Wall clock time and date at job start Mon Mar 30 2020 07:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81398 * 103.00479 * 2 1 4 4 H 1.09001 * 109.46823 * 54.99973 * 3 2 1 5 5 C 1.52998 * 109.46881 * 295.00078 * 3 2 1 6 6 C 1.53001 * 109.47406 * 174.99812 * 3 2 1 7 7 C 1.52997 * 109.47019 * 295.00355 * 6 3 2 8 8 N 1.46502 * 109.47351 * 180.02562 * 7 6 3 9 9 C 1.38821 * 120.00153 * 179.72576 * 8 7 6 10 10 C 1.39787 * 119.58728 * 0.26717 * 9 8 7 11 11 C 1.38594 * 119.49447 * 179.97438 * 10 9 8 12 12 C 1.38389 * 118.68137 * 0.02562 * 11 10 9 13 13 C 1.40555 * 119.14744 * 359.97438 * 12 11 10 14 14 C 1.41318 * 119.78834 * 180.02562 * 13 12 11 15 15 H 1.07994 * 119.99473 * 353.78340 * 14 13 12 16 16 C 1.40021 * 120.00202 * 173.77960 * 14 13 12 17 17 N 1.30739 * 120.00272 * 6.34752 * 16 14 13 18 18 Si 1.86804 * 119.99979 * 186.35174 * 16 14 13 19 19 H 1.48493 * 109.47383 * 94.98247 * 18 16 14 20 20 H 1.48496 * 109.47041 * 214.98400 * 18 16 14 21 21 H 1.48500 * 109.46800 * 334.98368 * 18 16 14 22 22 N 1.31960 * 119.58223 * 180.02562 * 9 8 7 23 23 H 1.09005 * 109.46444 * 59.99516 * 1 2 3 24 24 H 1.08990 * 109.47424 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46952 * 300.00149 * 1 2 3 26 26 H 1.09003 * 109.47072 * 179.97438 * 5 3 2 27 27 H 1.09001 * 109.47306 * 299.99598 * 5 3 2 28 28 H 1.08995 * 109.47438 * 59.99871 * 5 3 2 29 29 H 1.08993 * 109.47019 * 175.00150 * 6 3 2 30 30 H 1.08995 * 109.47047 * 54.99990 * 6 3 2 31 31 H 1.08998 * 109.47656 * 59.99653 * 7 6 3 32 32 H 1.09009 * 109.47019 * 299.99780 * 7 6 3 33 33 H 0.97005 * 119.99272 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.25814 * 359.96145 * 10 9 8 35 35 H 1.08003 * 120.66214 * 180.02562 * 11 10 9 36 36 H 1.08000 * 120.42803 * 179.97438 * 12 11 10 37 37 H 0.96998 * 120.00330 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8418 5 6 1.7429 2.4015 -1.3073 6 6 3.7371 1.9411 0.1258 7 6 4.1989 1.4190 1.4877 8 7 5.6494 1.5857 1.6085 9 6 6.2999 1.1864 2.7680 10 6 5.5632 0.6211 3.8129 11 6 6.2146 0.2226 4.9695 12 6 7.5846 0.3988 5.0544 13 6 8.2695 0.9733 3.9698 14 6 9.6686 1.1591 4.0418 15 1 10.1937 0.9541 4.9630 16 6 10.3739 1.6087 2.9189 17 7 9.7265 1.9750 1.8437 18 14 12.2400 1.6851 2.9570 19 1 12.7985 0.4409 2.3696 20 1 12.7036 2.8557 2.1696 21 1 12.7013 1.8196 4.3621 22 7 7.6065 1.3410 2.8681 23 1 -0.3632 0.5140 -0.8900 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.9878 3.4637 -1.3072 27 1 2.2355 1.9149 -2.1492 28 1 0.6637 2.2779 -1.3969 29 1 3.9903 2.9974 0.0367 30 1 4.2340 1.3803 -0.6658 31 1 3.9456 0.3626 1.5769 32 1 3.7019 1.9798 2.2794 33 1 6.1547 1.9785 0.8795 34 1 4.4945 0.4959 3.7198 35 1 5.6641 -0.2167 5.7882 36 1 8.1207 0.0988 5.9427 37 1 10.2151 2.2861 1.0657 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390435330.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:09 Heat of formation + Delta-G solvation = 6.242767 kcal Electronic energy + Delta-G solvation = -17383.128586 eV Core-core repulsion = 14671.334052 eV Total energy + Delta-G solvation = -2711.794534 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13391 -37.69894 -35.68714 -34.73234 -32.32924 -31.38012 -29.85811 -28.72958 -27.24301 -24.55873 -23.44623 -22.36074 -22.05835 -19.24951 -18.05890 -17.55868 -16.68141 -16.51235 -16.23625 -15.98090 -15.18082 -15.12284 -15.06727 -14.56581 -14.38367 -14.03486 -13.79614 -13.53422 -13.43359 -12.97234 -12.74479 -12.67918 -12.59740 -12.31078 -12.25338 -12.09903 -12.00773 -11.70938 -11.26424 -10.73054 -10.59604 -9.82908 -9.44292 -8.65808 -8.27720 -8.23146 -6.47041 0.77013 1.06686 1.34649 1.42192 1.56478 1.59038 1.70472 2.26171 2.62429 2.93015 3.71686 3.83421 4.03348 4.14845 4.33693 4.35894 4.38110 4.39241 4.42410 4.60074 4.75062 4.80453 4.83424 4.94070 4.98706 5.01119 5.06739 5.08708 5.17263 5.25448 5.38820 5.72686 5.97167 6.07589 6.23926 6.56315 6.84615 6.95804 7.22921 8.34686 8.52210 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.029995 B = 0.003934 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.280084 B = 7115.162071 C = 7804.004694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.320 6.320 3 C -0.037 4.037 4 H 0.097 0.903 5 C -0.142 4.142 6 C -0.102 4.102 7 C 0.142 3.858 8 N -0.734 5.734 9 C 0.393 3.607 10 C -0.368 4.368 11 C -0.030 4.030 12 C -0.343 4.343 13 C 0.258 3.742 14 C -0.473 4.473 15 H 0.087 0.913 16 C 0.026 3.974 17 N -0.753 5.753 18 Si 0.987 3.013 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.256 1.256 22 N -0.566 5.566 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.115 0.885 35 H 0.129 0.871 36 H 0.103 0.897 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 1.362 -6.952 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.095 6.095 3 C -0.166 4.166 4 H 0.115 0.885 5 C -0.201 4.201 6 C -0.141 4.141 7 C 0.018 3.982 8 N -0.370 5.370 9 C 0.152 3.848 10 C -0.393 4.393 11 C -0.054 4.054 12 C -0.366 4.366 13 C 0.131 3.869 14 C -0.505 4.505 15 H 0.105 0.895 16 C -0.196 4.196 17 N -0.375 5.375 18 Si 0.808 3.192 19 H -0.191 1.191 20 H -0.192 1.192 21 H -0.179 1.179 22 N -0.288 5.288 23 H 0.109 0.891 24 H 0.124 0.876 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.321 0.876 -7.779 16.321 hybrid contribution -0.291 0.618 0.567 0.888 sum -14.612 1.493 -7.211 16.363 Atomic orbital electron populations 1.23427 0.91399 1.07170 1.05832 1.87452 1.10591 1.13433 1.98008 1.23041 0.98085 0.92541 1.02949 0.88459 1.22047 1.01839 1.01426 0.94754 1.21541 0.93436 1.02876 0.96198 1.21273 0.79274 1.00279 0.97403 1.44307 1.06875 1.69701 1.16091 1.18985 0.89878 0.89165 0.86752 1.20946 0.99424 1.21130 0.97838 1.21005 0.93700 0.94419 0.96295 1.21700 0.95508 1.17497 1.01937 1.18698 0.94012 0.87484 0.86677 1.19937 0.91586 1.39887 0.99063 0.89528 1.26971 1.05692 0.92635 0.94273 1.70248 1.38805 1.25771 1.02664 0.85130 0.75689 0.78702 0.79713 1.19060 1.19167 1.17918 1.68198 1.05292 1.28338 1.27012 0.89143 0.87576 0.89733 0.90344 0.91758 0.91138 0.88769 0.91122 0.92889 0.92964 0.77286 0.86752 0.85313 0.87852 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.45 113.37 1.19 -0.34 16 2 S -0.32 -7.16 20.60 -56.49 -1.16 -8.32 16 3 C -0.04 -0.70 2.82 30.59 0.09 -0.62 16 4 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 5 C -0.14 -2.01 9.10 71.98 0.66 -1.35 16 6 C -0.10 -2.41 4.80 30.59 0.15 -2.26 16 7 C 0.14 4.53 4.71 86.38 0.41 4.94 16 8 N -0.73 -30.66 5.72 -344.99 -1.97 -32.64 16 9 C 0.39 20.18 7.65 133.42 1.02 21.20 16 10 C -0.37 -17.53 9.34 22.73 0.21 -17.31 16 11 C -0.03 -1.42 10.15 22.39 0.23 -1.20 16 12 C -0.34 -18.21 9.83 22.87 0.22 -17.98 16 13 C 0.26 15.25 6.54 40.18 0.26 15.51 16 14 C -0.47 -26.97 9.13 23.46 0.21 -26.75 16 15 H 0.09 4.64 7.85 -2.91 -0.02 4.62 16 16 C 0.03 1.37 5.49 85.29 0.47 1.84 16 17 N -0.75 -41.68 11.48 21.84 0.25 -41.42 16 18 Si 0.99 39.45 29.56 68.60 2.03 41.48 16 19 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 N -0.57 -33.07 7.91 -186.59 -1.48 -34.55 16 23 H 0.09 0.97 7.14 -2.39 -0.02 0.95 16 24 H 0.11 1.32 8.14 -2.40 -0.02 1.30 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 0.81 6.92 -2.39 -0.02 0.79 16 29 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.05 1.83 6.91 -2.39 -0.02 1.81 16 32 H 0.05 1.64 7.92 -2.38 -0.02 1.62 16 33 H 0.39 16.36 8.59 -92.70 -0.80 15.56 16 34 H 0.11 4.80 6.68 -2.91 -0.02 4.78 16 35 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 36 H 0.10 5.09 8.06 -2.91 -0.02 5.07 16 37 H 0.28 13.77 8.29 -92.71 -0.77 13.00 16 Total: -1.00 -68.08 320.04 3.04 -65.04 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.26 Total: 34.74 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 5.11 Total: -24.32 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -3.20 Total: -108.61 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: -7.16 SS G_CDS: -1.16 Total: -8.32 kcal Total: -68.08 3.04 -65.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390435330.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.286 kcal (2) G-P(sol) polarization free energy of solvation -68.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds