Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81404 * 102.99767 * 2 1 4 4 H 1.09003 * 109.47013 * 55.00021 * 3 2 1 5 5 C 1.52995 * 109.47157 * 295.00255 * 3 2 1 6 6 C 1.52998 * 109.47024 * 175.00312 * 3 2 1 7 7 C 1.52999 * 109.46969 * 295.00187 * 6 3 2 8 8 N 1.46505 * 109.47085 * 180.02562 * 7 6 3 9 9 C 1.32217 * 119.99610 * 119.23373 * 8 7 6 10 10 C 1.46911 * 120.83703 * 5.96925 * 9 8 7 11 11 C 1.34379 * 119.37079 * 180.02562 * 10 9 8 12 12 N 1.36427 * 121.21459 * 359.97438 * 11 10 9 13 13 H 0.97001 * 119.08485 * 180.02562 * 12 11 10 14 14 C 1.37764 * 121.82744 * 0.02562 * 12 11 10 15 15 C 1.40176 * 119.74505 * 179.97438 * 14 12 11 16 16 H 1.08005 * 119.99790 * 202.60572 * 15 14 12 17 17 C 1.40346 * 120.00195 * 22.60238 * 15 14 12 18 18 N 1.30587 * 119.99768 * 17.08038 * 17 15 14 19 19 Si 1.86804 * 120.00147 * 197.07578 * 17 15 14 20 20 H 1.48503 * 109.46870 * 90.00265 * 19 17 15 21 21 H 1.48501 * 109.47008 * 210.00351 * 19 17 15 22 22 H 1.48505 * 109.47032 * 330.00215 * 19 17 15 23 23 C 1.39063 * 120.50975 * 359.66980 * 14 12 11 24 24 H 1.09000 * 109.47442 * 59.99638 * 1 2 3 25 25 H 1.09000 * 109.46599 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46981 * 299.99498 * 1 2 3 27 27 H 1.09000 * 109.47330 * 179.97438 * 5 3 2 28 28 H 1.08994 * 109.47497 * 299.99915 * 5 3 2 29 29 H 1.08998 * 109.47294 * 60.00326 * 5 3 2 30 30 H 1.09000 * 109.46983 * 55.00049 * 6 3 2 31 31 H 1.09004 * 109.47050 * 175.00152 * 6 3 2 32 32 H 1.09000 * 109.47155 * 299.99757 * 7 6 3 33 33 H 1.08995 * 109.47246 * 59.99902 * 7 6 3 34 34 H 1.08002 * 120.31796 * 0.02562 * 10 9 8 35 35 H 1.07990 * 119.39120 * 180.02562 * 11 10 9 36 36 H 0.97003 * 119.99542 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.63105 * 180.32861 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 0.8418 5 6 1.7427 2.4016 -1.3073 6 6 3.7369 1.9413 0.1256 7 6 4.1989 1.4192 1.4876 8 7 5.6494 1.5860 1.6082 9 6 6.1499 2.3441 2.5688 10 6 5.2804 2.9219 3.6024 11 6 5.8203 3.6886 4.5649 12 7 7.1609 3.9397 4.6000 13 1 7.5178 4.4971 5.3091 14 6 8.0216 3.4235 3.6563 15 6 9.3916 3.7100 3.7339 16 1 10.0091 3.6384 2.8507 17 6 9.9608 4.0899 4.9592 18 7 9.3214 3.8619 6.0748 19 14 11.6330 4.9218 4.9943 20 1 11.4558 6.3934 4.9039 21 1 12.3274 4.5838 6.2627 22 1 12.4452 4.4493 3.8443 23 6 7.5428 2.6152 2.6310 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.9874 3.4638 -1.3071 28 1 2.2352 1.9151 -2.1491 29 1 0.6635 2.2779 -1.3968 30 1 4.2338 1.3805 -0.6660 31 1 3.9901 2.9977 0.0366 32 1 3.7020 1.9799 2.2793 33 1 3.9457 0.3628 1.5767 34 1 4.2172 2.7323 3.5889 35 1 5.1815 4.1132 5.3251 36 1 9.7150 4.1242 6.9217 37 1 8.2166 2.2051 1.8933 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381422534.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = 4.422626 kcal Electronic energy + Delta-G solvation = -17224.048118 eV Core-core repulsion = 14512.174657 eV Total energy + Delta-G solvation = -2711.873462 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.30478 -37.45917 -35.90518 -34.85105 -32.42729 -31.45490 -29.75938 -28.79689 -27.63378 -24.49683 -23.27113 -22.43768 -21.56834 -19.75650 -18.38504 -17.55511 -17.11558 -16.60369 -16.23181 -16.03313 -15.40251 -15.10695 -14.76066 -14.55343 -14.42513 -14.06857 -13.79833 -13.61451 -13.43589 -13.16970 -12.86719 -12.67581 -12.58630 -12.50564 -12.35275 -12.05778 -11.92664 -11.67107 -11.33113 -11.13400 -10.65882 -9.99881 -9.27324 -8.98005 -8.66343 -7.74275 -6.64499 0.76555 0.94803 1.08418 1.42349 1.55895 1.61579 1.72505 2.16550 2.55266 2.92577 3.47284 3.70135 3.92603 4.11598 4.17643 4.28822 4.34156 4.37640 4.56890 4.63603 4.69294 4.78009 4.85527 4.90731 4.93426 4.98066 5.05025 5.14635 5.20367 5.27467 5.37275 5.65134 5.82994 5.99485 6.10437 6.47225 6.51168 7.00758 7.20181 7.98619 8.03824 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.049805 B = 0.003290 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.060574 B = 8507.829704 C = 8677.354830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.319 6.319 3 C -0.038 4.038 4 H 0.089 0.911 5 C -0.139 4.139 6 C -0.079 4.079 7 C 0.065 3.935 8 N -0.711 5.711 9 C 0.263 3.737 10 C -0.322 4.322 11 C 0.140 3.860 12 N -0.602 5.602 13 H 0.418 0.582 14 C 0.322 3.678 15 C -0.495 4.495 16 H 0.095 0.905 17 C 0.050 3.950 18 N -0.822 5.822 19 Si 0.997 3.003 20 H -0.253 1.253 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.404 4.404 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.135 0.865 35 H 0.185 0.815 36 H 0.307 0.693 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 3.827 -1.547 12.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.094 6.094 3 C -0.167 4.167 4 H 0.108 0.892 5 C -0.198 4.198 6 C -0.118 4.118 7 C -0.066 4.066 8 N -0.438 5.438 9 C 0.100 3.900 10 C -0.352 4.352 11 C 0.011 3.989 12 N -0.214 5.214 13 H 0.260 0.740 14 C 0.213 3.787 15 C -0.526 4.526 16 H 0.113 0.887 17 C -0.168 4.168 18 N -0.449 5.449 19 Si 0.816 3.184 20 H -0.177 1.177 21 H -0.188 1.188 22 H -0.188 1.188 23 C -0.434 4.434 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.152 0.848 35 H 0.202 0.798 36 H 0.119 0.881 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.554 2.358 -2.073 11.011 hybrid contribution -0.434 1.351 0.826 1.642 sum -10.988 3.710 -1.247 11.664 Atomic orbital electron populations 1.23433 0.91265 1.07280 1.05780 1.87373 1.10560 1.13464 1.98015 1.23108 0.98661 0.92496 1.02402 0.89247 1.22033 1.01840 1.01096 0.94854 1.21279 0.92065 1.00445 0.97973 1.21779 0.90859 0.98378 0.95569 1.73225 1.11078 1.30139 1.29325 1.20444 0.93183 0.87382 0.88984 1.22361 1.00244 1.10913 1.01634 1.21929 0.84631 0.94806 0.97572 1.42092 1.05018 1.45846 1.28470 0.74023 1.17715 0.90115 0.86200 0.84720 1.19734 0.92659 1.42800 0.97454 0.88709 1.26941 1.04541 0.91918 0.93433 1.69316 1.41720 1.33748 1.00142 0.84951 0.75260 0.79078 0.79081 1.17700 1.18831 1.18791 1.20148 0.93572 1.19661 1.09980 0.89138 0.87214 0.89830 0.90915 0.91960 0.90680 0.93043 0.92088 0.95253 0.93930 0.84784 0.79762 0.88143 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.45 113.37 1.19 -0.73 16 2 S -0.32 -9.05 20.60 -56.49 -1.16 -10.21 16 3 C -0.04 -1.03 2.82 30.59 0.09 -0.95 16 4 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 5 C -0.14 -2.96 9.10 71.98 0.66 -2.31 16 6 C -0.08 -2.86 5.00 30.59 0.15 -2.71 16 7 C 0.07 2.82 6.09 86.38 0.53 3.35 16 8 N -0.71 -37.64 10.62 -335.00 -3.56 -41.20 16 9 C 0.26 13.86 6.80 42.30 0.29 14.14 16 10 C -0.32 -14.04 9.38 23.66 0.22 -13.82 16 11 C 0.14 5.34 11.15 83.10 0.93 6.27 16 12 N -0.60 -26.21 4.89 -188.20 -0.92 -27.13 16 13 H 0.42 16.93 6.33 -92.71 -0.59 16.34 16 14 C 0.32 16.37 6.37 38.88 0.25 16.62 16 15 C -0.49 -24.12 9.03 23.25 0.21 -23.91 16 16 H 0.09 4.63 7.91 -2.91 -0.02 4.61 16 17 C 0.05 2.11 5.18 85.39 0.44 2.55 16 18 N -0.82 -34.68 11.11 21.89 0.24 -34.43 16 19 Si 1.00 32.34 29.59 68.60 2.03 34.37 16 20 H -0.25 -7.76 7.11 99.48 0.71 -7.05 16 21 H -0.26 -8.10 7.11 99.48 0.71 -7.39 16 22 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 23 C -0.40 -22.38 9.83 23.41 0.23 -22.15 16 24 H 0.09 1.29 7.14 -2.39 -0.02 1.27 16 25 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.25 6.92 -2.39 -0.02 1.23 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.03 1.21 5.22 -2.39 -0.01 1.20 16 33 H 0.04 1.92 7.13 -2.39 -0.02 1.90 16 34 H 0.13 5.24 5.90 -2.91 -0.02 5.23 16 35 H 0.19 4.93 8.06 -2.92 -0.02 4.91 16 36 H 0.31 11.31 8.29 -92.71 -0.77 10.54 16 37 H 0.08 4.92 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -62.73 317.30 2.28 -60.44 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: 0.48 Total: 41.78 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 5.17 Total: -23.63 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -4.23 Total: -102.76 kcal Atomic # 14 Polarization: 32.34 SS G_CDS: 2.03 Total: 34.37 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.16 Total: -10.21 kcal Total: -62.73 2.28 -60.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381422534.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.868 kcal (2) G-P(sol) polarization free energy of solvation -62.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds