Wall clock time and date at job start Mon Mar 30 2020 07:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99955 * 2 1 4 4 C 1.52995 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46874 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47164 * 55.00455 * 5 4 3 7 7 C 1.53005 * 109.46819 * 175.00131 * 5 4 3 8 8 N 1.46501 * 109.47474 * 294.99676 * 5 4 3 9 9 C 1.32209 * 119.99633 * 127.05977 * 8 5 4 10 10 C 1.46910 * 120.83714 * 6.14937 * 9 8 5 11 11 C 1.34383 * 119.37296 * 179.97438 * 10 9 8 12 12 N 1.36423 * 121.21636 * 359.97438 * 11 10 9 13 13 H 0.97005 * 119.08645 * 180.02562 * 12 11 10 14 14 C 1.37763 * 121.82367 * 0.02725 * 12 11 10 15 15 C 1.40177 * 119.74496 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00194 * 201.90921 * 15 14 12 17 17 C 1.40355 * 119.99865 * 21.90926 * 15 14 12 18 18 N 1.30586 * 120.00232 * 18.06287 * 17 15 14 19 19 Si 1.86803 * 120.00075 * 198.05593 * 17 15 14 20 20 H 1.48501 * 109.46817 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46791 * 120.00092 * 19 17 15 22 22 H 1.48491 * 109.47187 * 240.00119 * 19 17 15 23 23 C 1.39066 * 120.51074 * 359.68871 * 14 12 11 24 24 H 1.08997 * 109.46936 * 299.99899 * 1 2 3 25 25 H 1.08995 * 109.47180 * 60.00334 * 1 2 3 26 26 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47407 * 59.99437 * 3 2 1 28 28 H 1.08999 * 109.46967 * 300.00195 * 3 2 1 29 29 H 1.09001 * 109.47042 * 59.99865 * 4 3 2 30 30 H 1.08999 * 109.47382 * 299.99978 * 4 3 2 31 31 H 1.09000 * 109.47328 * 180.02562 * 7 5 4 32 32 H 1.09002 * 109.47095 * 299.99917 * 7 5 4 33 33 H 1.08995 * 109.47363 * 59.99830 * 7 5 4 34 34 H 1.07998 * 120.31627 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.39028 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00086 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.62608 * 180.28226 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0864 3.4308 0.0000 6 1 3.5934 3.9178 0.8413 7 6 5.6013 3.6045 0.1263 8 7 3.6281 4.0373 -1.2524 9 6 2.8552 5.1095 -1.2235 10 6 2.5542 5.7869 0.0449 11 6 1.7655 6.8749 0.0400 12 7 1.2398 7.3620 -1.1208 13 1 0.6745 8.1497 -1.0885 14 6 1.4894 6.7661 -2.3375 15 6 0.9261 7.3030 -3.5035 16 1 0.8088 6.6845 -4.3810 17 6 0.5145 8.6446 -3.5305 18 7 0.9587 9.4821 -2.6325 19 14 -0.6687 9.2322 -4.8512 20 1 -1.0206 8.0967 -5.7412 21 1 -1.9009 9.7602 -4.2124 22 1 -0.0256 10.3065 -5.6495 23 6 2.3006 5.6395 -2.4188 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8031 2.2372 0.8899 28 1 1.8031 2.2371 -0.8900 29 1 4.1616 1.4703 -0.8891 30 1 4.1609 1.4705 0.8908 31 1 5.8465 4.6666 0.1263 32 1 5.9423 3.1533 1.0581 33 1 6.0943 3.1175 -0.7149 34 1 2.9636 5.4146 0.9723 35 1 1.5444 7.3734 0.9722 36 1 0.6740 10.4092 -2.6509 37 1 2.5012 5.1735 -3.3723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381383015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:05 Heat of formation + Delta-G solvation = 19.171110 kcal Electronic energy + Delta-G solvation = -17620.107478 eV Core-core repulsion = 14908.873558 eV Total energy + Delta-G solvation = -2711.233919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.62311 -36.22982 -34.05549 -32.32767 -30.64487 -29.76450 -28.78146 -27.63146 -25.98042 -23.35460 -21.77299 -21.14935 -19.18737 -18.06508 -16.65797 -15.90195 -15.59431 -15.28918 -14.79091 -14.08736 -13.85484 -13.79805 -13.40734 -13.10921 -12.93328 -12.76278 -12.52984 -12.08700 -12.01526 -11.70563 -11.60687 -11.14694 -10.98055 -10.76517 -10.72147 -10.55871 -10.29633 -10.13338 -9.76599 -9.68577 -9.34804 -8.27954 -7.51014 -7.48189 -7.32335 -5.99874 -4.79948 1.92446 2.54699 2.71560 2.83773 2.85823 2.92646 3.12762 3.61900 4.24464 4.59294 5.19684 5.22424 5.26875 5.29391 5.41050 5.55474 5.69524 5.75353 5.84224 6.02806 6.09551 6.26921 6.31499 6.38521 6.50318 6.66089 6.68861 6.77276 6.79202 6.86479 6.96858 7.37881 7.65671 7.74062 7.95938 8.24133 8.26766 8.77927 8.90027 9.66357 9.73713 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.004513 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.334383 B = 6202.383181 C = 6948.843024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.291 6.291 3 C -0.063 4.063 4 C -0.083 4.083 5 C 0.087 3.913 6 H 0.033 0.967 7 C -0.136 4.136 8 N -0.661 5.661 9 C 0.284 3.716 10 C -0.303 4.303 11 C 0.125 3.875 12 N -0.603 5.603 13 H 0.413 0.587 14 C 0.329 3.671 15 C -0.466 4.466 16 H 0.103 0.897 17 C 0.077 3.923 18 N -0.812 5.812 19 Si 0.922 3.078 20 H -0.255 1.255 21 H -0.269 1.269 22 H -0.270 1.270 23 C -0.359 4.359 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.039 0.961 33 H 0.053 0.947 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.292 0.708 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.401 -3.920 5.383 7.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.065 6.065 3 C -0.211 4.211 4 C -0.122 4.122 5 C -0.027 4.027 6 H 0.051 0.949 7 C -0.194 4.194 8 N -0.388 5.388 9 C 0.121 3.879 10 C -0.333 4.333 11 C -0.004 4.004 12 N -0.214 5.214 13 H 0.253 0.747 14 C 0.221 3.779 15 C -0.499 4.499 16 H 0.121 0.879 17 C -0.141 4.141 18 N -0.440 5.440 19 Si 0.745 3.255 20 H -0.178 1.178 21 H -0.194 1.194 22 H -0.195 1.195 23 C -0.388 4.388 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.262 -5.277 4.940 7.574 hybrid contribution -1.693 2.223 0.485 2.836 sum -3.955 -3.054 5.425 7.375 Atomic orbital electron populations 1.23296 0.94626 1.05802 1.04866 1.86636 1.07103 1.14661 1.98134 1.23372 1.01489 0.91169 1.05080 1.21312 0.91573 0.97784 1.01533 1.21234 0.94197 0.92876 0.94398 0.94910 1.21812 0.96910 1.00809 0.99860 1.73422 1.25967 1.17262 1.22175 1.20222 0.87894 0.89334 0.90414 1.22310 1.09709 1.01691 0.99640 1.21244 0.94749 0.95019 0.89429 1.42067 1.45289 1.29899 1.04110 0.74695 1.17629 0.88019 0.88761 0.83513 1.19554 1.35994 0.95537 0.98778 0.87865 1.26204 0.94363 0.96323 0.97249 1.69351 1.34933 1.05813 1.33878 0.86002 0.79507 0.79579 0.80385 1.17800 1.19430 1.19503 1.20194 1.15476 1.06796 0.96378 0.90881 0.90486 0.88626 0.91278 0.89031 0.91143 0.92609 0.93515 0.94163 0.92824 0.86661 0.85319 0.89698 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.76 101.05 1.09 -0.33 16 2 S -0.29 -4.50 22.38 -107.50 -2.41 -6.90 16 3 C -0.06 -1.08 5.83 37.16 0.22 -0.87 16 4 C -0.08 -1.45 4.90 -26.73 -0.13 -1.58 16 5 C 0.09 1.69 2.79 -67.93 -0.19 1.50 16 6 H 0.03 0.64 5.34 -51.93 -0.28 0.36 16 7 C -0.14 -2.40 9.52 37.16 0.35 -2.05 16 8 N -0.66 -15.35 9.67 -50.79 -0.49 -15.84 16 9 C 0.28 6.76 6.80 -82.74 -0.56 6.20 16 10 C -0.30 -6.33 9.33 -37.43 -0.35 -6.67 16 11 C 0.13 2.42 11.15 -16.87 -0.19 2.23 16 12 N -0.60 -12.89 4.89 -10.84 -0.05 -12.95 16 13 H 0.41 8.46 6.32 -40.82 -0.26 8.20 16 14 C 0.33 7.90 6.37 -84.16 -0.54 7.37 16 15 C -0.47 -10.88 9.02 -38.06 -0.34 -11.23 16 16 H 0.10 2.37 7.91 -52.49 -0.42 1.95 16 17 C 0.08 1.64 5.17 -17.29 -0.09 1.56 16 18 N -0.81 -17.47 11.13 55.57 0.62 -16.85 16 19 Si 0.92 16.14 29.60 -169.99 -5.03 11.10 16 20 H -0.25 -4.51 7.11 56.52 0.40 -4.11 16 21 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 22 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 23 C -0.36 -8.99 9.83 -37.82 -0.37 -9.36 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 28 H 0.09 1.80 7.75 -51.92 -0.40 1.40 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.12 2.20 6.01 -52.49 -0.32 1.89 16 35 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.29 5.63 8.29 -40.82 -0.34 5.29 16 37 H 0.11 2.89 8.06 -52.49 -0.42 2.47 16 LS Contribution 321.47 15.07 4.84 4.84 Total: -1.00 -25.66 321.47 -9.08 -34.74 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -5.45 Total: 15.10 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.10 Total: -13.25 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.07 Total: -45.64 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.03 Total: 11.10 kcal Atomic # 16 Polarization: -4.50 SS G_CDS: -2.41 Total: -6.90 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -25.66 -9.08 -34.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381383015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.907 kcal (2) G-P(sol) polarization free energy of solvation -25.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds