Wall clock time and date at job start Mon Mar 30 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31788 * 122.74821 * 2 1 4 4 C 1.29025 * 117.12716 * 179.97438 * 3 2 1 5 5 S 1.70981 * 110.16480 * 359.73083 * 4 3 2 6 6 C 1.33638 * 122.75497 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.03549 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.47016 * 13.84706 * 7 6 2 9 9 C 1.52994 * 109.47161 * 253.84886 * 7 6 2 10 10 N 1.46895 * 109.47068 * 133.84827 * 7 6 2 11 11 C 1.46903 * 110.99922 * 203.97643 * 10 7 6 12 12 C 1.53005 * 109.46990 * 174.28410 * 11 10 7 13 13 C 1.50698 * 115.54815 * 39.73043 * 12 11 10 14 14 H 1.08003 * 120.00207 * 270.24280 * 13 12 11 15 15 C 1.37877 * 120.00046 * 90.24604 * 13 12 11 16 16 N 1.31514 * 120.00058 * 176.77293 * 15 13 12 17 17 Si 1.86809 * 119.99965 * 356.77151 * 15 13 12 18 18 H 1.48493 * 109.47279 * 91.28204 * 17 15 13 19 19 H 1.48502 * 109.47111 * 211.28277 * 17 15 13 20 20 H 1.48500 * 109.46789 * 331.28115 * 17 15 13 21 21 C 1.52999 * 117.49865 * 254.02000 * 12 11 10 22 22 C 1.52997 * 60.00090 * 252.50978 * 21 12 11 23 23 H 1.09007 * 109.47074 * 269.99406 * 1 2 3 24 24 H 1.08999 * 109.47609 * 29.99840 * 1 2 3 25 25 H 1.09001 * 109.47028 * 150.00240 * 1 2 3 26 26 H 1.08003 * 124.91896 * 180.02562 * 4 3 2 27 27 H 1.09007 * 109.47492 * 183.92603 * 9 7 6 28 28 H 1.08997 * 109.47408 * 303.92582 * 9 7 6 29 29 H 1.09002 * 109.47726 * 63.92657 * 9 7 6 30 30 H 1.00899 * 110.99901 * 80.02767 * 10 7 6 31 31 H 1.09006 * 109.46895 * 54.29239 * 11 10 7 32 32 H 1.08998 * 109.47583 * 294.28715 * 11 10 7 33 33 H 0.97007 * 119.99583 * 180.02562 * 16 15 13 34 34 H 1.08993 * 117.49904 * 0.02562 * 21 12 11 35 35 H 1.09011 * 117.49369 * 145.02411 * 21 12 11 36 36 H 1.08997 * 117.50345 * 252.51134 * 22 21 12 37 37 H 1.09002 * 117.51677 * 107.47806 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6730 0.0086 6 6 2.2300 -1.1239 -0.0005 7 6 1.6848 -2.5288 -0.0006 8 1 0.6230 -2.5065 -0.2461 9 6 1.8749 -3.1497 1.3847 10 7 2.4017 -3.3322 -0.9998 11 6 1.5867 -4.4714 -1.4425 12 6 2.3040 -5.1998 -2.5810 13 6 3.7969 -5.3358 -2.4268 14 1 4.4518 -4.5687 -2.8131 15 6 4.3268 -6.4394 -1.7926 16 7 5.6310 -6.5896 -1.7140 17 14 3.1922 -7.7215 -1.0451 18 1 2.9089 -8.7778 -2.0496 19 1 3.8460 -8.3294 0.1416 20 1 1.9198 -7.0762 -0.6329 21 6 1.7535 -5.0138 -3.9963 22 6 1.5575 -6.3450 -3.2681 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2059 1.8028 0.0010 27 1 1.5446 -4.1884 1.3659 28 1 2.9288 -3.1086 1.6598 29 1 1.2867 -2.5947 2.1156 30 1 3.2929 -3.6424 -0.6426 31 1 0.6196 -4.1115 -1.7939 32 1 1.4380 -5.1576 -0.6088 33 1 6.0037 -7.3663 -1.2681 34 1 0.8806 -4.3722 -4.1165 35 1 2.4713 -4.9896 -4.8164 36 1 2.1462 -7.1966 -3.6090 37 1 0.5556 -6.5798 -2.9088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381321690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:35 Heat of formation + Delta-G solvation = 67.237537 kcal Electronic energy + Delta-G solvation = -18254.638593 eV Core-core repulsion = 15545.488991 eV Total energy + Delta-G solvation = -2709.149603 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.71939 -37.59520 -35.72630 -32.08543 -31.82983 -29.73730 -27.10946 -25.84333 -24.78302 -24.31658 -21.62451 -21.44397 -19.26370 -18.52568 -17.64188 -16.37950 -15.66932 -14.95548 -14.80348 -14.43895 -14.34127 -13.67142 -13.36286 -13.23902 -12.72400 -12.66858 -12.51921 -12.35885 -12.26929 -11.87303 -11.64252 -11.19109 -11.09145 -10.75626 -10.68425 -10.39932 -10.06452 -9.58972 -9.42360 -8.99947 -8.97021 -8.63695 -8.54585 -8.41517 -7.66436 -6.11275 -4.12463 0.96258 1.64803 2.06489 2.96337 3.25475 3.35628 3.38493 4.37492 4.39902 4.61311 4.97321 5.11686 5.17494 5.25289 5.25874 5.39347 5.46794 5.64287 5.75323 5.81777 5.86198 5.95600 6.04502 6.11199 6.16201 6.29268 6.33786 6.41083 6.50724 6.53337 6.77663 7.01043 7.17120 7.71898 7.79108 7.90550 8.10689 8.55968 8.96892 9.52303 11.00255 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.006015 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.246198 B = 4653.923701 C = 4972.899300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.041 3.959 3 N -0.471 5.471 4 C -0.010 4.010 5 S 0.158 5.842 6 C -0.180 4.180 7 C 0.152 3.848 8 H 0.092 0.908 9 C -0.180 4.180 10 N -0.665 5.665 11 C 0.097 3.903 12 C 0.008 3.992 13 C -0.477 4.477 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.897 5.897 17 Si 0.876 3.124 18 H -0.280 1.280 19 H -0.297 1.297 20 H -0.260 1.260 21 C -0.175 4.175 22 C -0.208 4.208 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.193 0.807 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.360 0.640 31 H 0.049 0.951 32 H 0.025 0.975 33 H 0.263 0.737 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 9.696 5.744 13.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 N -0.185 5.185 4 C -0.307 4.307 5 S 0.412 5.588 6 C -0.303 4.303 7 C 0.039 3.961 8 H 0.110 0.890 9 C -0.239 4.239 10 N -0.298 5.298 11 C -0.032 4.032 12 C 0.007 3.993 13 C -0.515 4.515 14 H 0.099 0.901 15 C -0.127 4.127 16 N -0.535 5.535 17 Si 0.704 3.296 18 H -0.206 1.206 19 H -0.224 1.224 20 H -0.184 1.184 21 C -0.212 4.212 22 C -0.246 4.246 23 H 0.088 0.912 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.210 0.790 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.182 0.818 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.067 10.011 5.290 13.348 hybrid contribution -1.204 -1.333 1.087 2.099 sum -8.271 8.679 6.377 13.579 Atomic orbital electron populations 1.20298 0.87651 1.03057 1.02314 1.20078 0.97952 0.86245 1.04883 1.66141 1.05197 1.31656 1.15491 1.28182 0.95303 1.00874 1.06318 1.84299 1.06932 1.01613 1.65946 1.25825 0.95270 1.00082 1.09086 1.19950 0.98150 0.86871 0.91161 0.89013 1.22560 1.02566 1.01312 0.97499 1.60480 1.06855 1.24120 1.38356 1.21628 0.94311 0.90300 0.96935 1.19352 0.95193 0.95423 0.89315 1.20263 0.87257 1.06698 1.37244 0.90071 1.24998 0.94667 0.97497 0.95545 1.69903 1.10706 1.29386 1.43495 0.86936 0.81662 0.82292 0.78676 1.20573 1.22403 1.18430 1.22800 1.01712 0.98550 0.98126 1.22970 1.00161 0.93355 1.08082 0.91236 0.91013 0.90810 0.79003 0.91725 0.92083 0.92318 0.81820 0.93281 0.95735 0.92686 0.91159 0.89788 0.89587 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.01 36.00 0.36 -0.50 16 2 C 0.04 0.60 6.74 -84.22 -0.57 0.03 16 3 N -0.47 -7.09 10.53 -11.90 -0.13 -7.21 16 4 C -0.01 -0.13 12.23 51.58 0.63 0.51 16 5 S 0.16 2.26 23.14 -107.50 -2.49 -0.22 16 6 C -0.18 -2.73 5.46 -35.92 -0.20 -2.93 16 7 C 0.15 2.31 2.90 -68.87 -0.20 2.11 16 8 H 0.09 1.30 5.98 -51.93 -0.31 0.99 16 9 C -0.18 -2.51 9.16 37.15 0.34 -2.17 16 10 N -0.67 -12.46 5.91 -107.95 -0.64 -13.10 16 11 C 0.10 1.91 5.48 -3.82 -0.02 1.89 16 12 C 0.01 0.19 1.23 -155.66 -0.19 0.00 16 13 C -0.48 -12.62 8.09 -34.44 -0.28 -12.90 16 14 H 0.08 2.40 8.06 -52.48 -0.42 1.97 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -26.27 13.96 55.43 0.77 -25.50 16 17 Si 0.88 20.97 24.95 -169.99 -4.24 16.72 16 18 H -0.28 -6.70 7.10 56.52 0.40 -6.30 16 19 H -0.30 -7.21 7.11 56.52 0.40 -6.80 16 20 H -0.26 -5.85 5.48 56.52 0.31 -5.54 16 21 C -0.17 -3.58 9.88 -26.73 -0.26 -3.84 16 22 C -0.21 -4.37 7.55 -26.73 -0.20 -4.57 16 23 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.81 6.61 -51.93 -0.34 0.46 16 26 H 0.19 1.83 8.06 -52.48 -0.42 1.41 16 27 H 0.06 0.93 7.40 -51.93 -0.38 0.54 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.36 7.43 7.50 -39.29 -0.29 7.13 16 31 H 0.05 0.88 7.72 -51.93 -0.40 0.47 16 32 H 0.02 0.49 5.84 -51.93 -0.30 0.19 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 35 H 0.08 1.77 8.14 -51.92 -0.42 1.34 16 36 H 0.09 1.92 7.04 -51.93 -0.37 1.56 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -29.34 311.81 -8.14 -37.48 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -5.43 Total: 7.55 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.69 Total: -20.43 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.01 Total: -45.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.24 Total: 16.72 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.49 Total: -0.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.34 -8.14 -37.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381321690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.719 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds