.21987 1.50370 0.85864 0.79148 0.79239 0.78859 1.20099 1.21311 1.19635 1.22460 0.95118 0.98768 1.04137 1.22718 0.96835 0.95705 1.05417 0.90693 0.90184 0.90009 0.75609 0.92725 0.90592 0.92213 0.84188 0.93794 0.96941 0.93249 0.91276 0.92668 0.91251 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 9.80 71.24 0.70 -0.98 16 2 C 0.04 0.98 6.74 41.52 0.28 1.26 16 3 N -0.49 -13.31 10.53 -191.55 -2.02 -15.33 16 4 C 0.01 0.12 12.23 130.65 1.60 1.72 16 5 S 0.15 3.61 23.09 -56.49 -1.30 2.30 16 6 C -0.20 -5.55 5.49 24.64 0.14 -5.41 16 7 C 0.16 4.61 2.73 44.17 0.12 4.73 16 8 H 0.09 2.70 6.38 -2.39 -0.02 2.69 16 9 C -0.17 -4.52 9.15 71.98 0.66 -3.86 16 10 N -0.67 -23.81 5.91 -495.46 -2.93 -26.73 16 11 C 0.13 5.38 5.51 86.30 0.48 5.86 16 12 C 0.02 1.19 1.58 -52.93 -0.08 1.10 16 13 C -0.51 -26.80 8.78 25.60 0.22 -26.58 16 14 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 15 C 0.03 1.54 5.39 84.66 0.46 2.00 16 16 N -0.91 -50.50 12.91 21.45 0.28 -50.23 16 17 Si 0.94 42.38 29.55 68.60 2.03 44.40 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 C -0.17 -7.86 9.38 30.59 0.29 -7.58 16 22 C -0.17 -7.33 9.76 30.59 0.30 -7.03 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.61 7.06 -2.39 -0.02 1.60 16 26 H 0.23 3.10 8.06 -2.91 -0.02 3.07 16 27 H 0.05 1.61 7.65 -2.39 -0.02 1.59 16 28 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 1.56 8.13 -2.39 -0.02 1.54 16 30 H 0.34 12.42 8.50 -89.70 -0.76 11.65 16 31 H 0.04 1.84 7.67 -2.39 -0.02 1.82 16 32 H 0.01 0.58 7.56 -2.39 -0.02 0.57 16 33 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 34 H 0.07 3.07 8.04 -2.39 -0.02 3.06 16 35 H 0.05 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 Total: -1.00 -59.15 323.88 1.50 -57.65 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.30 Total: 22.71 kcal Atomic # 6 Polarization: -39.92 SS G_CDS: 5.15 Total: -34.77 kcal Atomic # 7 Polarization: -87.62 SS G_CDS: -4.67 Total: -92.29 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.30 Total: 2.30 kcal Total: -59.15 1.50 -57.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381321689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.153 kcal (2) G-P(sol) polarization free energy of solvation -59.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds