Wall clock time and date at job start Mon Mar 30 2020 07:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46724 * 2 1 4 4 C 1.52997 * 109.47414 * 120.00306 * 2 1 3 5 5 C 1.50699 * 109.47011 * 184.99940 * 4 2 1 6 6 H 1.08002 * 120.00034 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99543 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99199 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00291 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46950 * 90.00008 * 9 7 5 11 11 H 1.48492 * 109.47074 * 209.99547 * 9 7 5 12 12 H 1.48498 * 109.47093 * 330.00303 * 9 7 5 13 13 N 1.46906 * 109.46812 * 240.00492 * 2 1 3 14 14 C 1.46896 * 111.00024 * 83.82044 * 13 2 1 15 15 H 1.08996 * 109.47185 * 325.28790 * 14 13 2 16 16 C 1.50699 * 109.46919 * 85.28744 * 14 13 2 17 17 N 1.29027 * 124.91697 * 44.69647 * 16 14 13 18 18 C 1.31782 * 117.12525 * 179.81014 * 17 16 14 19 19 C 1.33644 * 114.49962 * 0.47470 * 18 17 16 20 20 S 1.70982 * 124.91691 * 224.99560 * 16 14 13 21 21 C 1.52999 * 109.47069 * 205.28486 * 14 13 2 22 22 C 1.52999 * 117.50212 * 243.90355 * 21 14 13 23 23 C 1.52996 * 60.00142 * 252.51181 * 22 21 14 24 24 H 1.09006 * 109.46684 * 175.19218 * 1 2 3 25 25 H 1.09000 * 109.46989 * 295.18495 * 1 2 3 26 26 H 1.09000 * 109.47242 * 55.18935 * 1 2 3 27 27 H 1.09000 * 109.47182 * 305.00415 * 4 2 1 28 28 H 1.08997 * 109.46827 * 65.00052 * 4 2 1 29 29 H 0.97004 * 119.99264 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00004 * 319.86797 * 13 2 1 31 31 H 1.08002 * 122.75228 * 180.22884 * 18 17 16 32 32 H 1.08004 * 126.03362 * 179.71783 * 19 18 17 33 33 H 1.09003 * 115.54817 * 29.61644 * 21 14 13 34 34 H 1.08998 * 117.49955 * 0.02562 * 22 21 14 35 35 H 1.09000 * 117.50071 * 145.01997 * 22 21 14 36 36 H 1.08995 * 117.50148 * 252.50673 * 23 22 21 37 37 H 1.09002 * 117.51846 * 107.48261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3125 6 1 4.0790 -0.0854 0.5394 7 6 4.2305 -1.1927 2.3582 8 7 5.5413 -1.1003 2.4131 9 14 3.3017 -2.1079 3.6957 10 1 3.1711 -3.5381 3.3177 11 1 4.0450 -2.0004 4.9767 12 1 1.9505 -1.5129 3.8558 13 7 2.0197 -0.6924 -1.1996 14 6 2.0560 0.2157 -2.3537 15 1 1.2229 0.9157 -2.2915 16 6 3.3551 0.9794 -2.3512 17 7 4.5163 0.4607 -2.1337 18 6 5.5537 1.2725 -2.1719 19 6 5.2497 2.5487 -2.4266 20 16 3.5029 2.6599 -2.6292 21 6 1.9443 -0.5966 -3.6454 22 6 3.1376 -0.5693 -4.6026 23 6 1.8519 0.1783 -4.9614 24 1 -0.3633 -1.0241 -0.0861 25 1 -0.3633 0.4373 0.9300 26 1 -0.3634 0.5867 -0.8438 27 1 1.6055 -0.2619 2.1369 28 1 1.7518 -1.7715 1.2054 29 1 6.0256 -1.5064 3.1490 30 1 1.4612 -1.5087 -1.3992 31 1 6.5662 0.9348 -2.0068 32 1 5.9508 3.3673 -2.4954 33 1 1.3815 -1.5269 -3.5686 34 1 4.0025 0.0270 -4.3118 35 1 3.3603 -1.4818 -5.1555 36 1 1.2286 -0.2423 -5.7505 37 1 1.8703 1.2668 -4.9069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381453082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:58 Heat of formation + Delta-G solvation = 79.921604 kcal Electronic energy + Delta-G solvation = -18546.260042 eV Core-core repulsion = 15837.660462 eV Total energy + Delta-G solvation = -2708.599580 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67366 -37.65117 -36.03735 -32.56585 -31.22166 -29.30973 -27.69781 -26.13500 -23.91716 -22.47008 -22.25109 -21.14566 -19.46056 -18.94598 -17.41450 -16.51389 -16.18013 -15.20487 -14.76314 -14.70700 -14.16113 -13.65572 -13.42040 -13.24582 -12.87609 -12.54365 -12.31732 -12.06726 -11.66851 -11.54905 -11.41058 -11.16119 -11.14197 -10.71847 -10.32023 -10.07159 -10.02386 -9.74332 -9.51759 -8.99950 -8.97356 -8.82266 -8.47631 -8.31032 -7.66184 -5.78679 -3.71128 1.14998 1.74910 2.12340 3.42298 3.42611 3.49233 3.51236 3.83303 4.46402 4.63862 4.69503 4.88308 4.99353 5.20177 5.43750 5.49581 5.53808 5.59589 5.61814 5.68032 5.68530 5.80695 5.88415 5.93821 6.02197 6.15723 6.27552 6.33482 6.47616 6.63401 6.82300 7.21350 7.32831 7.76901 7.96432 8.09737 8.38558 8.85537 9.39801 9.84592 11.35537 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.007093 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.053043 B = 3946.549535 C = 4616.302089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.098 3.902 3 H 0.066 0.934 4 C -0.003 4.003 5 C -0.484 4.484 6 H 0.086 0.914 7 C 0.060 3.940 8 N -0.909 5.909 9 Si 0.871 3.129 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.270 1.270 13 N -0.639 5.639 14 C 0.195 3.805 15 H 0.058 0.942 16 C 0.085 3.915 17 N -0.416 5.416 18 C 0.051 3.949 19 C -0.266 4.266 20 S 0.058 5.942 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.184 4.184 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.015 0.985 28 H 0.011 0.989 29 H 0.256 0.744 30 H 0.339 0.661 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 5.863 -13.971 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.012 4.012 3 H 0.084 0.916 4 C -0.040 4.040 5 C -0.522 4.522 6 H 0.104 0.896 7 C -0.139 4.139 8 N -0.550 5.550 9 Si 0.699 3.301 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.195 1.195 13 N -0.270 5.270 14 C 0.081 3.919 15 H 0.076 0.924 16 C -0.196 4.196 17 N -0.128 5.128 18 C -0.100 4.100 19 C -0.404 4.404 20 S 0.311 5.689 21 C -0.164 4.164 22 C -0.200 4.200 23 C -0.222 4.222 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.033 0.967 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.160 0.840 31 H 0.189 0.811 32 H 0.188 0.812 33 H 0.131 0.869 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.403 6.133 -13.780 16.802 hybrid contribution -0.277 -0.712 0.975 1.238 sum -7.680 5.421 -12.805 15.886 Atomic orbital electron populations 1.22632 0.99302 1.01199 1.01228 1.21636 0.89652 0.98224 0.91638 0.91554 1.19594 0.98216 0.94998 0.91218 1.21147 0.89324 1.33388 1.08345 0.89597 1.24996 0.94633 0.96463 0.97786 1.69926 1.06324 1.46565 1.32139 0.86939 0.80322 0.80729 0.82095 1.20711 1.21876 1.19516 1.60200 1.58732 1.07154 1.00951 1.19470 0.88912 0.92867 0.90641 0.92432 1.27077 0.98161 0.92489 1.01826 1.66188 0.97345 1.36852 1.12419 1.21990 0.99504 0.88599 0.99881 1.26907 0.97066 1.02074 1.14382 1.83730 1.04699 1.12544 1.67934 1.22334 1.03894 1.00763 0.89416 1.23030 0.92486 1.02381 1.02128 1.23021 1.01840 0.99160 0.98155 0.92859 0.92273 0.93961 0.96701 0.97054 0.93371 0.84004 0.81055 0.81194 0.86855 0.88368 0.88986 0.88759 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 9.16 37.16 0.34 -2.49 16 2 C 0.10 1.91 2.35 -67.71 -0.16 1.75 16 3 H 0.07 1.40 7.66 -51.93 -0.40 1.00 16 4 C 0.00 -0.06 3.72 -27.88 -0.10 -0.17 16 5 C -0.48 -14.08 9.39 -34.44 -0.32 -14.40 16 6 H 0.09 2.73 7.99 -52.49 -0.42 2.31 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -29.08 13.96 55.43 0.77 -28.31 16 9 Si 0.87 22.54 27.47 -169.99 -4.67 17.87 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 12 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 13 N -0.64 -11.77 5.72 -100.95 -0.58 -12.35 16 14 C 0.20 3.06 2.70 -68.87 -0.19 2.88 16 15 H 0.06 0.84 7.07 -51.93 -0.37 0.47 16 16 C 0.09 1.47 4.09 -13.46 -0.06 1.41 16 17 N -0.42 -8.25 9.42 -11.86 -0.11 -8.36 16 18 C 0.05 0.91 11.35 -19.18 -0.22 0.69 16 19 C -0.27 -3.95 11.37 29.12 0.33 -3.62 16 20 S 0.06 0.85 23.18 -107.50 -2.49 -1.65 16 21 C -0.14 -1.90 5.85 -90.62 -0.53 -2.43 16 22 C -0.16 -2.17 9.61 -26.73 -0.26 -2.42 16 23 C -0.18 -2.04 10.11 -26.73 -0.27 -2.31 16 24 H 0.05 0.76 8.05 -51.93 -0.42 0.35 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.56 7.41 -51.93 -0.38 0.17 16 27 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 28 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.34 5.59 7.83 -39.29 -0.31 5.28 16 31 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 32 H 0.17 1.99 8.06 -52.48 -0.42 1.57 16 33 H 0.11 1.36 7.78 -51.93 -0.40 0.95 16 34 H 0.10 1.50 5.75 -51.93 -0.30 1.20 16 35 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -33.26 316.96 -9.30 -42.56 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.47 Total: 4.85 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -1.53 Total: -19.39 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.08 Total: -49.01 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -4.67 Total: 17.87 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.26 -9.30 -42.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381453082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.478 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds