Wall clock time and date at job start Mon Mar 30 2020 06:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47235 * 2 1 4 4 C 1.33318 * 122.71236 * 124.99889 * 3 2 1 5 5 S 1.76169 * 108.10020 * 180.02562 * 4 3 2 6 6 C 1.70967 * 90.35317 * 0.02562 * 5 4 3 7 7 N 1.38611 * 124.94919 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99849 * 0.02562 * 7 6 5 9 9 H 1.09002 * 110.01868 * 325.70347 * 8 7 6 10 10 C 1.53873 * 110.03147 * 87.09331 * 8 7 6 11 11 C 1.54269 * 106.59646 * 119.33268 * 10 8 7 12 12 C 1.54882 * 104.19831 * 23.61137 * 11 10 8 13 13 H 1.08998 * 110.75605 * 80.36842 * 12 11 10 14 14 C 1.50701 * 110.75870 * 203.55914 * 12 11 10 15 15 H 1.08003 * 120.00469 * 118.54024 * 14 12 11 16 16 C 1.37881 * 119.99833 * 298.54944 * 14 12 11 17 17 N 1.31512 * 119.99828 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99915 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46789 * 59.99903 * 18 16 14 20 20 H 1.48504 * 109.47018 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47092 * 300.00004 * 18 16 14 22 22 C 1.54273 * 110.07287 * 204.28249 * 8 7 6 23 23 N 1.29689 * 110.10255 * 0.24081 * 6 5 4 24 24 H 1.08997 * 109.47123 * 60.00085 * 1 2 3 25 25 H 1.09004 * 109.46701 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47052 * 299.99708 * 1 2 3 27 27 H 1.09001 * 109.47534 * 239.99855 * 2 1 3 28 28 H 1.08999 * 109.47638 * 119.99894 * 2 1 3 29 29 H 1.07998 * 125.95098 * 0.02562 * 4 3 2 30 30 H 0.97002 * 120.00310 * 180.02562 * 7 6 5 31 31 H 1.08996 * 110.03511 * 238.61506 * 10 8 7 32 32 H 1.09002 * 110.03347 * 0.04582 * 10 8 7 33 33 H 1.09000 * 110.48429 * 142.29450 * 11 10 8 34 34 H 1.09001 * 110.48672 * 264.92943 * 11 10 8 35 35 H 0.97003 * 119.99988 * 180.02562 * 17 16 14 36 36 H 1.09001 * 110.48533 * 335.76640 * 22 8 7 37 37 H 1.08999 * 110.48202 * 98.40568 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8791 1.8856 0.9189 5 16 3.2065 3.5780 0.5552 6 6 2.1693 3.4981 -0.8015 7 7 1.9026 4.5529 -1.6603 8 6 2.5305 5.8572 -1.4355 9 1 2.6424 6.0382 -0.3664 10 6 3.9052 5.9063 -2.1250 11 6 3.8393 7.0499 -3.1583 12 6 2.7180 7.9773 -2.6276 13 1 3.0936 8.6218 -1.8329 14 6 2.1304 8.7989 -3.7460 15 1 1.0854 8.6977 -3.9991 16 6 2.9271 9.6798 -4.4463 17 7 4.1996 9.8033 -4.1380 18 14 2.1990 10.6977 -5.8331 19 1 1.1049 11.5490 -5.3004 20 1 3.2551 11.5603 -6.4212 21 1 1.6580 9.7935 -6.8794 22 6 1.6772 6.9727 -2.0739 23 7 1.6641 2.3083 -0.9069 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.2924 1.3227 1.7427 30 1 1.3002 4.4274 -2.4102 31 1 4.6842 6.1111 -1.3907 32 1 4.1049 4.9599 -2.6276 33 1 4.7889 7.5835 -3.1978 34 1 3.5784 6.6604 -4.1423 35 1 4.7600 10.4233 -4.6305 36 1 1.0671 6.5707 -2.8827 37 1 1.0489 7.4500 -1.3218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382044321.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:28 Heat of formation + Delta-G solvation = 8.760690 kcal Electronic energy + Delta-G solvation = -17607.317501 eV Core-core repulsion = 14895.632152 eV Total energy + Delta-G solvation = -2711.685349 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77941 -39.47881 -36.14550 -34.40322 -33.30132 -30.15789 -29.91047 -28.36198 -25.91159 -25.33014 -23.67291 -21.78253 -21.13592 -20.16781 -18.98588 -18.26879 -17.37832 -16.65634 -16.57683 -15.97966 -15.89269 -15.22234 -14.76429 -14.60500 -14.18308 -13.95982 -13.70039 -13.50897 -13.08824 -12.91346 -12.75068 -12.57530 -12.45537 -12.11127 -12.03056 -11.81370 -11.63550 -11.40027 -11.13025 -10.98585 -10.81593 -10.50283 -10.45597 -10.04536 -8.60324 -8.10985 -6.20790 0.14021 0.30825 0.98140 1.43240 1.43406 1.50915 2.02725 2.06398 2.44441 3.19928 3.64971 3.83595 3.93272 4.11740 4.21340 4.42978 4.48946 4.61874 4.69366 4.71657 4.82867 4.84929 4.98365 5.03676 5.06870 5.12113 5.22083 5.25017 5.35227 5.40107 5.48189 5.65896 5.79573 5.95684 5.99214 6.36827 6.42619 6.88731 7.07819 7.46779 8.96836 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043143 B = 0.003826 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.843861 B = 7315.869252 C = 7699.709095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C 0.096 3.904 4 C -0.311 4.311 5 S 0.094 5.906 6 C 0.311 3.689 7 N -0.681 5.681 8 C 0.158 3.842 9 H 0.086 0.914 10 C -0.131 4.131 11 C -0.090 4.090 12 C 0.043 3.957 13 H 0.009 0.991 14 C -0.534 4.534 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.273 1.273 22 C -0.108 4.108 23 N -0.580 5.580 24 H 0.041 0.959 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.197 0.803 30 H 0.410 0.590 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 -16.439 10.207 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.035 4.035 4 C -0.452 4.452 5 S 0.341 5.659 6 C -0.060 4.060 7 N -0.320 5.320 8 C 0.054 3.946 9 H 0.104 0.896 10 C -0.170 4.170 11 C -0.129 4.129 12 C 0.024 3.976 13 H 0.027 0.973 14 C -0.572 4.572 15 H 0.073 0.927 16 C -0.185 4.185 17 N -0.556 5.556 18 Si 0.776 3.224 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.146 4.146 23 N -0.308 5.308 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.121 0.879 29 H 0.214 0.786 30 H 0.248 0.752 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.364 -15.464 10.222 18.687 hybrid contribution -0.603 0.146 -1.352 1.488 sum -2.968 -15.318 8.870 17.948 Atomic orbital electron populations 1.21608 0.94414 1.02266 1.01316 1.20239 0.96543 0.87781 1.03977 1.20327 0.95558 0.97390 0.90203 1.26548 1.12111 0.96652 1.09915 1.83947 1.46685 1.11803 1.23437 1.23806 0.96154 0.90732 0.95342 1.44418 1.50820 1.06981 1.29789 1.21779 0.92731 0.80460 0.99667 0.89572 1.22667 0.96507 0.98941 0.98877 1.22067 1.00036 0.94680 0.96107 1.19520 0.91859 0.92004 0.94214 0.97263 1.21452 0.95881 1.22618 1.17232 0.92730 1.25708 0.95251 0.97980 0.99519 1.70063 1.06105 1.37391 1.41992 0.85737 0.78060 0.78815 0.79787 1.19645 1.21211 1.19813 1.22556 0.97891 0.94871 0.99314 1.66250 1.32359 1.00475 1.31688 0.93976 0.90403 0.93373 0.90287 0.87889 0.78589 0.75173 0.91082 0.92084 0.93772 0.95102 0.93119 0.91589 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.81 71.98 0.71 -1.77 16 2 C -0.05 -0.82 6.43 29.85 0.19 -0.63 16 3 C 0.10 2.41 6.08 41.40 0.25 2.66 16 4 C -0.31 -7.01 11.04 66.71 0.74 -6.28 16 5 S 0.09 2.41 21.79 -56.49 -1.23 1.18 16 6 C 0.31 9.38 8.24 179.32 1.48 10.86 16 7 N -0.68 -20.77 5.14 -326.94 -1.68 -22.45 16 8 C 0.16 5.14 3.19 45.72 0.15 5.29 16 9 H 0.09 2.62 7.26 -2.39 -0.02 2.60 16 10 C -0.13 -4.63 6.59 31.32 0.21 -4.42 16 11 C -0.09 -4.09 5.57 31.67 0.18 -3.91 16 12 C 0.04 2.03 2.81 -10.25 -0.03 2.01 16 13 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 14 C -0.53 -28.46 8.55 25.60 0.22 -28.24 16 15 H 0.05 2.84 7.79 -2.91 -0.02 2.82 16 16 C 0.01 0.79 5.33 84.66 0.45 1.24 16 17 N -0.92 -52.15 12.02 21.45 0.26 -51.90 16 18 Si 0.95 42.96 29.54 68.60 2.03 44.99 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 C -0.11 -4.05 5.95 31.67 0.19 -3.87 16 23 N -0.58 -17.68 10.39 -189.86 -1.97 -19.66 16 24 H 0.04 0.93 8.07 -2.39 -0.02 0.91 16 25 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 29 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.41 12.28 8.48 -92.71 -0.79 11.50 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.06 2.10 7.92 -2.39 -0.02 2.08 16 33 H 0.04 2.21 7.37 -2.39 -0.02 2.19 16 34 H 0.03 1.46 8.04 -2.39 -0.02 1.44 16 35 H 0.26 14.20 8.31 -92.71 -0.77 13.42 16 36 H 0.07 2.46 7.64 -2.39 -0.02 2.44 16 37 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -59.82 315.60 2.39 -57.43 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.27 Total: 17.47 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 4.72 Total: -27.06 kcal Atomic # 7 Polarization: -90.61 SS G_CDS: -3.40 Total: -94.01 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.23 Total: 1.18 kcal Total: -59.82 2.39 -57.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382044321.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.188 kcal (2) G-P(sol) polarization free energy of solvation -59.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds