Wall clock time and date at job start Mon Mar 30 2020 06:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33647 * 122.75096 * 2 1 4 4 S 1.76200 * 107.92251 * 180.02562 * 3 2 1 5 5 C 1.70972 * 90.28404 * 359.97438 * 4 3 2 6 6 C 1.50702 * 124.91369 * 179.97438 * 5 4 3 7 7 H 1.09003 * 109.47294 * 195.02365 * 6 5 4 8 8 N 1.46905 * 109.47206 * 315.02646 * 6 5 4 9 9 C 1.46901 * 110.99870 * 205.00135 * 8 6 5 10 10 H 1.09000 * 109.47473 * 34.99539 * 9 8 6 11 11 C 1.53003 * 109.47021 * 274.99736 * 9 8 6 12 12 C 1.50693 * 109.47182 * 155.00014 * 9 8 6 13 13 H 1.08005 * 119.99854 * 359.97438 * 12 9 8 14 14 C 1.37878 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31511 * 119.99935 * 0.02562 * 14 12 9 16 16 Si 1.86802 * 119.99899 * 180.02562 * 14 12 9 17 17 H 1.48508 * 109.47177 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47276 * 120.00245 * 16 14 12 19 19 H 1.48507 * 109.47088 * 240.00288 * 16 14 12 20 20 C 1.53002 * 109.47093 * 75.02656 * 6 5 4 21 21 C 1.52995 * 117.49760 * 128.74656 * 20 6 5 22 22 C 1.53002 * 117.49831 * 60.08592 * 20 6 5 23 23 N 1.29025 * 110.16993 * 0.24586 * 5 4 3 24 24 H 1.09005 * 109.46672 * 89.97572 * 1 2 3 25 25 H 1.08995 * 109.46973 * 209.97675 * 1 2 3 26 26 H 1.08998 * 109.46827 * 329.97731 * 1 2 3 27 27 H 1.07998 * 126.03185 * 359.96329 * 3 2 1 28 28 H 1.00901 * 110.99869 * 81.04847 * 8 6 5 29 29 H 1.08996 * 109.47234 * 300.00507 * 11 9 8 30 30 H 1.09007 * 109.47106 * 60.00477 * 11 9 8 31 31 H 1.08993 * 109.47190 * 180.02562 * 11 9 8 32 32 H 0.97003 * 119.99872 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.54748 * 274.41800 * 20 6 5 34 34 H 1.08995 * 117.50192 * 359.97438 * 21 20 6 35 35 H 1.09006 * 117.49879 * 145.02323 * 21 20 6 36 36 H 1.09000 * 117.49262 * 214.98071 * 22 20 6 37 37 H 1.08995 * 117.49590 * 359.97438 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0002 6 6 4.4835 -2.1271 -0.0010 7 1 3.9652 -3.0484 -0.2669 8 7 5.5455 -1.8624 -0.9810 9 6 6.1536 -3.1149 -1.4494 10 1 5.3906 -3.8915 -1.5030 11 6 7.2512 -3.5450 -0.4741 12 6 6.7513 -2.9027 -2.8164 13 1 6.6856 -1.9342 -3.2900 14 6 7.3820 -3.9447 -3.4624 15 7 7.4615 -5.1240 -2.8859 16 14 8.1235 -3.6813 -5.1566 17 1 7.9008 -2.2758 -5.5814 18 1 9.5814 -3.9590 -5.1075 19 1 7.4771 -4.5999 -6.1281 20 6 5.0995 -2.2723 1.3919 21 6 5.0718 -3.6601 2.0354 22 6 4.1504 -2.5551 2.5581 23 7 2.2199 -1.1083 -0.0048 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 1.8391 2.1308 -0.0006 28 1 6.2437 -1.2423 -0.5988 29 1 8.0142 -2.7684 -0.4204 30 1 6.8189 -3.6986 0.5147 31 1 7.7027 -4.4740 -0.8219 32 1 7.9049 -5.8572 -3.3406 33 1 5.9669 -1.6427 1.5903 34 1 4.6144 -4.4695 1.4666 35 1 5.9209 -3.9434 2.6576 36 1 4.3936 -2.1119 3.5238 37 1 3.0871 -2.6374 2.3330 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381411869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:03 Heat of formation + Delta-G solvation = 48.789707 kcal Electronic energy + Delta-G solvation = -18157.044515 eV Core-core repulsion = 15447.094954 eV Total energy + Delta-G solvation = -2709.949561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.90426 -39.34477 -36.70330 -34.50813 -33.01544 -30.73530 -28.45369 -27.25602 -26.99299 -24.08945 -23.24492 -22.36636 -21.54163 -20.39956 -18.76390 -18.12394 -17.07856 -16.82559 -16.30892 -15.83002 -15.38035 -15.03692 -14.94780 -14.29087 -14.15409 -13.77090 -13.42935 -13.37574 -13.26908 -12.91190 -12.79895 -12.57342 -12.42575 -12.39450 -12.10034 -12.07219 -11.95440 -11.40988 -11.22030 -10.86771 -10.46864 -10.44700 -10.25187 -9.51145 -9.12024 -8.08391 -6.19148 -0.13458 0.56878 0.97727 1.41579 1.43787 1.55556 1.89322 2.43963 2.72322 3.07253 3.20276 3.73780 3.78915 3.95447 4.07070 4.18604 4.34674 4.39494 4.45700 4.60340 4.73868 4.80859 4.83551 4.90275 4.96033 5.00384 5.06518 5.15114 5.19967 5.22600 5.41701 5.46228 5.71899 5.85265 6.27778 6.58079 6.72428 6.91920 6.94034 7.50129 8.96867 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020760 B = 0.005745 C = 0.004980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.409447 B = 4872.904840 C = 5620.596264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.044 3.956 3 C -0.274 4.274 4 S 0.153 5.847 5 C 0.070 3.930 6 C 0.195 3.805 7 H 0.069 0.931 8 N -0.676 5.676 9 C 0.227 3.773 10 H -0.002 1.002 11 C -0.160 4.160 12 C -0.516 4.516 13 H 0.053 0.947 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.958 3.042 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.284 1.284 20 C -0.181 4.181 21 C -0.166 4.166 22 C -0.157 4.157 23 N -0.509 5.509 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.205 0.795 28 H 0.337 0.663 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 11.194 10.666 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 C -0.413 4.413 4 S 0.408 5.592 5 C -0.208 4.208 6 C 0.081 3.919 7 H 0.087 0.913 8 N -0.305 5.305 9 C 0.119 3.881 10 H 0.016 0.984 11 C -0.220 4.220 12 C -0.554 4.554 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.560 5.560 16 Si 0.784 3.216 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.210 1.210 20 C -0.202 4.202 21 C -0.203 4.203 22 C -0.195 4.195 23 N -0.225 5.225 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.222 0.778 28 H 0.156 0.844 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.350 11.094 10.051 17.141 hybrid contribution 0.129 -0.697 -0.427 0.827 sum -8.221 10.397 9.624 16.380 Atomic orbital electron populations 1.20410 0.85289 1.04097 1.03389 1.20790 0.99577 0.86415 1.01991 1.27179 0.94956 1.04829 1.14363 1.83724 1.07534 1.01500 1.66434 1.26874 0.93554 0.98963 1.01383 1.19454 0.90183 0.92321 0.89950 0.91251 1.60669 1.15138 1.17150 1.37585 1.18888 0.91086 0.85145 0.92990 0.98423 1.22360 0.99680 1.01852 0.98075 1.21470 1.34872 0.96806 1.02280 0.92884 1.25656 0.96771 0.94948 1.01353 1.70018 1.44850 1.02024 1.39071 0.85514 0.78014 0.78082 0.80018 1.19450 1.20413 1.21029 1.23041 1.02313 1.01677 0.93184 1.22984 1.02707 0.91348 1.03271 1.22957 0.96421 1.02369 0.97734 1.66108 1.05039 1.33354 1.18033 0.90394 0.91292 0.88186 0.77815 0.84395 0.95225 0.93135 0.92454 0.93065 0.86680 0.90153 0.87191 0.86762 0.89733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.42 10.31 71.23 0.73 -0.68 16 2 C 0.04 1.22 6.74 41.52 0.28 1.50 16 3 C -0.27 -6.57 11.13 66.78 0.74 -5.83 16 4 S 0.15 4.25 22.96 -56.49 -1.30 2.95 16 5 C 0.07 2.41 5.97 88.52 0.53 2.94 16 6 C 0.20 7.22 2.72 44.17 0.12 7.34 16 7 H 0.07 2.99 7.19 -2.39 -0.02 2.97 16 8 N -0.68 -28.39 5.83 -477.14 -2.78 -31.17 16 9 C 0.23 11.39 2.57 44.17 0.11 11.50 16 10 H 0.00 -0.12 7.43 -2.39 -0.02 -0.14 16 11 C -0.16 -7.43 8.70 71.98 0.63 -6.81 16 12 C -0.52 -28.74 8.84 25.60 0.23 -28.52 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 14 C 0.01 0.61 5.30 84.66 0.45 1.06 16 15 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 16 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 20 C -0.18 -5.50 3.80 -10.79 -0.04 -5.54 16 21 C -0.17 -4.77 8.37 30.62 0.26 -4.51 16 22 C -0.16 -4.09 9.87 30.62 0.30 -3.79 16 23 N -0.51 -17.56 10.53 -179.40 -1.89 -19.45 16 24 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 26 H 0.10 1.32 8.12 -2.39 -0.02 1.30 16 27 H 0.20 3.28 8.06 -2.91 -0.02 3.25 16 28 H 0.34 13.06 8.08 -89.69 -0.72 12.33 16 29 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 30 H 0.05 2.01 4.70 -2.38 -0.01 2.00 16 31 H 0.06 3.02 6.07 -2.39 -0.01 3.01 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.12 3.27 7.93 -2.39 -0.02 3.25 16 34 H 0.08 2.58 8.05 -2.39 -0.02 2.56 16 35 H 0.11 2.79 8.14 -2.38 -0.02 2.77 16 36 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -63.44 316.40 0.99 -62.46 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.35 Total: 22.92 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 4.34 Total: -31.33 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -4.43 Total: -103.41 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.95 kcal Total: -63.44 0.99 -62.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381411869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.248 kcal (2) G-P(sol) polarization free energy of solvation -63.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds