Wall clock time and date at job start Mon Mar 30 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33647 * 122.75096 * 2 1 4 4 S 1.76200 * 107.92251 * 180.02562 * 3 2 1 5 5 C 1.70972 * 90.28404 * 359.97438 * 4 3 2 6 6 C 1.50702 * 124.91369 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47294 * 195.02365 * 6 5 4 8 8 N 1.46905 * 109.47206 * 315.02646 * 6 5 4 9 9 C 1.46901 * 110.99870 * 205.00135 * 8 6 5 10 10 H 1.09000 * 109.47473 * 34.99539 * 9 8 6 11 11 C 1.53003 * 109.47021 * 274.99736 * 9 8 6 12 12 C 1.50693 * 109.47182 * 155.00014 * 9 8 6 13 13 H 1.08005 * 119.99854 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31511 * 119.99935 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99899 * 180.02562 * 14 12 9 17 17 H 1.48508 * 109.47177 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47276 * 120.00245 * 16 14 12 19 19 H 1.48507 * 109.47088 * 240.00288 * 16 14 12 20 20 C 1.53002 * 109.47093 * 75.02656 * 6 5 4 21 21 C 1.52995 * 117.49760 * 128.74656 * 20 6 5 22 22 C 1.53002 * 117.49831 * 60.08592 * 20 6 5 23 23 N 1.29025 * 110.16993 * 0.24586 * 5 4 3 24 24 H 1.09005 * 109.46672 * 89.97572 * 1 2 3 25 25 H 1.08995 * 109.46973 * 209.97675 * 1 2 3 26 26 H 1.08998 * 109.46827 * 329.97731 * 1 2 3 27 27 H 1.07998 * 126.03185 * 359.96329 * 3 2 1 28 28 H 1.00901 * 110.99869 * 81.04847 * 8 6 5 29 29 H 1.08996 * 109.47234 * 300.00507 * 11 9 8 30 30 H 1.09007 * 109.47106 * 60.00477 * 11 9 8 31 31 H 1.08993 * 109.47190 * 180.02562 * 11 9 8 32 32 H 0.97003 * 119.99872 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.54748 * 274.41800 * 20 6 5 34 34 H 1.08995 * 117.50192 * 359.97438 * 21 20 6 35 35 H 1.09006 * 117.49879 * 145.02323 * 21 20 6 36 36 H 1.09000 * 117.49262 * 214.98071 * 22 20 6 37 37 H 1.08995 * 117.49590 * 359.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0002 6 6 4.4835 -2.1271 -0.0010 7 1 3.9652 -3.0484 -0.2669 8 7 5.5455 -1.8624 -0.9810 9 6 6.1536 -3.1149 -1.4494 10 1 5.3906 -3.8915 -1.5030 11 6 7.2512 -3.5450 -0.4741 12 6 6.7513 -2.9027 -2.8164 13 1 6.6856 -1.9342 -3.2900 14 6 7.3820 -3.9447 -3.4624 15 7 7.4615 -5.1240 -2.8859 16 14 8.1235 -3.6813 -5.1566 17 1 7.9008 -2.2758 -5.5814 18 1 9.5814 -3.9590 -5.1075 19 1 7.4771 -4.5999 -6.1281 20 6 5.0995 -2.2723 1.3919 21 6 5.0718 -3.6601 2.0354 22 6 4.1504 -2.5551 2.5581 23 7 2.2199 -1.1083 -0.0048 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 1.8391 2.1308 -0.0006 28 1 6.2437 -1.2423 -0.5988 29 1 8.0142 -2.7684 -0.4204 30 1 6.8189 -3.6986 0.5147 31 1 7.7027 -4.4740 -0.8219 32 1 7.9049 -5.8572 -3.3406 33 1 5.9669 -1.6427 1.5903 34 1 4.6144 -4.4695 1.4666 35 1 5.9209 -3.9434 2.6576 36 1 4.3936 -2.1119 3.5238 37 1 3.0871 -2.6374 2.3330 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381411869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:03 Heat of formation + Delta-G solvation = 66.630947 kcal Electronic energy + Delta-G solvation = -18156.270861 eV Core-core repulsion = 15447.094954 eV Total energy + Delta-G solvation = -2709.175906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.69640 -37.99349 -35.05652 -32.78550 -31.63181 -29.11761 -27.42916 -25.58369 -25.09495 -22.83976 -22.07752 -20.60666 -20.14739 -19.17873 -17.40166 -16.34814 -15.76020 -15.14866 -14.66154 -14.63328 -14.12985 -13.62740 -13.49017 -12.93987 -12.50845 -12.42885 -12.30527 -12.23167 -11.72007 -11.32748 -11.11688 -11.01366 -10.91914 -10.87101 -10.67006 -10.21113 -10.12821 -9.96950 -9.79980 -9.30788 -9.08150 -8.91020 -8.38247 -8.35130 -7.44712 -5.98452 -4.01618 1.03803 1.72041 2.13804 3.05952 3.32157 3.40053 3.45384 3.92188 4.28440 4.47807 4.95023 5.07522 5.13903 5.25302 5.33495 5.34403 5.39484 5.50634 5.61401 5.73893 5.79446 5.84778 5.92031 6.06514 6.13930 6.36147 6.41398 6.46980 6.75067 6.91764 7.09398 7.29205 7.74455 7.85483 8.08174 8.22139 8.42229 8.54846 9.04922 9.63460 11.08347 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.005745 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.409447 B = 4872.904840 C = 5620.596264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.069 3.931 3 C -0.290 4.290 4 S 0.133 5.867 5 C 0.103 3.897 6 C 0.187 3.813 7 H 0.103 0.897 8 N -0.672 5.672 9 C 0.218 3.782 10 H 0.035 0.965 11 C -0.176 4.176 12 C -0.496 4.496 13 H 0.063 0.937 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.171 4.171 21 C -0.160 4.160 22 C -0.181 4.181 23 N -0.485 5.485 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.169 0.831 28 H 0.330 0.670 29 H 0.024 0.976 30 H 0.023 0.977 31 H 0.087 0.913 32 H 0.259 0.741 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 9.179 9.908 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.429 4.429 4 S 0.389 5.611 5 C -0.176 4.176 6 C 0.073 3.927 7 H 0.121 0.879 8 N -0.301 5.301 9 C 0.111 3.889 10 H 0.053 0.947 11 C -0.235 4.235 12 C -0.535 4.535 13 H 0.081 0.919 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.193 4.193 21 C -0.197 4.197 22 C -0.219 4.219 23 N -0.200 5.200 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.186 0.814 28 H 0.147 0.853 29 H 0.043 0.957 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.991 9.072 9.280 15.240 hybrid contribution 0.116 -0.128 -0.205 0.268 sum -7.875 8.944 9.075 14.978 Atomic orbital electron populations 1.20306 0.87744 1.02795 1.02669 1.20219 0.97902 0.86798 1.01514 1.26714 0.96077 1.03493 1.16651 1.83888 1.06374 1.03686 1.67135 1.27177 0.93530 0.97890 0.99018 1.19709 0.90983 0.92927 0.89122 0.87897 1.60873 1.14782 1.18710 1.35720 1.19210 0.91841 0.84580 0.93302 0.94686 1.22567 1.00255 1.03477 0.97182 1.21173 1.34455 0.97140 1.00710 0.91916 1.24919 0.96353 0.95167 0.97961 1.69892 1.44390 1.01449 1.37796 0.86469 0.78610 0.78236 0.84243 1.19760 1.21213 1.21164 1.23156 1.01307 1.00829 0.93976 1.22942 1.01707 0.91940 1.03093 1.22982 0.97431 1.03880 0.97613 1.66104 1.04643 1.31375 1.17906 0.90903 0.90850 0.91185 0.81385 0.85271 0.95658 0.95794 0.89457 0.93136 0.87717 0.88450 0.88849 0.89352 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.31 36.00 0.37 -0.45 16 2 C 0.07 1.01 6.74 -84.22 -0.57 0.44 16 3 C -0.29 -3.88 11.13 29.12 0.32 -3.56 16 4 S 0.13 1.96 22.96 -107.50 -2.47 -0.51 16 5 C 0.10 1.77 5.97 -13.46 -0.08 1.69 16 6 C 0.19 3.39 2.72 -68.86 -0.19 3.20 16 7 H 0.10 2.08 7.19 -51.93 -0.37 1.70 16 8 N -0.67 -13.84 5.83 -102.16 -0.60 -14.43 16 9 C 0.22 5.29 2.57 -68.87 -0.18 5.11 16 10 H 0.04 0.95 7.43 -51.93 -0.39 0.56 16 11 C -0.18 -4.01 8.70 37.16 0.32 -3.69 16 12 C -0.50 -13.54 8.84 -34.44 -0.30 -13.84 16 13 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 15 N -0.90 -25.31 11.32 55.43 0.63 -24.68 16 16 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.17 -2.65 3.80 -90.62 -0.34 -2.99 16 21 C -0.16 -2.33 8.37 -26.70 -0.22 -2.56 16 22 C -0.18 -2.48 9.87 -26.69 -0.26 -2.74 16 23 N -0.49 -8.42 10.53 -8.06 -0.08 -8.51 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.17 1.73 8.06 -52.49 -0.42 1.30 16 28 H 0.33 6.38 8.08 -39.29 -0.32 6.06 16 29 H 0.02 0.55 8.13 -51.93 -0.42 0.13 16 30 H 0.02 0.47 4.70 -51.92 -0.24 0.22 16 31 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.10 1.57 7.93 -51.93 -0.41 1.16 16 34 H 0.10 1.51 8.05 -51.93 -0.42 1.09 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -28.92 316.40 -9.39 -38.31 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.39 Total: 6.53 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: -1.22 Total: -17.93 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: -0.05 Total: -47.62 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.47 Total: -0.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.92 -9.39 -38.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381411869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.939 kcal (2) G-P(sol) polarization free energy of solvation -28.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds