Wall clock time and date at job start Mon Mar 30 2020 07:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81403 * 109.46638 * 2 1 4 4 C 1.76205 * 102.99745 * 179.97438 * 3 2 1 5 5 C 1.39198 * 119.70822 * 180.02562 * 4 3 2 6 6 C 1.38270 * 119.08989 * 180.02562 * 5 4 3 7 7 C 1.50703 * 120.74380 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.99869 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46835 * 325.00273 * 9 8 7 11 11 C 1.52997 * 109.46874 * 85.00270 * 9 8 7 12 12 C 1.50699 * 109.46851 * 204.99994 * 9 8 7 13 13 H 1.07998 * 120.00472 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99705 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00261 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 120.00001 * 0.02562 * 14 12 9 17 17 H 1.48495 * 109.47348 * 89.99570 * 16 14 12 18 18 H 1.48496 * 109.47246 * 210.00199 * 16 14 12 19 19 H 1.48509 * 109.46943 * 329.99773 * 16 14 12 20 20 C 1.38916 * 118.51383 * 0.25244 * 6 5 4 21 21 C 1.38034 * 119.33535 * 359.47748 * 20 6 5 22 22 N 1.31957 * 120.86156 * 0.53448 * 21 20 6 23 23 H 1.09003 * 109.47149 * 299.99727 * 1 2 3 24 24 H 1.08994 * 109.47619 * 60.00092 * 1 2 3 25 25 H 1.09007 * 109.46735 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46886 * 240.00073 * 2 1 3 27 27 H 1.08997 * 109.47150 * 119.99729 * 2 1 3 28 28 H 1.07997 * 120.45595 * 0.02661 * 5 4 3 29 29 H 1.09002 * 109.47152 * 329.99956 * 7 6 5 30 30 H 1.09001 * 109.46980 * 210.00057 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 32 32 H 1.09007 * 109.47280 * 59.99720 * 11 9 8 33 33 H 1.08997 * 109.47489 * 179.97438 * 11 9 8 34 34 H 1.09007 * 109.47004 * 300.00081 * 11 9 8 35 35 H 0.96997 * 119.99862 * 180.02562 * 15 14 12 36 36 H 1.07996 * 120.33011 * 179.72763 * 20 6 5 37 37 H 1.07996 * 119.56229 * 180.27610 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5118 0.0008 5 6 4.7070 2.6354 0.0015 6 6 6.0792 2.4648 0.0015 7 6 7.0035 3.6551 0.0017 8 7 7.3037 4.0417 1.3868 9 6 8.2049 5.2012 1.4262 10 1 8.9071 5.1440 0.5944 11 6 7.3852 6.4882 1.3140 12 6 8.9658 5.2020 2.7270 13 1 8.7972 4.4193 3.4517 14 6 9.8773 6.2021 2.9918 15 7 10.5417 6.2026 4.1268 16 14 10.1684 7.5563 1.7385 17 1 9.2337 8.6806 1.9983 18 1 11.5679 8.0405 1.8489 19 1 9.9351 7.0244 0.3717 20 6 6.5867 1.1717 -0.0045 21 6 5.7136 0.1026 0.0006 22 7 4.4081 0.2947 0.0006 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.2787 3.6268 0.0020 29 1 6.5234 4.4880 -0.5120 30 1 7.9293 3.3962 -0.5121 31 1 6.4563 4.2243 1.9031 32 1 6.6829 6.5453 2.1457 33 1 8.0537 7.3485 1.3437 34 1 6.8347 6.4875 0.3731 35 1 11.1826 6.9064 4.3132 36 1 7.6536 1.0046 -0.0091 37 1 6.1041 -0.9043 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390465190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:18 Heat of formation + Delta-G solvation = 29.718690 kcal Electronic energy + Delta-G solvation = -17215.682531 eV Core-core repulsion = 14504.905989 eV Total energy + Delta-G solvation = -2710.776542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03972 -36.56717 -33.62999 -33.01567 -31.87863 -31.24964 -29.26278 -25.51588 -24.89382 -24.37483 -22.99445 -21.82349 -20.29686 -17.54575 -16.65751 -16.49531 -16.05546 -15.38893 -15.12870 -14.98423 -14.56641 -14.24321 -14.02995 -13.63951 -12.97346 -12.73127 -12.62838 -12.43835 -12.19213 -12.05670 -11.75110 -11.69123 -11.25518 -11.01750 -10.59025 -10.50330 -10.16647 -9.87873 -9.71480 -9.60788 -9.40709 -9.20382 -8.59985 -7.63723 -7.54611 -6.07304 -4.05324 1.04288 1.25493 1.36411 2.14747 3.23128 3.32185 3.35947 3.70866 4.37265 4.49304 4.71524 4.72410 4.74147 5.05971 5.11492 5.15018 5.18634 5.22816 5.34445 5.50531 5.52541 5.61514 5.77302 5.78281 5.88891 5.98249 6.14268 6.23421 6.43902 6.46571 6.63167 6.67489 7.04714 7.63772 7.73761 7.81129 8.19116 8.64482 9.04039 9.54569 11.06199 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.003612 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.732301 B = 7750.798174 C = 8024.735371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 S -0.091 6.091 4 C 0.119 3.881 5 C -0.146 4.146 6 C -0.008 4.008 7 C 0.090 3.910 8 N -0.664 5.664 9 C 0.183 3.817 10 H 0.035 0.965 11 C -0.184 4.184 12 C -0.500 4.500 13 H 0.082 0.918 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.886 3.114 17 H -0.280 1.280 18 H -0.296 1.296 19 H -0.269 1.269 20 C -0.154 4.154 21 C 0.108 3.892 22 N -0.498 5.498 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.334 0.666 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.264 0.736 36 H 0.140 0.860 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.966 -10.529 -11.120 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.245 4.245 3 S 0.148 5.852 4 C -0.130 4.130 5 C -0.172 4.172 6 C -0.018 4.018 7 C -0.039 4.039 8 N -0.294 5.294 9 C 0.075 3.925 10 H 0.053 0.947 11 C -0.243 4.243 12 C -0.538 4.538 13 H 0.100 0.900 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.195 1.195 20 C -0.177 4.177 21 C -0.051 4.051 22 N -0.211 5.211 23 H 0.083 0.917 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.153 0.847 29 H 0.053 0.947 30 H 0.101 0.899 31 H 0.151 0.849 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -16.626 -10.666 -10.940 22.580 hybrid contribution 1.071 1.193 -0.792 1.788 sum -15.555 -9.473 -11.732 21.664 Atomic orbital electron populations 1.21572 0.92369 1.02865 1.03044 1.23344 0.99049 0.95526 1.06542 1.85519 0.95083 1.12461 1.92125 1.22819 0.98217 0.91671 1.00283 1.21540 0.93230 0.98844 1.03602 1.20333 0.93150 0.95870 0.92469 1.21001 0.97035 0.92463 0.93415 1.60694 1.18934 1.41076 1.08745 1.19677 0.90597 0.83440 0.98810 0.94675 1.22875 1.00697 1.01690 0.99044 1.20956 1.20600 1.10967 1.01301 0.89994 1.24941 0.95646 0.97675 0.95111 1.69880 1.26592 1.34059 1.23320 0.86893 0.76268 0.82686 0.82463 1.20739 1.22381 1.19476 1.22055 1.01805 0.92493 1.01300 1.22639 0.88039 0.99452 0.94947 1.67947 1.15199 1.22540 1.15421 0.91658 0.91767 0.90796 0.89256 0.89135 0.84742 0.94690 0.89934 0.84906 0.92601 0.93493 0.95444 0.92626 0.84193 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.92 37.16 0.37 -0.61 16 2 C -0.10 -0.91 5.92 37.16 0.22 -0.69 16 3 S -0.09 -1.07 21.91 -107.50 -2.36 -3.43 16 4 C 0.12 1.66 7.00 -16.93 -0.12 1.54 16 5 C -0.15 -2.05 9.54 -39.21 -0.37 -2.43 16 6 C -0.01 -0.12 5.43 -104.36 -0.57 -0.69 16 7 C 0.09 1.44 5.66 -4.98 -0.03 1.42 16 8 N -0.66 -13.11 6.22 -109.22 -0.68 -13.79 16 9 C 0.18 4.20 2.17 -68.86 -0.15 4.05 16 10 H 0.04 0.83 6.86 -51.93 -0.36 0.47 16 11 C -0.18 -3.87 8.64 37.16 0.32 -3.55 16 12 C -0.50 -13.94 9.42 -34.44 -0.32 -14.27 16 13 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 14 C 0.07 1.94 5.45 -17.82 -0.10 1.84 16 15 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 16 Si 0.89 21.64 24.37 -169.99 -4.14 17.50 16 17 H -0.28 -6.68 6.87 56.52 0.39 -6.30 16 18 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 19 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 20 C -0.15 -2.05 9.81 -39.41 -0.39 -2.44 16 21 C 0.11 1.36 11.17 -17.57 -0.20 1.17 16 22 N -0.50 -6.90 9.43 -12.11 -0.11 -7.02 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 29 H 0.04 0.53 7.39 -51.93 -0.38 0.15 16 30 H 0.08 1.30 8.01 -51.93 -0.42 0.88 16 31 H 0.33 6.36 8.47 -39.29 -0.33 6.03 16 32 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 33 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 34 H 0.03 0.49 7.45 -51.92 -0.39 0.10 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -30.71 317.35 -8.52 -39.23 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -5.45 Total: 4.07 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.33 Total: -14.65 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -0.02 Total: -47.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.50 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.36 Total: -3.43 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.71 -8.52 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390465190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.951 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds