Wall clock time and date at job start Mon Mar 30 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31788 * 122.74821 * 2 1 4 4 C 1.29025 * 117.12716 * 179.97438 * 3 2 1 5 5 S 1.70981 * 110.16480 * 359.73083 * 4 3 2 6 6 C 1.33638 * 122.75497 * 180.02562 * 2 1 3 7 7 C 1.50701 * 126.03549 * 359.97438 * 6 2 1 8 8 H 1.09004 * 109.47016 * 13.84706 * 7 6 2 9 9 C 1.52994 * 109.47161 * 253.84886 * 7 6 2 10 10 N 1.46895 * 109.47068 * 133.84827 * 7 6 2 11 11 C 1.46903 * 110.99922 * 203.97643 * 10 7 6 12 12 C 1.53005 * 109.46990 * 174.28410 * 11 10 7 13 13 C 1.50698 * 115.54815 * 39.73043 * 12 11 10 14 14 H 1.08003 * 120.00207 * 270.24280 * 13 12 11 15 15 C 1.37877 * 120.00046 * 90.24604 * 13 12 11 16 16 N 1.31514 * 120.00058 * 176.77293 * 15 13 12 17 17 Si 1.86809 * 119.99965 * 356.77151 * 15 13 12 18 18 H 1.48493 * 109.47279 * 91.28204 * 17 15 13 19 19 H 1.48502 * 109.47111 * 211.28277 * 17 15 13 20 20 H 1.48500 * 109.46789 * 331.28115 * 17 15 13 21 21 C 1.52999 * 117.49865 * 254.02000 * 12 11 10 22 22 C 1.52997 * 60.00090 * 252.50978 * 21 12 11 23 23 H 1.09007 * 109.47074 * 269.99406 * 1 2 3 24 24 H 1.08999 * 109.47609 * 29.99840 * 1 2 3 25 25 H 1.09001 * 109.47028 * 150.00240 * 1 2 3 26 26 H 1.08003 * 124.91896 * 180.02562 * 4 3 2 27 27 H 1.09007 * 109.47492 * 183.92603 * 9 7 6 28 28 H 1.08997 * 109.47408 * 303.92582 * 9 7 6 29 29 H 1.09002 * 109.47726 * 63.92657 * 9 7 6 30 30 H 1.00899 * 110.99901 * 80.02767 * 10 7 6 31 31 H 1.09006 * 109.46895 * 54.29239 * 11 10 7 32 32 H 1.08998 * 109.47583 * 294.28715 * 11 10 7 33 33 H 0.97007 * 119.99583 * 180.02562 * 16 15 13 34 34 H 1.08993 * 117.49904 * 0.02562 * 21 12 11 35 35 H 1.09011 * 117.49369 * 145.02411 * 21 12 11 36 36 H 1.08997 * 117.50345 * 252.51134 * 22 21 12 37 37 H 1.09002 * 117.51677 * 107.47806 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6730 0.0086 6 6 2.2300 -1.1239 -0.0005 7 6 1.6848 -2.5288 -0.0006 8 1 0.6230 -2.5065 -0.2461 9 6 1.8749 -3.1497 1.3847 10 7 2.4017 -3.3322 -0.9998 11 6 1.5867 -4.4714 -1.4425 12 6 2.3040 -5.1998 -2.5810 13 6 3.7969 -5.3358 -2.4268 14 1 4.4518 -4.5687 -2.8131 15 6 4.3268 -6.4394 -1.7926 16 7 5.6310 -6.5896 -1.7140 17 14 3.1922 -7.7215 -1.0451 18 1 2.9089 -8.7778 -2.0496 19 1 3.8460 -8.3294 0.1416 20 1 1.9198 -7.0762 -0.6329 21 6 1.7535 -5.0138 -3.9963 22 6 1.5575 -6.3450 -3.2681 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2059 1.8028 0.0010 27 1 1.5446 -4.1884 1.3659 28 1 2.9288 -3.1086 1.6598 29 1 1.2867 -2.5947 2.1156 30 1 3.2929 -3.6424 -0.6426 31 1 0.6196 -4.1115 -1.7939 32 1 1.4380 -5.1576 -0.6088 33 1 6.0037 -7.3663 -1.2681 34 1 0.8806 -4.3722 -4.1165 35 1 2.4713 -4.9896 -4.8164 36 1 2.1462 -7.1966 -3.6090 37 1 0.5556 -6.5798 -2.9088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381321690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:35 Heat of formation + Delta-G solvation = 47.867819 kcal Electronic energy + Delta-G solvation = -18255.478527 eV Core-core repulsion = 15545.488991 eV Total energy + Delta-G solvation = -2709.989537 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81146 -39.16556 -37.12313 -34.16895 -32.97606 -30.93621 -28.14862 -27.78136 -26.10161 -25.59361 -23.24653 -22.68368 -20.94111 -19.77488 -18.77004 -18.16320 -17.03939 -16.72670 -16.01512 -15.78006 -15.63549 -15.28649 -14.72153 -14.41940 -14.38843 -13.94120 -13.83822 -13.43719 -13.37907 -13.27277 -13.06437 -12.79678 -12.51838 -12.25069 -12.05558 -11.88204 -11.85075 -11.40993 -10.84999 -10.65272 -10.51735 -10.26388 -10.07628 -9.58596 -9.09138 -8.22711 -6.26834 -0.12524 0.56566 0.98391 1.36051 1.39549 1.50304 1.87987 2.39849 3.09792 3.14093 3.40104 3.56356 3.87493 4.08245 4.23108 4.26418 4.36238 4.42224 4.45678 4.53011 4.70149 4.74322 4.81301 4.83718 4.88792 4.90013 5.01787 5.05773 5.13416 5.17853 5.35768 5.43465 5.53034 5.80130 6.29552 6.46452 6.56636 6.81932 6.83538 7.40656 8.92647 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.006015 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.246198 B = 4653.923701 C = 4972.899300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.038 3.962 3 N -0.493 5.493 4 C 0.008 3.992 5 S 0.125 5.875 6 C -0.199 4.199 7 C 0.156 3.844 8 H 0.109 0.891 9 C -0.174 4.174 10 N -0.678 5.678 11 C 0.106 3.894 12 C -0.018 4.018 13 C -0.466 4.466 14 H 0.032 0.968 15 C 0.022 3.978 16 N -0.949 5.949 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.304 1.304 20 H -0.230 1.230 21 C -0.165 4.165 22 C -0.200 4.200 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.226 0.774 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.343 0.657 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.262 0.738 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 10.251 6.386 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 N -0.207 5.207 4 C -0.289 4.289 5 S 0.379 5.621 6 C -0.321 4.321 7 C 0.043 3.957 8 H 0.127 0.873 9 C -0.234 4.234 10 N -0.310 5.310 11 C -0.023 4.023 12 C -0.019 4.019 13 C -0.504 4.504 14 H 0.050 0.950 15 C -0.175 4.175 16 N -0.589 5.589 17 Si 0.759 3.241 18 H -0.203 1.203 19 H -0.231 1.231 20 H -0.153 1.153 21 C -0.202 4.202 22 C -0.238 4.238 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.242 0.758 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.113 10.586 5.922 15.792 hybrid contribution -0.190 -1.352 0.813 1.589 sum -10.302 9.233 6.735 15.387 Atomic orbital electron populations 1.20408 0.85623 1.03657 1.03605 1.20562 0.99375 0.85883 1.03605 1.66231 1.05844 1.31903 1.16727 1.28763 0.95362 1.00851 1.03956 1.84461 1.07743 1.03214 1.66633 1.25819 0.95158 1.00246 1.10917 1.19998 0.98472 0.86304 0.90882 0.87312 1.22491 1.02186 1.01313 0.97384 1.60445 1.06471 1.23985 1.40067 1.21527 0.94904 0.90326 0.95584 1.19381 0.92986 0.97818 0.91685 1.20308 0.89465 1.04925 1.35690 0.94971 1.25738 0.95779 0.99733 0.96269 1.70056 1.12902 1.30407 1.45529 0.86007 0.80866 0.79705 0.77514 1.20335 1.23124 1.15309 1.22825 1.02126 0.98883 0.96349 1.22996 1.01080 0.92517 1.07198 0.89527 0.90644 0.89938 0.75757 0.92016 0.93329 0.90139 0.83709 0.90633 0.95926 0.92901 0.88070 0.91355 0.91378 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.50 10.01 71.23 0.71 -0.79 16 2 C 0.04 1.03 6.74 41.52 0.28 1.31 16 3 N -0.49 -13.92 10.53 -191.55 -2.02 -15.93 16 4 C 0.01 0.20 12.23 130.65 1.60 1.79 16 5 S 0.13 3.57 23.14 -56.49 -1.31 2.26 16 6 C -0.20 -5.77 5.46 24.64 0.13 -5.64 16 7 C 0.16 4.44 2.90 44.17 0.13 4.57 16 8 H 0.11 2.71 5.98 -2.39 -0.01 2.69 16 9 C -0.17 -4.55 9.16 71.98 0.66 -3.89 16 10 N -0.68 -24.74 5.91 -495.44 -2.93 -27.67 16 11 C 0.11 3.86 5.48 86.30 0.47 4.33 16 12 C -0.02 -0.76 1.23 -52.93 -0.06 -0.83 16 13 C -0.47 -25.23 8.09 25.60 0.21 -25.03 16 14 H 0.03 2.01 8.06 -2.91 -0.02 1.98 16 15 C 0.02 1.22 5.47 84.65 0.46 1.68 16 16 N -0.95 -57.74 13.96 21.45 0.30 -57.44 16 17 Si 0.93 42.95 24.95 68.60 1.71 44.66 16 18 H -0.28 -12.61 7.10 99.48 0.71 -11.90 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.23 -9.42 5.48 99.48 0.54 -8.87 16 21 C -0.16 -6.38 9.88 30.59 0.30 -6.08 16 22 C -0.20 -7.84 7.55 30.59 0.23 -7.61 16 23 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.08 1.52 6.61 -2.39 -0.02 1.51 16 26 H 0.23 3.76 8.06 -2.91 -0.02 3.74 16 27 H 0.06 1.63 7.40 -2.38 -0.02 1.62 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.34 14.40 7.50 -89.69 -0.67 13.73 16 31 H 0.08 2.36 7.72 -2.38 -0.02 2.35 16 32 H 0.02 0.83 5.84 -2.39 -0.01 0.82 16 33 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 34 H 0.10 3.30 8.08 -2.39 -0.02 3.28 16 35 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 36 H 0.07 2.91 7.04 -2.39 -0.02 2.90 16 37 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -64.62 311.81 1.12 -63.51 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.24 Total: 26.79 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 5.12 Total: -36.18 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -4.65 Total: -101.05 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.71 Total: 44.66 kcal Atomic # 16 Polarization: 3.57 SS G_CDS: -1.31 Total: 2.26 kcal Total: -64.62 1.12 -63.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381321690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.374 kcal (2) G-P(sol) polarization free energy of solvation -64.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds