Wall clock time and date at job start Mon Mar 30 2020 06:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47235 * 2 1 4 4 C 1.33318 * 122.71236 * 124.99889 * 3 2 1 5 5 S 1.76169 * 108.10020 * 180.02562 * 4 3 2 6 6 C 1.70967 * 90.35317 * 0.02562 * 5 4 3 7 7 N 1.38611 * 124.94919 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99849 * 0.02562 * 7 6 5 9 9 H 1.09002 * 110.01868 * 325.70347 * 8 7 6 10 10 C 1.53873 * 110.03147 * 87.09331 * 8 7 6 11 11 C 1.54269 * 106.59646 * 119.33268 * 10 8 7 12 12 C 1.54882 * 104.19831 * 23.61137 * 11 10 8 13 13 H 1.08998 * 110.75605 * 80.36842 * 12 11 10 14 14 C 1.50701 * 110.75870 * 203.55914 * 12 11 10 15 15 H 1.08003 * 120.00469 * 118.54024 * 14 12 11 16 16 C 1.37881 * 119.99833 * 298.54944 * 14 12 11 17 17 N 1.31512 * 119.99828 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99915 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46789 * 59.99903 * 18 16 14 20 20 H 1.48504 * 109.47018 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47092 * 300.00004 * 18 16 14 22 22 C 1.54273 * 110.07287 * 204.28249 * 8 7 6 23 23 N 1.29689 * 110.10255 * 0.24081 * 6 5 4 24 24 H 1.08997 * 109.47123 * 60.00085 * 1 2 3 25 25 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47052 * 299.99708 * 1 2 3 27 27 H 1.09001 * 109.47534 * 239.99855 * 2 1 3 28 28 H 1.08999 * 109.47638 * 119.99894 * 2 1 3 29 29 H 1.07998 * 125.95098 * 0.02562 * 4 3 2 30 30 H 0.97002 * 120.00310 * 180.02562 * 7 6 5 31 31 H 1.08996 * 110.03511 * 238.61506 * 10 8 7 32 32 H 1.09002 * 110.03347 * 0.04582 * 10 8 7 33 33 H 1.09000 * 110.48429 * 142.29450 * 11 10 8 34 34 H 1.09001 * 110.48672 * 264.92943 * 11 10 8 35 35 H 0.97003 * 119.99988 * 180.02562 * 17 16 14 36 36 H 1.09001 * 110.48533 * 335.76640 * 22 8 7 37 37 H 1.08999 * 110.48202 * 98.40568 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8791 1.8856 0.9189 5 16 3.2065 3.5780 0.5552 6 6 2.1693 3.4981 -0.8015 7 7 1.9026 4.5529 -1.6603 8 6 2.5305 5.8572 -1.4355 9 1 2.6424 6.0382 -0.3664 10 6 3.9052 5.9063 -2.1250 11 6 3.8393 7.0499 -3.1583 12 6 2.7180 7.9773 -2.6276 13 1 3.0936 8.6218 -1.8329 14 6 2.1304 8.7989 -3.7460 15 1 1.0854 8.6977 -3.9991 16 6 2.9271 9.6798 -4.4463 17 7 4.1996 9.8033 -4.1380 18 14 2.1990 10.6977 -5.8331 19 1 1.1049 11.5490 -5.3004 20 1 3.2551 11.5603 -6.4212 21 1 1.6580 9.7935 -6.8794 22 6 1.6772 6.9727 -2.0739 23 7 1.6641 2.3083 -0.9069 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2924 1.3227 1.7427 30 1 1.3002 4.4274 -2.4102 31 1 4.6842 6.1111 -1.3907 32 1 4.1049 4.9599 -2.6276 33 1 4.7889 7.5835 -3.1978 34 1 3.5784 6.6604 -4.1423 35 1 4.7600 10.4233 -4.6305 36 1 1.0671 6.5707 -2.8827 37 1 1.0489 7.4500 -1.3218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382044321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:29 Heat of formation + Delta-G solvation = 23.181784 kcal Electronic energy + Delta-G solvation = -17606.692155 eV Core-core repulsion = 14895.632152 eV Total energy + Delta-G solvation = -2711.060004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67588 -38.00774 -34.75609 -32.96199 -31.86846 -28.96472 -28.27989 -26.83010 -24.50609 -23.89923 -22.65522 -20.44085 -19.41743 -18.91413 -17.76587 -16.43150 -16.26375 -15.23109 -14.82892 -14.78924 -14.50307 -14.04679 -13.86270 -13.10077 -12.83135 -12.56510 -12.46924 -11.92555 -11.90393 -11.48293 -11.20834 -11.10833 -10.94544 -10.80844 -10.63616 -10.31350 -10.15994 -9.80112 -9.61277 -9.39359 -9.30287 -8.93875 -8.88651 -8.42448 -7.46305 -6.06201 -4.09981 1.22435 1.40672 2.02902 3.10638 3.26614 3.29031 3.34176 3.36778 4.39694 4.67783 5.00581 5.19741 5.24264 5.25816 5.35630 5.44859 5.52673 5.61201 5.71563 5.80950 6.04118 6.08886 6.18853 6.27386 6.34923 6.42722 6.55194 6.58654 6.79978 6.93018 7.17214 7.26233 7.61490 7.64951 7.80325 7.95403 8.18178 8.35596 8.91555 9.54676 11.02835 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043143 B = 0.003826 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.843861 B = 7315.869252 C = 7699.709095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C 0.119 3.881 4 C -0.324 4.324 5 S 0.086 5.914 6 C 0.334 3.666 7 N -0.678 5.678 8 C 0.141 3.859 9 H 0.074 0.926 10 C -0.143 4.143 11 C -0.099 4.099 12 C 0.053 3.947 13 H 0.033 0.967 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.119 4.119 23 N -0.564 5.564 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.167 0.833 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -14.785 9.132 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.087 4.087 3 C -0.013 4.013 4 C -0.465 4.465 5 S 0.333 5.667 6 C -0.038 4.038 7 N -0.316 5.316 8 C 0.037 3.963 9 H 0.092 0.908 10 C -0.182 4.182 11 C -0.137 4.137 12 C 0.034 3.966 13 H 0.051 0.949 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.157 4.157 23 N -0.291 5.291 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.184 0.816 30 H 0.248 0.752 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.863 -13.780 9.133 16.636 hybrid contribution -0.767 -0.308 -1.077 1.358 sum -2.631 -14.087 8.056 16.440 Atomic orbital electron populations 1.21646 0.94491 1.01193 1.02666 1.20105 0.96523 0.89509 1.02533 1.19789 0.94953 0.96266 0.90291 1.26120 1.13270 0.97374 1.09750 1.83998 1.47506 1.10648 1.24510 1.23664 0.95012 0.90640 0.94509 1.44662 1.50388 1.07252 1.29320 1.22122 0.94230 0.80442 0.99502 0.90847 1.22802 0.95056 1.00621 0.99760 1.22306 1.02005 0.93690 0.95748 1.19551 0.90192 0.91389 0.95436 0.94864 1.21036 0.95792 1.22232 1.16491 0.92633 1.24963 0.94866 0.96735 0.97231 1.69936 1.05071 1.36707 1.40923 0.86682 0.78753 0.80244 0.82461 1.20279 1.21315 1.20291 1.22751 0.98710 0.95182 0.99036 1.66237 1.32070 1.00059 1.30703 0.91721 0.92679 0.92988 0.90491 0.90640 0.81585 0.75177 0.92244 0.92631 0.90963 0.93311 0.92935 0.91616 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.81 37.16 0.36 -1.05 16 2 C -0.05 -0.48 6.43 -27.88 -0.18 -0.66 16 3 C 0.12 1.63 6.08 -84.18 -0.51 1.12 16 4 C -0.32 -4.14 11.04 29.01 0.32 -3.82 16 5 S 0.09 1.20 21.79 -107.50 -2.34 -1.15 16 6 C 0.33 5.27 8.24 -87.68 -0.72 4.55 16 7 N -0.68 -10.69 5.14 -54.69 -0.28 -10.97 16 8 C 0.14 2.37 3.19 -66.81 -0.21 2.15 16 9 H 0.07 1.18 7.26 -51.93 -0.38 0.80 16 10 C -0.14 -2.58 6.59 -25.61 -0.17 -2.75 16 11 C -0.10 -2.19 5.57 -25.07 -0.14 -2.33 16 12 C 0.05 1.24 2.81 -89.78 -0.25 0.98 16 13 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 14 C -0.52 -13.59 8.55 -34.44 -0.29 -13.89 16 15 H 0.06 1.44 7.79 -52.48 -0.41 1.03 16 16 C 0.06 1.72 5.33 -17.82 -0.10 1.63 16 17 N -0.89 -24.70 12.02 55.43 0.67 -24.03 16 18 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 C -0.12 -2.25 5.95 -25.07 -0.15 -2.40 16 23 N -0.56 -8.97 10.39 -11.36 -0.12 -9.09 16 24 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.41 6.27 8.48 -40.82 -0.35 5.92 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 33 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 34 H 0.05 1.13 8.04 -51.93 -0.42 0.71 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 1.24 7.64 -51.93 -0.40 0.84 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 315.60 15.07 4.76 4.76 Total: -1.00 -27.71 315.60 -10.05 -37.76 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.67 Total: 3.42 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.04 Total: -16.45 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.27 Total: -44.09 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.34 Total: -1.15 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.71 -10.05 -37.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382044321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.941 kcal (2) G-P(sol) polarization free energy of solvation -27.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds