Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81404 * 102.99767 * 2 1 4 4 H 1.09003 * 109.47013 * 55.00021 * 3 2 1 5 5 C 1.52995 * 109.47157 * 295.00255 * 3 2 1 6 6 C 1.52998 * 109.47024 * 175.00312 * 3 2 1 7 7 C 1.52999 * 109.46969 * 295.00187 * 6 3 2 8 8 N 1.46505 * 109.47085 * 180.02562 * 7 6 3 9 9 C 1.32217 * 119.99610 * 119.23373 * 8 7 6 10 10 C 1.46911 * 120.83703 * 5.96925 * 9 8 7 11 11 C 1.34379 * 119.37079 * 180.02562 * 10 9 8 12 12 N 1.36427 * 121.21459 * 359.97438 * 11 10 9 13 13 H 0.97001 * 119.08485 * 180.02562 * 12 11 10 14 14 C 1.37764 * 121.82744 * 0.02562 * 12 11 10 15 15 C 1.40176 * 119.74505 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99790 * 202.60572 * 15 14 12 17 17 C 1.40346 * 120.00195 * 22.60238 * 15 14 12 18 18 N 1.30587 * 119.99768 * 17.08038 * 17 15 14 19 19 Si 1.86804 * 120.00147 * 197.07578 * 17 15 14 20 20 H 1.48503 * 109.46870 * 90.00265 * 19 17 15 21 21 H 1.48501 * 109.47008 * 210.00351 * 19 17 15 22 22 H 1.48505 * 109.47032 * 330.00215 * 19 17 15 23 23 C 1.39063 * 120.50975 * 359.66980 * 14 12 11 24 24 H 1.09000 * 109.47442 * 59.99638 * 1 2 3 25 25 H 1.09000 * 109.46599 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46981 * 299.99498 * 1 2 3 27 27 H 1.09000 * 109.47330 * 179.97438 * 5 3 2 28 28 H 1.08994 * 109.47497 * 299.99915 * 5 3 2 29 29 H 1.08998 * 109.47294 * 60.00326 * 5 3 2 30 30 H 1.09000 * 109.46983 * 55.00049 * 6 3 2 31 31 H 1.09004 * 109.47050 * 175.00152 * 6 3 2 32 32 H 1.09000 * 109.47155 * 299.99757 * 7 6 3 33 33 H 1.08995 * 109.47246 * 59.99902 * 7 6 3 34 34 H 1.08002 * 120.31796 * 0.02562 * 10 9 8 35 35 H 1.07990 * 119.39120 * 180.02562 * 11 10 9 36 36 H 0.97003 * 119.99542 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.63105 * 180.32861 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3073 6 6 3.7369 1.9413 0.1256 7 6 4.1989 1.4192 1.4876 8 7 5.6494 1.5860 1.6082 9 6 6.1499 2.3441 2.5688 10 6 5.2804 2.9219 3.6024 11 6 5.8203 3.6886 4.5649 12 7 7.1609 3.9397 4.6000 13 1 7.5178 4.4971 5.3091 14 6 8.0216 3.4235 3.6563 15 6 9.3916 3.7100 3.7339 16 1 10.0091 3.6384 2.8507 17 6 9.9608 4.0899 4.9592 18 7 9.3214 3.8619 6.0748 19 14 11.6330 4.9218 4.9943 20 1 11.4558 6.3934 4.9039 21 1 12.3274 4.5838 6.2627 22 1 12.4452 4.4493 3.8443 23 6 7.5428 2.6152 2.6310 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9874 3.4638 -1.3071 28 1 2.2352 1.9151 -2.1491 29 1 0.6635 2.2779 -1.3968 30 1 4.2338 1.3805 -0.6660 31 1 3.9901 2.9977 0.0366 32 1 3.7020 1.9799 2.2793 33 1 3.9457 0.3628 1.5767 34 1 4.2172 2.7323 3.5889 35 1 5.1815 4.1132 5.3251 36 1 9.7150 4.1242 6.9217 37 1 8.2166 2.2051 1.8933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381422534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = 20.277563 kcal Electronic energy + Delta-G solvation = -17223.360597 eV Core-core repulsion = 14512.174657 eV Total energy + Delta-G solvation = -2711.185940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.53878 -35.93235 -34.29147 -33.22186 -30.65644 -29.99628 -28.74506 -27.26985 -25.93507 -23.02591 -21.61122 -21.03086 -19.83851 -17.98100 -16.60387 -16.35674 -15.45824 -15.04644 -14.84206 -14.46179 -14.12400 -13.75432 -13.63227 -13.13586 -12.88958 -12.74209 -12.64857 -12.40341 -11.91294 -11.58440 -11.47116 -11.32510 -11.11465 -10.99896 -10.79510 -10.57820 -10.40772 -10.07061 -9.70103 -9.66409 -9.25233 -8.22060 -7.54012 -7.46458 -7.27050 -5.93416 -4.74834 1.79481 2.60277 2.69508 2.77927 2.88983 2.93925 3.18095 3.65751 4.29196 4.64410 4.86473 5.01046 5.07333 5.10450 5.31007 5.40916 5.56327 5.61194 5.69960 5.73430 5.91548 6.04853 6.17302 6.27893 6.47664 6.53212 6.71792 6.79373 6.82235 6.93226 7.00265 7.43099 7.70075 7.78821 8.01124 8.29238 8.32086 8.83188 8.95706 9.72244 9.79998 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049805 B = 0.003290 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.060574 B = 8507.829704 C = 8677.354830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.252 6.252 3 C -0.052 4.052 4 H 0.081 0.919 5 C -0.145 4.145 6 C -0.089 4.089 7 C 0.061 3.939 8 N -0.671 5.671 9 C 0.282 3.718 10 C -0.303 4.303 11 C 0.125 3.875 12 N -0.603 5.603 13 H 0.413 0.587 14 C 0.330 3.670 15 C -0.467 4.467 16 H 0.103 0.897 17 C 0.076 3.924 18 N -0.814 5.814 19 Si 0.924 3.076 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.256 1.256 23 C -0.358 4.358 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.054 0.946 34 H 0.116 0.884 35 H 0.130 0.870 36 H 0.292 0.708 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.185 2.175 -3.024 10.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.027 6.027 3 C -0.181 4.181 4 H 0.099 0.901 5 C -0.204 4.204 6 C -0.128 4.128 7 C -0.071 4.071 8 N -0.397 5.397 9 C 0.118 3.882 10 C -0.333 4.333 11 C -0.005 4.005 12 N -0.214 5.214 13 H 0.253 0.747 14 C 0.221 3.779 15 C -0.500 4.500 16 H 0.121 0.879 17 C -0.142 4.142 18 N -0.442 5.442 19 Si 0.748 3.252 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.180 1.180 23 C -0.387 4.387 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.103 0.897 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.363 0.711 -3.560 10.043 hybrid contribution -0.822 1.904 1.198 2.395 sum -10.186 2.615 -2.362 10.778 Atomic orbital electron populations 1.23390 0.96039 1.05920 1.04397 1.87133 1.05282 1.12433 1.97806 1.23261 1.01625 0.92738 1.00503 0.90051 1.22075 1.00501 1.01050 0.96806 1.21460 0.89220 1.01545 1.00573 1.21784 0.92863 0.98833 0.93593 1.73328 1.08334 1.29495 1.28497 1.20248 0.93010 0.86930 0.87974 1.22302 0.99740 1.09662 1.01567 1.21230 0.85171 0.96592 0.97473 1.42069 1.04353 1.46020 1.28946 0.74682 1.17620 0.89150 0.86568 0.84532 1.19525 0.92603 1.41451 0.96405 0.87898 1.26198 1.00991 0.92382 0.94606 1.69341 1.40332 1.35185 0.99369 0.86015 0.80194 0.79863 0.79151 1.18967 1.20026 1.17984 1.20211 0.92945 1.16880 1.08693 0.90926 0.88552 0.90899 0.91749 0.91392 0.93056 0.91190 0.91448 0.95848 0.92836 0.86583 0.85285 0.89698 0.86944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 10.45 101.05 1.06 -0.24 16 2 S -0.25 -3.63 20.60 -107.50 -2.21 -5.84 16 3 C -0.05 -0.73 2.82 -26.73 -0.08 -0.81 16 4 H 0.08 1.11 8.14 -51.92 -0.42 0.69 16 5 C -0.15 -1.67 9.10 37.15 0.34 -1.33 16 6 C -0.09 -1.57 5.00 -26.73 -0.13 -1.70 16 7 C 0.06 1.27 6.09 -4.04 -0.02 1.25 16 8 N -0.67 -16.85 10.62 -57.24 -0.61 -17.46 16 9 C 0.28 7.11 6.80 -82.74 -0.56 6.54 16 10 C -0.30 -6.63 9.38 -37.44 -0.35 -6.98 16 11 C 0.13 2.50 11.15 -16.87 -0.19 2.31 16 12 N -0.60 -13.32 4.89 -10.84 -0.05 -13.37 16 13 H 0.41 8.68 6.33 -40.82 -0.26 8.42 16 14 C 0.33 8.16 6.37 -84.17 -0.54 7.63 16 15 C -0.47 -11.16 9.03 -38.06 -0.34 -11.50 16 16 H 0.10 2.40 7.91 -52.48 -0.42 1.99 16 17 C 0.08 1.67 5.18 -17.29 -0.09 1.58 16 18 N -0.81 -17.90 11.11 55.57 0.62 -17.28 16 19 Si 0.92 16.47 29.59 -169.99 -5.03 11.44 16 20 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 21 H -0.28 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 23 C -0.36 -9.33 9.83 -37.82 -0.37 -9.70 16 24 H 0.07 0.64 7.14 -51.92 -0.37 0.27 16 25 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.51 6.92 -51.93 -0.36 0.15 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.48 5.22 -51.93 -0.27 0.21 16 33 H 0.05 1.15 7.13 -51.93 -0.37 0.78 16 34 H 0.12 2.33 5.90 -52.49 -0.31 2.02 16 35 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16 37 H 0.11 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 317.30 15.07 4.78 4.78 Total: -1.00 -27.39 317.30 -9.08 -36.47 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.29 Total: 14.23 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.28 Total: -12.96 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.04 Total: -48.11 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -2.21 Total: -5.84 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.39 -9.08 -36.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381422534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.752 kcal (2) G-P(sol) polarization free energy of solvation -27.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds