Wall clock time and date at job start Mon Mar 30 2020 07:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 103.00479 * 2 1 4 4 H 1.09001 * 109.46823 * 54.99973 * 3 2 1 5 5 C 1.52998 * 109.46881 * 295.00078 * 3 2 1 6 6 C 1.53001 * 109.47406 * 174.99812 * 3 2 1 7 7 C 1.52997 * 109.47019 * 295.00355 * 6 3 2 8 8 N 1.46502 * 109.47351 * 180.02562 * 7 6 3 9 9 C 1.38821 * 120.00153 * 179.72576 * 8 7 6 10 10 C 1.39787 * 119.58728 * 0.26717 * 9 8 7 11 11 C 1.38594 * 119.49447 * 179.97438 * 10 9 8 12 12 C 1.38389 * 118.68137 * 0.02562 * 11 10 9 13 13 C 1.40555 * 119.14744 * 359.97438 * 12 11 10 14 14 C 1.41318 * 119.78834 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99473 * 353.78340 * 14 13 12 16 16 C 1.40021 * 120.00202 * 173.77960 * 14 13 12 17 17 N 1.30739 * 120.00272 * 6.34752 * 16 14 13 18 18 Si 1.86804 * 119.99979 * 186.35174 * 16 14 13 19 19 H 1.48493 * 109.47383 * 94.98247 * 18 16 14 20 20 H 1.48496 * 109.47041 * 214.98400 * 18 16 14 21 21 H 1.48500 * 109.46800 * 334.98368 * 18 16 14 22 22 N 1.31960 * 119.58223 * 180.02562 * 9 8 7 23 23 H 1.09005 * 109.46444 * 59.99516 * 1 2 3 24 24 H 1.08990 * 109.47424 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46952 * 300.00149 * 1 2 3 26 26 H 1.09003 * 109.47072 * 179.97438 * 5 3 2 27 27 H 1.09001 * 109.47306 * 299.99598 * 5 3 2 28 28 H 1.08995 * 109.47438 * 59.99871 * 5 3 2 29 29 H 1.08993 * 109.47019 * 175.00150 * 6 3 2 30 30 H 1.08995 * 109.47047 * 54.99990 * 6 3 2 31 31 H 1.08998 * 109.47656 * 59.99653 * 7 6 3 32 32 H 1.09009 * 109.47019 * 299.99780 * 7 6 3 33 33 H 0.97005 * 119.99272 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.25814 * 359.96145 * 10 9 8 35 35 H 1.08003 * 120.66214 * 180.02562 * 11 10 9 36 36 H 1.08000 * 120.42803 * 179.97438 * 12 11 10 37 37 H 0.96998 * 120.00330 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3073 6 6 3.7371 1.9411 0.1258 7 6 4.1989 1.4190 1.4877 8 7 5.6494 1.5857 1.6085 9 6 6.2999 1.1864 2.7680 10 6 5.5632 0.6211 3.8129 11 6 6.2146 0.2226 4.9695 12 6 7.5846 0.3988 5.0544 13 6 8.2695 0.9733 3.9698 14 6 9.6686 1.1591 4.0418 15 1 10.1937 0.9541 4.9630 16 6 10.3739 1.6087 2.9189 17 7 9.7265 1.9750 1.8437 18 14 12.2400 1.6851 2.9570 19 1 12.7985 0.4409 2.3696 20 1 12.7036 2.8557 2.1696 21 1 12.7013 1.8196 4.3621 22 7 7.6065 1.3410 2.8681 23 1 -0.3632 0.5140 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9878 3.4637 -1.3072 27 1 2.2355 1.9149 -2.1492 28 1 0.6637 2.2779 -1.3969 29 1 3.9903 2.9974 0.0367 30 1 4.2340 1.3803 -0.6658 31 1 3.9456 0.3626 1.5769 32 1 3.7019 1.9798 2.2794 33 1 6.1547 1.9785 0.8795 34 1 4.4945 0.4959 3.7198 35 1 5.6641 -0.2167 5.7882 36 1 8.1207 0.0988 5.9427 37 1 10.2151 2.2861 1.0657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390435330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:09 Heat of formation + Delta-G solvation = 23.477077 kcal Electronic energy + Delta-G solvation = -17382.381250 eV Core-core repulsion = 14671.334052 eV Total energy + Delta-G solvation = -2711.047199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.24511 -36.36638 -34.12502 -33.03815 -30.47462 -29.84321 -28.88748 -27.44454 -25.28349 -23.33117 -21.84384 -21.02949 -20.22341 -17.29521 -16.70568 -16.22500 -15.29110 -14.93008 -14.69838 -14.26702 -14.19701 -14.01840 -13.63598 -13.37382 -12.94729 -12.74288 -12.56019 -12.34363 -11.88909 -11.77313 -11.33866 -11.28129 -11.10062 -10.98099 -10.93677 -10.54269 -10.36579 -9.87202 -9.85183 -9.40048 -8.81332 -7.85088 -7.73581 -7.44240 -6.43157 -6.27990 -4.41046 1.56215 2.46020 2.92599 3.14641 3.18352 3.30460 3.35837 4.02901 4.11655 4.64288 4.76744 4.89702 4.92503 4.96012 5.11636 5.32613 5.36988 5.44653 5.54658 5.59709 5.82182 5.88508 6.07907 6.22153 6.26304 6.33577 6.66685 6.93225 6.96153 7.02084 7.31033 7.67088 7.88528 7.99013 8.23471 8.43580 8.75821 8.86882 9.18978 10.30823 10.46585 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029995 B = 0.003934 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.280084 B = 7115.162071 C = 7804.004694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.250 6.250 3 C -0.052 4.052 4 H 0.089 0.911 5 C -0.147 4.147 6 C -0.112 4.112 7 C 0.140 3.860 8 N -0.740 5.740 9 C 0.411 3.589 10 C -0.365 4.365 11 C -0.032 4.032 12 C -0.317 4.317 13 C 0.293 3.707 14 C -0.437 4.437 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.717 5.717 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.262 1.262 22 N -0.532 5.532 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.394 0.606 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.197 0.890 -6.529 15.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.024 6.024 3 C -0.181 4.181 4 H 0.107 0.893 5 C -0.206 4.206 6 C -0.150 4.150 7 C 0.014 3.986 8 N -0.376 5.376 9 C 0.171 3.829 10 C -0.391 4.391 11 C -0.057 4.057 12 C -0.340 4.340 13 C 0.166 3.834 14 C -0.469 4.469 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.339 5.339 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.186 1.186 22 N -0.254 5.254 23 H 0.093 0.907 24 H 0.117 0.883 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.229 0.771 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.219 0.402 -7.344 15.127 hybrid contribution -0.448 0.787 0.447 1.010 sum -13.666 1.188 -6.896 15.353 Atomic orbital electron populations 1.23405 0.95302 1.06248 1.04615 1.87208 1.06161 1.11228 1.97816 1.23104 0.99883 0.93803 1.01337 0.89286 1.22081 1.01001 1.01102 0.96384 1.21625 0.91823 1.02609 0.98978 1.21116 0.81949 1.00580 0.94915 1.44108 1.05201 1.70778 1.17553 1.18516 0.90152 0.89152 0.85049 1.20629 0.98264 1.21983 0.98178 1.20597 0.94224 0.95519 0.95339 1.21531 0.94301 1.16304 1.01892 1.18200 0.93000 0.86598 0.85631 1.19568 0.91113 1.38314 0.97929 0.89923 1.26036 1.00296 0.93696 0.95236 1.70157 1.36434 1.25412 1.01919 0.86374 0.82907 0.78415 0.79417 1.19604 1.20294 1.18597 1.68213 1.03772 1.26965 1.26450 0.90748 0.88311 0.90637 0.91540 0.91237 0.92637 0.89967 0.90399 0.91889 0.93311 0.77145 0.89117 0.88976 0.88753 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 10.45 101.05 1.06 0.03 16 2 S -0.25 -2.93 20.60 -107.50 -2.21 -5.14 16 3 C -0.05 -0.54 2.82 -26.73 -0.08 -0.62 16 4 H 0.09 0.89 8.14 -51.92 -0.42 0.46 16 5 C -0.15 -1.23 9.10 37.16 0.34 -0.89 16 6 C -0.11 -1.39 4.80 -26.73 -0.13 -1.51 16 7 C 0.14 2.28 4.71 -4.04 -0.02 2.27 16 8 N -0.74 -15.35 5.72 -60.39 -0.35 -15.69 16 9 C 0.41 10.42 7.65 -155.33 -1.19 9.24 16 10 C -0.36 -8.79 9.34 -38.87 -0.36 -9.15 16 11 C -0.03 -0.78 10.15 -39.39 -0.40 -1.18 16 12 C -0.32 -8.29 9.83 -38.65 -0.38 -8.67 16 13 C 0.29 8.39 6.54 -85.00 -0.56 7.84 16 14 C -0.44 -12.14 9.13 -37.74 -0.34 -12.48 16 15 H 0.08 2.16 7.85 -52.49 -0.41 1.74 16 16 C 0.07 1.89 5.49 -17.35 -0.10 1.79 16 17 N -0.72 -19.45 11.48 55.55 0.64 -18.82 16 18 Si 0.90 19.10 29.56 -169.99 -5.03 14.07 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 N -0.53 -15.15 7.91 -10.33 -0.08 -15.23 16 23 H 0.07 0.51 7.14 -51.92 -0.37 0.14 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.40 6.92 -51.93 -0.36 0.05 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.10 6.91 -51.93 -0.36 0.74 16 32 H 0.05 0.80 7.92 -51.92 -0.41 0.38 16 33 H 0.39 8.06 8.59 -40.82 -0.35 7.71 16 34 H 0.09 1.97 6.68 -52.49 -0.35 1.62 16 35 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 36 H 0.09 2.29 8.06 -52.49 -0.42 1.86 16 37 H 0.27 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 320.04 15.07 4.82 4.82 Total: -1.00 -30.76 320.04 -9.91 -40.67 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.55 Total: 8.65 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.15 Total: -13.34 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.21 Total: -49.74 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -2.21 Total: -5.14 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.76 -9.91 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390435330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.149 kcal (2) G-P(sol) polarization free energy of solvation -30.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds