Wall clock time and date at job start Mon Mar 30 2020 07:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46724 * 2 1 4 4 C 1.52997 * 109.47414 * 120.00306 * 2 1 3 5 5 C 1.50699 * 109.47011 * 184.99940 * 4 2 1 6 6 H 1.08002 * 120.00034 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99543 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99199 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00291 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46950 * 90.00008 * 9 7 5 11 11 H 1.48492 * 109.47074 * 209.99547 * 9 7 5 12 12 H 1.48498 * 109.47093 * 330.00303 * 9 7 5 13 13 N 1.46906 * 109.46812 * 240.00492 * 2 1 3 14 14 C 1.46896 * 111.00024 * 83.82044 * 13 2 1 15 15 H 1.08996 * 109.47185 * 325.28790 * 14 13 2 16 16 C 1.50699 * 109.46919 * 85.28744 * 14 13 2 17 17 N 1.29027 * 124.91697 * 44.69647 * 16 14 13 18 18 C 1.31782 * 117.12525 * 179.81014 * 17 16 14 19 19 C 1.33644 * 114.49962 * 0.47470 * 18 17 16 20 20 S 1.70982 * 124.91691 * 224.99560 * 16 14 13 21 21 C 1.52999 * 109.47069 * 205.28486 * 14 13 2 22 22 C 1.52999 * 117.50212 * 243.90355 * 21 14 13 23 23 C 1.52996 * 60.00142 * 252.51181 * 22 21 14 24 24 H 1.09006 * 109.46684 * 175.19218 * 1 2 3 25 25 H 1.09000 * 109.46989 * 295.18495 * 1 2 3 26 26 H 1.09000 * 109.47242 * 55.18935 * 1 2 3 27 27 H 1.09000 * 109.47182 * 305.00415 * 4 2 1 28 28 H 1.08997 * 109.46827 * 65.00052 * 4 2 1 29 29 H 0.97004 * 119.99264 * 179.97438 * 8 7 5 30 30 H 1.00903 * 111.00004 * 319.86797 * 13 2 1 31 31 H 1.08002 * 122.75228 * 180.22884 * 18 17 16 32 32 H 1.08004 * 126.03362 * 179.71783 * 19 18 17 33 33 H 1.09003 * 115.54817 * 29.61644 * 21 14 13 34 34 H 1.08998 * 117.49955 * 0.02562 * 22 21 14 35 35 H 1.09000 * 117.50071 * 145.01997 * 22 21 14 36 36 H 1.08995 * 117.50148 * 252.50673 * 23 22 21 37 37 H 1.09002 * 117.51846 * 107.48261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3125 6 1 4.0790 -0.0854 0.5394 7 6 4.2305 -1.1927 2.3582 8 7 5.5413 -1.1003 2.4131 9 14 3.3017 -2.1079 3.6957 10 1 3.1711 -3.5381 3.3177 11 1 4.0450 -2.0004 4.9767 12 1 1.9505 -1.5129 3.8558 13 7 2.0197 -0.6924 -1.1996 14 6 2.0560 0.2157 -2.3537 15 1 1.2229 0.9157 -2.2915 16 6 3.3551 0.9794 -2.3512 17 7 4.5163 0.4607 -2.1337 18 6 5.5537 1.2725 -2.1719 19 6 5.2497 2.5487 -2.4266 20 16 3.5029 2.6599 -2.6292 21 6 1.9443 -0.5966 -3.6454 22 6 3.1376 -0.5693 -4.6026 23 6 1.8519 0.1783 -4.9614 24 1 -0.3633 -1.0241 -0.0861 25 1 -0.3633 0.4373 0.9300 26 1 -0.3634 0.5867 -0.8438 27 1 1.6055 -0.2619 2.1369 28 1 1.7518 -1.7715 1.2054 29 1 6.0256 -1.5064 3.1490 30 1 1.4612 -1.5087 -1.3992 31 1 6.5662 0.9348 -2.0068 32 1 5.9508 3.3673 -2.4954 33 1 1.3815 -1.5269 -3.5686 34 1 4.0025 0.0270 -4.3118 35 1 3.3603 -1.4818 -5.1555 36 1 1.2286 -0.2423 -5.7505 37 1 1.8703 1.2668 -4.9069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381453082.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:58 Heat of formation + Delta-G solvation = 57.357166 kcal Electronic energy + Delta-G solvation = -18547.238509 eV Core-core repulsion = 15837.660462 eV Total energy + Delta-G solvation = -2709.578048 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92410 -38.89143 -37.36476 -34.63602 -32.74156 -30.76474 -29.40747 -27.42159 -25.23524 -24.28330 -23.22911 -22.38075 -21.00801 -20.18958 -18.68773 -18.67715 -17.41653 -16.47428 -16.31750 -16.04434 -15.72160 -15.03244 -14.93881 -14.53147 -14.39290 -14.12421 -13.77192 -13.53671 -13.36444 -13.02836 -12.55339 -12.46745 -12.38740 -12.28432 -11.92099 -11.66546 -11.44837 -11.25390 -11.03262 -10.99451 -10.61553 -10.28851 -10.14911 -9.70761 -9.01457 -8.09534 -6.06562 -0.09766 0.54511 0.86325 1.37205 1.38419 1.48944 2.10736 2.45941 2.82973 3.20739 3.30580 3.53187 3.80603 3.94811 4.18092 4.22250 4.31681 4.38408 4.40840 4.49775 4.56028 4.61049 4.68367 4.81866 4.96320 5.04650 5.17645 5.18587 5.22079 5.28670 5.29699 5.39257 5.54889 5.82177 6.31427 6.58776 6.76334 7.06192 7.12663 7.52610 9.07903 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.007093 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.053043 B = 3946.549535 C = 4616.302089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H 0.044 0.956 4 C -0.002 4.002 5 C -0.482 4.482 6 H 0.047 0.953 7 C -0.008 4.008 8 N -0.960 5.960 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.247 1.247 13 N -0.664 5.664 14 C 0.197 3.803 15 H 0.074 0.926 16 C 0.064 3.936 17 N -0.464 5.464 18 C 0.014 3.986 19 C -0.256 4.256 20 S 0.110 5.890 21 C -0.153 4.153 22 C -0.182 4.182 23 C -0.154 4.154 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.256 0.744 30 H 0.349 0.651 31 H 0.169 0.831 32 H 0.202 0.798 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.574 6.313 -14.696 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.004 4.004 3 H 0.062 0.938 4 C -0.040 4.040 5 C -0.521 4.521 6 H 0.065 0.935 7 C -0.202 4.202 8 N -0.604 5.604 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.171 1.171 13 N -0.297 5.297 14 C 0.083 3.917 15 H 0.092 0.908 16 C -0.216 4.216 17 N -0.177 5.177 18 C -0.136 4.136 19 C -0.395 4.395 20 S 0.363 5.637 21 C -0.172 4.172 22 C -0.219 4.219 23 C -0.191 4.191 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.035 0.965 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.171 0.829 31 H 0.186 0.814 32 H 0.219 0.781 33 H 0.145 0.855 34 H 0.092 0.908 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.437 6.591 -14.524 19.061 hybrid contribution 0.741 -0.759 1.118 1.541 sum -9.696 5.832 -13.406 17.543 Atomic orbital electron populations 1.22471 0.95413 1.02676 1.02556 1.21346 0.92568 0.96180 0.90313 0.93764 1.19567 0.94737 0.95801 0.93906 1.21467 0.92093 1.31729 1.06790 0.93499 1.25936 0.95464 0.97957 1.00829 1.70116 1.08407 1.48521 1.33328 0.85787 0.79726 0.79331 0.78425 1.20109 1.21943 1.17076 1.59987 1.59628 1.08327 1.01787 1.19592 0.88550 0.92946 0.90646 0.90826 1.27408 0.98107 0.94229 1.01823 1.66129 0.98631 1.38902 1.14001 1.22100 0.99449 0.89881 1.02199 1.27310 0.98375 1.01872 1.11928 1.83398 1.03652 1.09970 1.66648 1.22354 1.04189 1.01635 0.89057 1.22991 0.92576 1.03092 1.03258 1.23095 0.99759 0.99146 0.97085 0.91521 0.91964 0.91411 0.96509 0.96690 0.93565 0.82945 0.81427 0.78082 0.85532 0.90804 0.88394 0.86079 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.72 9.16 71.98 0.66 -4.06 16 2 C 0.11 4.00 2.35 44.92 0.11 4.11 16 3 H 0.04 1.85 7.66 -2.39 -0.02 1.83 16 4 C 0.00 -0.11 3.72 29.85 0.11 0.00 16 5 C -0.48 -28.70 9.39 25.60 0.24 -28.46 16 6 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 7 C -0.01 -0.50 5.47 84.66 0.46 -0.03 16 8 N -0.96 -63.70 13.96 21.45 0.30 -63.40 16 9 Si 0.94 46.77 27.47 68.60 1.88 48.66 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 12 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 13 N -0.66 -24.03 5.72 -473.31 -2.71 -26.74 16 14 C 0.20 5.93 2.70 44.17 0.12 6.05 16 15 H 0.07 1.95 7.07 -2.39 -0.02 1.93 16 16 C 0.06 2.22 4.09 88.52 0.36 2.58 16 17 N -0.46 -19.19 9.42 -191.44 -1.80 -21.00 16 18 C 0.01 0.53 11.35 83.66 0.95 1.48 16 19 C -0.26 -7.57 11.37 66.78 0.76 -6.82 16 20 S 0.11 3.09 23.18 -56.49 -1.31 1.78 16 21 C -0.15 -3.75 5.85 -10.79 -0.06 -3.82 16 22 C -0.18 -4.71 9.61 30.59 0.29 -4.41 16 23 C -0.15 -2.97 10.11 30.59 0.31 -2.66 16 24 H 0.07 1.66 8.05 -2.38 -0.02 1.64 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.53 7.41 -2.39 -0.02 1.51 16 27 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 28 H 0.01 0.69 7.57 -2.39 -0.02 0.68 16 29 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 30 H 0.35 11.00 7.83 -89.69 -0.70 10.30 16 31 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 32 H 0.20 4.43 8.06 -2.91 -0.02 4.40 16 33 H 0.13 2.74 7.78 -2.39 -0.02 2.72 16 34 H 0.07 2.31 5.75 -2.39 -0.01 2.30 16 35 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -74.89 316.96 0.98 -73.91 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.30 Total: 22.82 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 4.31 Total: -36.03 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.21 Total: -111.13 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.66 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.31 Total: 1.78 kcal Total: -74.89 0.98 -73.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381453082.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.270 kcal (2) G-P(sol) polarization free energy of solvation -74.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds