Wall clock time and date at job start Mon Mar 30 2020 07:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81402 * 102.99955 * 2 1 4 4 C 1.52995 * 109.47137 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.46874 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47164 * 55.00455 * 5 4 3 7 7 C 1.53005 * 109.46819 * 175.00131 * 5 4 3 8 8 N 1.46501 * 109.47474 * 294.99676 * 5 4 3 9 9 C 1.32209 * 119.99633 * 127.05977 * 8 5 4 10 10 C 1.46910 * 120.83714 * 6.14937 * 9 8 5 11 11 C 1.34383 * 119.37296 * 179.97438 * 10 9 8 12 12 N 1.36423 * 121.21636 * 359.97438 * 11 10 9 13 13 H 0.97005 * 119.08645 * 180.02562 * 12 11 10 14 14 C 1.37763 * 121.82367 * 0.02725 * 12 11 10 15 15 C 1.40177 * 119.74496 * 179.97438 * 14 12 11 16 16 H 1.07999 * 120.00194 * 201.90921 * 15 14 12 17 17 C 1.40355 * 119.99865 * 21.90926 * 15 14 12 18 18 N 1.30586 * 120.00232 * 18.06287 * 17 15 14 19 19 Si 1.86803 * 120.00075 * 198.05593 * 17 15 14 20 20 H 1.48501 * 109.46817 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46791 * 120.00092 * 19 17 15 22 22 H 1.48491 * 109.47187 * 240.00119 * 19 17 15 23 23 C 1.39066 * 120.51074 * 359.68871 * 14 12 11 24 24 H 1.08997 * 109.46936 * 299.99899 * 1 2 3 25 25 H 1.08995 * 109.47180 * 60.00334 * 1 2 3 26 26 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47407 * 59.99437 * 3 2 1 28 28 H 1.08999 * 109.46967 * 300.00195 * 3 2 1 29 29 H 1.09001 * 109.47042 * 59.99865 * 4 3 2 30 30 H 1.08999 * 109.47382 * 299.99978 * 4 3 2 31 31 H 1.09000 * 109.47328 * 180.02562 * 7 5 4 32 32 H 1.09002 * 109.47095 * 299.99917 * 7 5 4 33 33 H 1.08995 * 109.47363 * 59.99830 * 7 5 4 34 34 H 1.07998 * 120.31627 * 0.02562 * 10 9 8 35 35 H 1.07995 * 119.39028 * 180.02562 * 11 10 9 36 36 H 0.96997 * 120.00086 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.62608 * 180.28226 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0864 3.4308 0.0000 6 1 3.5934 3.9178 0.8413 7 6 5.6013 3.6045 0.1263 8 7 3.6281 4.0373 -1.2524 9 6 2.8552 5.1095 -1.2235 10 6 2.5542 5.7869 0.0449 11 6 1.7655 6.8749 0.0400 12 7 1.2398 7.3620 -1.1208 13 1 0.6745 8.1497 -1.0885 14 6 1.4894 6.7661 -2.3375 15 6 0.9261 7.3030 -3.5035 16 1 0.8088 6.6845 -4.3810 17 6 0.5145 8.6446 -3.5305 18 7 0.9587 9.4821 -2.6325 19 14 -0.6687 9.2322 -4.8512 20 1 -1.0206 8.0967 -5.7412 21 1 -1.9009 9.7602 -4.2124 22 1 -0.0256 10.3065 -5.6495 23 6 2.3006 5.6395 -2.4188 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8031 2.2372 0.8899 28 1 1.8031 2.2371 -0.8900 29 1 4.1616 1.4703 -0.8891 30 1 4.1609 1.4705 0.8908 31 1 5.8465 4.6666 0.1263 32 1 5.9423 3.1533 1.0581 33 1 6.0943 3.1175 -0.7149 34 1 2.9636 5.4146 0.9723 35 1 1.5444 7.3734 0.9722 36 1 0.6740 10.4092 -2.6509 37 1 2.5012 5.1735 -3.3723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381383015.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:05 Heat of formation + Delta-G solvation = 5.623248 kcal Electronic energy + Delta-G solvation = -17620.694957 eV Core-core repulsion = 14908.873558 eV Total energy + Delta-G solvation = -2711.821399 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30751 -37.80918 -35.72094 -33.95941 -32.35155 -31.22219 -29.79711 -29.28182 -27.71823 -24.80015 -23.43090 -22.78556 -20.78114 -19.76273 -18.37053 -17.24091 -17.09971 -16.82691 -16.43722 -15.56421 -15.27043 -15.12757 -14.76319 -14.56246 -14.35516 -14.15849 -13.85043 -13.57415 -13.40376 -13.26668 -13.13124 -12.79609 -12.46507 -12.38819 -12.19425 -12.04337 -11.83745 -11.65711 -11.33024 -11.04807 -10.95288 -9.98811 -9.18910 -8.97933 -8.73034 -7.71424 -6.62262 0.72863 0.95310 1.11008 1.41541 1.55427 1.61089 1.64114 2.15797 2.56346 2.93639 3.51666 3.84191 3.95640 4.12320 4.21719 4.27085 4.30487 4.38816 4.52885 4.62763 4.77670 4.80677 4.82727 4.90503 4.97453 5.05121 5.06598 5.17474 5.18690 5.36174 5.46182 5.67827 5.87005 6.01169 6.12208 6.51015 6.52009 7.03018 7.21067 8.02390 8.03936 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.021266 B = 0.004513 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.334383 B = 6202.383181 C = 6948.843024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.308 6.308 3 C -0.055 4.055 4 C -0.075 4.075 5 C 0.081 3.919 6 H 0.037 0.963 7 C -0.130 4.130 8 N -0.689 5.689 9 C 0.268 3.732 10 C -0.319 4.319 11 C 0.135 3.865 12 N -0.603 5.603 13 H 0.417 0.583 14 C 0.320 3.680 15 C -0.496 4.496 16 H 0.093 0.907 17 C 0.051 3.949 18 N -0.822 5.822 19 Si 0.993 3.007 20 H -0.263 1.263 21 H -0.253 1.253 22 H -0.266 1.266 23 C -0.403 4.403 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.044 0.956 34 H 0.134 0.866 35 H 0.181 0.819 36 H 0.306 0.694 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.668 -3.123 6.919 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.082 6.082 3 C -0.203 4.203 4 C -0.114 4.114 5 C -0.032 4.032 6 H 0.055 0.945 7 C -0.188 4.188 8 N -0.416 5.416 9 C 0.104 3.896 10 C -0.348 4.348 11 C 0.006 3.994 12 N -0.215 5.215 13 H 0.258 0.742 14 C 0.211 3.789 15 C -0.528 4.528 16 H 0.111 0.889 17 C -0.167 4.167 18 N -0.449 5.449 19 Si 0.813 3.187 20 H -0.186 1.186 21 H -0.177 1.177 22 H -0.190 1.190 23 C -0.433 4.433 24 H 0.104 0.896 25 H 0.092 0.908 26 H 0.138 0.862 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.152 0.848 35 H 0.198 0.802 36 H 0.118 0.882 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.507 -4.482 6.503 8.642 hybrid contribution -1.305 1.977 -0.002 2.369 sum -4.812 -2.505 6.502 8.468 Atomic orbital electron populations 1.23402 0.91436 1.07574 1.05367 1.86632 1.10648 1.12810 1.98138 1.23156 1.01073 0.92456 1.03638 1.21224 0.91984 0.96465 1.01708 1.21381 0.95197 0.93686 0.92949 0.94513 1.21755 0.95599 1.00229 1.01202 1.73319 1.25786 1.17397 1.25081 1.20335 0.88127 0.89850 0.91279 1.22382 1.10997 1.02485 0.98948 1.21915 0.92859 0.94271 0.90325 1.42064 1.45538 1.29954 1.03936 0.74188 1.17712 0.87647 0.88616 0.84959 1.19731 1.37446 0.96900 0.98677 0.88908 1.26899 0.95011 0.95414 0.99353 1.69325 1.34484 1.06664 1.34400 0.84967 0.77625 0.78620 0.77533 1.18641 1.17726 1.19027 1.20118 1.18376 1.08717 0.96044 0.89586 0.90802 0.86172 0.90600 0.92437 0.92894 0.90276 0.94702 0.90893 0.93689 0.84810 0.80157 0.88209 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.45 10.76 113.37 1.22 -1.23 16 2 S -0.31 -9.25 22.38 -56.49 -1.26 -10.52 16 3 C -0.05 -1.89 5.83 71.98 0.42 -1.47 16 4 C -0.07 -2.61 4.90 30.59 0.15 -2.46 16 5 C 0.08 3.16 2.79 44.99 0.13 3.28 16 6 H 0.04 1.40 5.34 -2.39 -0.01 1.39 16 7 C -0.13 -4.52 9.52 71.98 0.69 -3.84 16 8 N -0.69 -33.27 9.67 -314.60 -3.04 -36.31 16 9 C 0.27 13.23 6.80 42.30 0.29 13.52 16 10 C -0.32 -13.15 9.33 23.66 0.22 -12.93 16 11 C 0.14 5.00 11.15 83.10 0.93 5.93 16 12 N -0.60 -25.58 4.89 -188.19 -0.92 -26.50 16 13 H 0.42 16.61 6.32 -92.70 -0.59 16.03 16 14 C 0.32 15.87 6.37 38.88 0.25 16.12 16 15 C -0.50 -23.84 9.02 23.26 0.21 -23.63 16 16 H 0.09 4.50 7.91 -2.91 -0.02 4.48 16 17 C 0.05 2.15 5.17 85.39 0.44 2.60 16 18 N -0.82 -34.24 11.13 21.89 0.24 -33.99 16 19 Si 0.99 32.06 29.60 68.60 2.03 34.09 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 21 H -0.25 -7.54 7.11 99.48 0.71 -6.83 16 22 H -0.27 -8.39 7.11 99.48 0.71 -7.69 16 23 C -0.40 -21.49 9.83 23.41 0.23 -21.26 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.06 2.36 7.75 -2.39 -0.02 2.34 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.13 4.92 6.01 -2.91 -0.02 4.91 16 35 H 0.18 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.31 11.13 8.29 -92.71 -0.77 10.36 16 37 H 0.08 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -57.88 321.47 2.68 -55.20 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: 0.47 Total: 43.41 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 5.16 Total: -25.38 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -3.72 Total: -96.80 kcal Atomic # 14 Polarization: 32.06 SS G_CDS: 2.03 Total: 34.09 kcal Atomic # 16 Polarization: -9.25 SS G_CDS: -1.26 Total: -10.52 kcal Total: -57.88 2.68 -55.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381383015.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.823 kcal (2) G-P(sol) polarization free energy of solvation -57.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds