Wall clock time and date at job start Mon Mar 30 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47123 * 2 1 4 4 C 1.33322 * 122.71172 * 125.00363 * 3 2 1 5 5 S 1.76167 * 108.09781 * 179.78697 * 4 3 2 6 6 C 1.70960 * 90.35478 * 0.30239 * 5 4 3 7 7 N 1.38615 * 124.94840 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00055 * 359.69501 * 7 6 5 9 9 H 1.09002 * 110.43598 * 327.54127 * 8 7 6 10 10 C 1.54887 * 110.48872 * 90.22500 * 8 7 6 11 11 C 1.54885 * 102.75079 * 156.61982 * 10 8 7 12 12 C 1.54265 * 104.19515 * 322.06185 * 11 10 8 13 13 H 1.09008 * 110.07375 * 264.29979 * 12 11 10 14 14 C 1.50702 * 110.03326 * 142.89305 * 12 11 10 15 15 H 1.07999 * 120.00167 * 242.82637 * 14 12 11 16 16 C 1.37881 * 119.99907 * 62.83292 * 14 12 11 17 17 N 1.31517 * 119.99952 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99843 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46940 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47446 * 119.99993 * 18 16 14 21 21 H 1.48508 * 109.46630 * 239.99637 * 18 16 14 22 22 C 1.53873 * 106.60155 * 23.60524 * 12 11 10 23 23 N 1.29689 * 110.10273 * 359.69322 * 6 5 4 24 24 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46970 * 300.00250 * 1 2 3 26 26 H 1.08995 * 109.47194 * 59.99835 * 1 2 3 27 27 H 1.09006 * 109.46855 * 240.00292 * 2 1 3 28 28 H 1.08995 * 109.47194 * 120.00165 * 2 1 3 29 29 H 1.08008 * 125.95036 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99644 * 179.42112 * 7 6 5 31 31 H 1.08993 * 110.75513 * 274.94069 * 10 8 7 32 32 H 1.09007 * 110.75157 * 38.30259 * 10 8 7 33 33 H 1.08997 * 110.48958 * 203.38075 * 11 10 8 34 34 H 1.09000 * 110.48568 * 80.73572 * 11 10 8 35 35 H 0.96995 * 119.99839 * 179.97438 * 17 16 14 36 36 H 1.09000 * 110.03564 * 240.71892 * 22 12 11 37 37 H 1.09006 * 110.03046 * 119.28175 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8792 1.8856 0.9189 5 16 3.2118 3.5761 0.5512 6 6 2.1700 3.4978 -0.8020 7 7 1.9045 4.5522 -1.6617 8 6 2.5325 5.8566 -1.4370 9 1 2.6761 6.0312 -0.3707 10 6 3.8829 5.9451 -2.1903 11 6 4.0810 7.4720 -2.3586 12 6 2.6630 8.0083 -2.6439 13 1 2.5080 8.1030 -3.7187 14 6 2.4726 9.3455 -1.9755 15 1 1.7243 9.4627 -1.2056 16 6 3.2537 10.4193 -2.3468 17 7 4.1653 10.2764 -3.2840 18 14 3.0182 12.0766 -1.5178 19 1 1.9376 11.9740 -0.5044 20 1 4.2831 12.4823 -0.8540 21 1 2.6463 13.0912 -2.5365 22 6 1.6784 6.9812 -2.0580 23 7 1.6688 2.3066 -0.9104 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.2926 1.3226 1.7427 30 1 1.3060 4.4253 -2.4145 31 1 4.6870 5.5146 -1.5936 32 1 3.8162 5.4548 -3.1616 33 1 4.7438 7.6805 -3.1984 34 1 4.4766 7.9087 -1.4416 35 1 4.7145 11.0319 -3.5455 36 1 1.0463 6.5767 -2.8485 37 1 1.0629 7.4499 -1.2900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382044316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:24 Heat of formation + Delta-G solvation = 22.366727 kcal Electronic energy + Delta-G solvation = -17610.353774 eV Core-core repulsion = 14899.258427 eV Total energy + Delta-G solvation = -2711.095347 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.66713 -37.98467 -34.81875 -32.96285 -31.87764 -28.97312 -28.29040 -26.77270 -24.49572 -23.86497 -22.60873 -20.59224 -19.48586 -18.75134 -17.85519 -16.56704 -16.21045 -15.25680 -14.98642 -14.55021 -14.43836 -13.94706 -13.79739 -13.06780 -13.00093 -12.57975 -12.43102 -12.11257 -11.87454 -11.39915 -11.16316 -11.14361 -10.87178 -10.80189 -10.60865 -10.28726 -10.21003 -9.75815 -9.70094 -9.42027 -9.35236 -8.92419 -8.81196 -8.43059 -7.45410 -6.06339 -4.09563 1.22787 1.41617 2.04187 3.10477 3.25919 3.26894 3.35362 3.38752 4.40063 4.67511 5.00506 5.17120 5.24129 5.29504 5.37360 5.43294 5.53036 5.66288 5.71455 5.80831 6.03828 6.10835 6.18468 6.23523 6.35631 6.39379 6.48610 6.59057 6.83398 6.99011 7.12302 7.26512 7.59361 7.65587 7.78350 7.93934 8.17506 8.37122 8.93340 9.55011 11.03057 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043945 B = 0.003814 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.001824 B = 7339.044557 C = 7405.379220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.046 4.046 3 C 0.118 3.882 4 C -0.324 4.324 5 S 0.091 5.909 6 C 0.333 3.667 7 N -0.680 5.680 8 C 0.141 3.859 9 H 0.082 0.918 10 C -0.143 4.143 11 C -0.091 4.091 12 C 0.047 3.953 13 H 0.032 0.968 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.116 4.116 23 N -0.564 5.564 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.408 0.592 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 -16.098 6.303 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C -0.014 4.014 4 C -0.465 4.465 5 S 0.338 5.662 6 C -0.039 4.039 7 N -0.318 5.318 8 C 0.037 3.963 9 H 0.100 0.900 10 C -0.182 4.182 11 C -0.129 4.129 12 C 0.028 3.972 13 H 0.050 0.950 14 C -0.554 4.554 15 H 0.075 0.925 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.154 4.154 23 N -0.291 5.291 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.184 0.816 30 H 0.246 0.754 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.088 -15.091 6.254 16.469 hybrid contribution -0.510 0.118 0.114 0.536 sum -2.598 -14.973 6.368 16.477 Atomic orbital electron populations 1.21648 0.94509 1.01183 1.02662 1.20102 0.96508 0.89511 1.02520 1.19779 0.95112 0.96286 0.90245 1.26150 1.13078 0.97543 1.09731 1.84084 1.46780 1.10599 1.24713 1.23652 0.95093 0.90574 0.94583 1.44583 1.50675 1.07403 1.29103 1.22311 0.93998 0.79930 1.00057 0.89969 1.23095 0.95277 1.00508 0.99315 1.22274 1.00227 0.89028 1.01412 1.19225 0.89454 0.92082 0.96432 0.95018 1.21302 1.19154 0.94135 1.20837 0.92502 1.24989 0.95218 0.98790 0.94995 1.69971 1.21831 1.31051 1.29778 0.86586 0.78024 0.84233 0.79473 1.19778 1.21027 1.21080 1.22566 0.98526 0.94894 0.99450 1.66231 1.32235 1.00019 1.30605 0.92685 0.92970 0.91751 0.90514 0.90637 0.81575 0.75392 0.92843 0.92020 0.91995 0.92498 0.93069 0.93147 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.81 37.16 0.36 -1.04 16 2 C -0.05 -0.48 6.43 -27.88 -0.18 -0.66 16 3 C 0.12 1.61 6.07 -84.18 -0.51 1.10 16 4 C -0.32 -4.17 11.04 29.02 0.32 -3.85 16 5 S 0.09 1.29 21.77 -107.50 -2.34 -1.05 16 6 C 0.33 5.26 8.24 -87.67 -0.72 4.53 16 7 N -0.68 -10.56 5.31 -54.17 -0.29 -10.85 16 8 C 0.14 2.40 3.18 -66.27 -0.21 2.18 16 9 H 0.08 1.41 7.22 -51.93 -0.37 1.04 16 10 C -0.14 -2.55 6.58 -24.74 -0.16 -2.71 16 11 C -0.09 -1.99 5.44 -25.08 -0.14 -2.12 16 12 C 0.05 1.09 2.82 -90.65 -0.26 0.84 16 13 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 14 C -0.52 -13.50 8.36 -34.44 -0.29 -13.78 16 15 H 0.06 1.47 7.33 -52.49 -0.38 1.09 16 16 C 0.06 1.66 5.33 -17.82 -0.09 1.57 16 17 N -0.89 -24.72 12.43 55.43 0.69 -24.03 16 18 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.12 -2.21 6.18 -25.61 -0.16 -2.36 16 23 N -0.56 -8.91 10.40 -11.36 -0.12 -9.02 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.17 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.41 5.96 8.49 -40.82 -0.35 5.61 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.06 1.46 7.97 -51.93 -0.41 1.04 16 34 H 0.06 1.32 7.85 -51.93 -0.41 0.91 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.05 0.88 7.73 -51.93 -0.40 0.47 16 37 H 0.07 1.28 7.37 -51.93 -0.38 0.90 16 LS Contribution 315.52 15.07 4.75 4.75 Total: -1.00 -27.75 315.52 -10.00 -37.75 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -5.64 Total: 3.06 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -2.03 Total: -16.31 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.28 Total: -43.90 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.34 Total: -1.05 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.75 -10.00 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382044316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.113 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds