Wall clock time and date at job start Mon Mar 30 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47123 * 2 1 4 4 C 1.33322 * 122.71172 * 125.00363 * 3 2 1 5 5 S 1.76167 * 108.09781 * 179.78697 * 4 3 2 6 6 C 1.70960 * 90.35478 * 0.30239 * 5 4 3 7 7 N 1.38615 * 124.94840 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00055 * 359.69501 * 7 6 5 9 9 H 1.09002 * 110.43598 * 327.54127 * 8 7 6 10 10 C 1.54887 * 110.48872 * 90.22500 * 8 7 6 11 11 C 1.54885 * 102.75079 * 156.61982 * 10 8 7 12 12 C 1.54265 * 104.19515 * 322.06185 * 11 10 8 13 13 H 1.09008 * 110.07375 * 264.29979 * 12 11 10 14 14 C 1.50702 * 110.03326 * 142.89305 * 12 11 10 15 15 H 1.07999 * 120.00167 * 242.82637 * 14 12 11 16 16 C 1.37881 * 119.99907 * 62.83292 * 14 12 11 17 17 N 1.31517 * 119.99952 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99843 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.46940 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47446 * 119.99993 * 18 16 14 21 21 H 1.48508 * 109.46630 * 239.99637 * 18 16 14 22 22 C 1.53873 * 106.60155 * 23.60524 * 12 11 10 23 23 N 1.29689 * 110.10273 * 359.69322 * 6 5 4 24 24 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46970 * 300.00250 * 1 2 3 26 26 H 1.08995 * 109.47194 * 59.99835 * 1 2 3 27 27 H 1.09006 * 109.46855 * 240.00292 * 2 1 3 28 28 H 1.08995 * 109.47194 * 120.00165 * 2 1 3 29 29 H 1.08008 * 125.95036 * 0.02562 * 4 3 2 30 30 H 0.97004 * 119.99644 * 179.42112 * 7 6 5 31 31 H 1.08993 * 110.75513 * 274.94069 * 10 8 7 32 32 H 1.09007 * 110.75157 * 38.30259 * 10 8 7 33 33 H 1.08997 * 110.48958 * 203.38075 * 11 10 8 34 34 H 1.09000 * 110.48568 * 80.73572 * 11 10 8 35 35 H 0.96995 * 119.99839 * 179.97438 * 17 16 14 36 36 H 1.09000 * 110.03564 * 240.71892 * 22 12 11 37 37 H 1.09006 * 110.03046 * 119.28175 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8792 1.8856 0.9189 5 16 3.2118 3.5761 0.5512 6 6 2.1700 3.4978 -0.8020 7 7 1.9045 4.5522 -1.6617 8 6 2.5325 5.8566 -1.4370 9 1 2.6761 6.0312 -0.3707 10 6 3.8829 5.9451 -2.1903 11 6 4.0810 7.4720 -2.3586 12 6 2.6630 8.0083 -2.6439 13 1 2.5080 8.1030 -3.7187 14 6 2.4726 9.3455 -1.9755 15 1 1.7243 9.4627 -1.2056 16 6 3.2537 10.4193 -2.3468 17 7 4.1653 10.2764 -3.2840 18 14 3.0182 12.0766 -1.5178 19 1 1.9376 11.9740 -0.5044 20 1 4.2831 12.4823 -0.8540 21 1 2.6463 13.0912 -2.5365 22 6 1.6784 6.9812 -2.0580 23 7 1.6688 2.3066 -0.9104 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.2926 1.3226 1.7427 30 1 1.3060 4.4253 -2.4145 31 1 4.6870 5.5146 -1.5936 32 1 3.8162 5.4548 -3.1616 33 1 4.7438 7.6805 -3.1984 34 1 4.4766 7.9087 -1.4416 35 1 4.7145 11.0319 -3.5455 36 1 1.0463 6.5767 -2.8485 37 1 1.0629 7.4499 -1.2900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382044316.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:24 Heat of formation + Delta-G solvation = 7.828489 kcal Electronic energy + Delta-G solvation = -17610.984199 eV Core-core repulsion = 14899.258427 eV Total energy + Delta-G solvation = -2711.725772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77193 -39.47403 -36.20288 -34.39015 -33.32199 -30.15991 -29.93469 -28.30701 -25.89798 -25.30835 -23.62654 -21.94196 -21.11803 -20.10653 -19.02560 -18.45689 -17.36633 -16.70064 -16.44003 -16.02206 -15.62520 -15.20354 -14.88760 -14.50579 -14.27499 -14.06758 -13.80727 -13.44411 -13.03366 -12.93493 -12.71463 -12.52481 -12.40061 -12.10656 -11.99172 -11.83623 -11.60182 -11.51382 -11.27218 -10.91690 -10.75788 -10.51161 -10.46617 -10.05071 -8.60218 -8.11116 -6.20283 0.13589 0.30748 0.98461 1.41032 1.44102 1.54251 2.02288 2.04545 2.44652 3.19972 3.65455 3.83535 3.90079 4.16820 4.21582 4.42845 4.48883 4.63107 4.69462 4.71791 4.80113 4.84947 4.92774 4.98418 5.07395 5.13152 5.22408 5.29020 5.35728 5.43079 5.48440 5.67677 5.78863 5.91404 5.96336 6.38035 6.44064 6.91045 7.06664 7.47298 8.97639 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043945 B = 0.003814 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.001824 B = 7339.044557 C = 7405.379220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.045 4.045 3 C 0.096 3.904 4 C -0.311 4.311 5 S 0.089 5.911 6 C 0.312 3.688 7 N -0.680 5.680 8 C 0.160 3.840 9 H 0.084 0.916 10 C -0.129 4.129 11 C -0.082 4.082 12 C 0.039 3.961 13 H 0.001 0.999 14 C -0.529 4.529 15 H 0.056 0.944 16 C 0.012 3.988 17 N -0.918 5.918 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.284 1.284 22 C -0.107 4.107 23 N -0.578 5.578 24 H 0.077 0.923 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.197 0.803 30 H 0.412 0.588 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.038 0.962 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -17.761 7.864 19.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.034 4.034 4 C -0.452 4.452 5 S 0.336 5.664 6 C -0.059 4.059 7 N -0.319 5.319 8 C 0.055 3.945 9 H 0.102 0.898 10 C -0.168 4.168 11 C -0.121 4.121 12 C 0.020 3.980 13 H 0.020 0.980 14 C -0.568 4.568 15 H 0.074 0.926 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.776 3.224 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.146 4.146 23 N -0.305 5.305 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.120 0.880 29 H 0.214 0.786 30 H 0.250 0.750 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.440 -16.787 7.829 18.683 hybrid contribution -0.408 0.563 -0.352 0.780 sum -2.847 -16.224 7.476 18.089 Atomic orbital electron populations 1.21612 0.94406 1.02285 1.01324 1.20239 0.96541 0.87709 1.04013 1.20334 0.95594 0.97443 0.90073 1.26555 1.12043 0.96632 1.09963 1.84083 1.46261 1.12015 1.24036 1.23783 0.96120 0.90720 0.95297 1.44287 1.51087 1.06888 1.29608 1.21912 0.92811 0.80161 0.99637 0.89827 1.22947 0.96488 0.97246 1.00124 1.22022 0.98710 0.92037 0.99331 1.19207 0.91556 0.92631 0.94612 0.98044 1.21687 1.18782 0.95584 1.20707 0.92584 1.25734 0.95127 1.02166 0.95654 1.70092 1.22705 1.31882 1.31090 0.85629 0.78039 0.80180 0.78566 1.19020 1.20764 1.20980 1.22363 0.97858 0.94579 0.99752 1.66249 1.32406 1.00336 1.31502 0.90378 0.93459 0.93882 0.90153 0.87954 0.78636 0.74985 0.91365 0.91477 0.94501 0.94273 0.93167 0.91577 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.81 71.98 0.71 -1.73 16 2 C -0.05 -0.80 6.43 29.85 0.19 -0.61 16 3 C 0.10 2.41 6.07 41.40 0.25 2.66 16 4 C -0.31 -7.10 11.04 66.71 0.74 -6.36 16 5 S 0.09 2.34 21.77 -56.49 -1.23 1.11 16 6 C 0.31 9.39 8.24 179.32 1.48 10.87 16 7 N -0.68 -20.30 5.31 -325.30 -1.73 -22.02 16 8 C 0.16 5.27 3.18 46.07 0.15 5.42 16 9 H 0.08 2.77 7.22 -2.39 -0.02 2.76 16 10 C -0.13 -4.52 6.58 31.88 0.21 -4.31 16 11 C -0.08 -3.68 5.44 31.67 0.17 -3.51 16 12 C 0.04 1.85 2.82 -10.82 -0.03 1.82 16 13 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 14 C -0.53 -28.08 8.36 25.60 0.21 -27.87 16 15 H 0.06 2.91 7.33 -2.91 -0.02 2.89 16 16 C 0.01 0.65 5.33 84.66 0.45 1.10 16 17 N -0.92 -52.35 12.43 21.45 0.27 -52.09 16 18 Si 0.95 42.83 29.54 68.60 2.03 44.86 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 C -0.11 -4.04 6.18 31.32 0.19 -3.85 16 23 N -0.58 -17.35 10.40 -189.86 -1.98 -19.33 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.05 0.86 8.14 -2.38 -0.02 0.85 16 26 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 27 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.10 1.26 8.03 -2.39 -0.02 1.24 16 29 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 30 H 0.41 11.57 8.49 -92.71 -0.79 10.78 16 31 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 33 H 0.04 1.79 7.97 -2.39 -0.02 1.77 16 34 H 0.04 1.85 7.85 -2.39 -0.02 1.83 16 35 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 36 H 0.07 2.26 7.73 -2.39 -0.02 2.24 16 37 H 0.06 2.40 7.37 -2.38 -0.02 2.38 16 Total: -1.00 -59.84 315.52 2.35 -57.49 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.27 Total: 16.36 kcal Atomic # 6 Polarization: -31.10 SS G_CDS: 4.72 Total: -26.38 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -3.44 Total: -93.44 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.23 Total: 1.11 kcal Total: -59.84 2.35 -57.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382044316.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.317 kcal (2) G-P(sol) polarization free energy of solvation -59.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds