Wall clock time and date at job start Mon Mar 30 2020 07:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81403 * 109.46638 * 2 1 4 4 C 1.76205 * 102.99745 * 179.97438 * 3 2 1 5 5 C 1.39198 * 119.70822 * 180.02562 * 4 3 2 6 6 C 1.38270 * 119.08989 * 180.02562 * 5 4 3 7 7 C 1.50703 * 120.74380 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47107 * 89.99869 * 7 6 5 9 9 C 1.46904 * 111.00029 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46835 * 325.00273 * 9 8 7 11 11 C 1.52997 * 109.46874 * 85.00270 * 9 8 7 12 12 C 1.50699 * 109.46851 * 204.99994 * 9 8 7 13 13 H 1.07998 * 120.00472 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99705 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00261 * 180.02562 * 14 12 9 16 16 Si 1.86804 * 120.00001 * 0.02562 * 14 12 9 17 17 H 1.48495 * 109.47348 * 89.99570 * 16 14 12 18 18 H 1.48496 * 109.47246 * 210.00199 * 16 14 12 19 19 H 1.48509 * 109.46943 * 329.99773 * 16 14 12 20 20 C 1.38916 * 118.51383 * 0.25244 * 6 5 4 21 21 C 1.38034 * 119.33535 * 359.47748 * 20 6 5 22 22 N 1.31957 * 120.86156 * 0.53448 * 21 20 6 23 23 H 1.09003 * 109.47149 * 299.99727 * 1 2 3 24 24 H 1.08994 * 109.47619 * 60.00092 * 1 2 3 25 25 H 1.09007 * 109.46735 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46886 * 240.00073 * 2 1 3 27 27 H 1.08997 * 109.47150 * 119.99729 * 2 1 3 28 28 H 1.07997 * 120.45595 * 0.02661 * 5 4 3 29 29 H 1.09002 * 109.47152 * 329.99956 * 7 6 5 30 30 H 1.09001 * 109.46980 * 210.00057 * 7 6 5 31 31 H 1.00902 * 111.00582 * 303.95889 * 8 7 6 32 32 H 1.09007 * 109.47280 * 59.99720 * 11 9 8 33 33 H 1.08997 * 109.47489 * 179.97438 * 11 9 8 34 34 H 1.09007 * 109.47004 * 300.00081 * 11 9 8 35 35 H 0.96997 * 119.99862 * 180.02562 * 15 14 12 36 36 H 1.07996 * 120.33011 * 179.72763 * 20 6 5 37 37 H 1.07996 * 119.56229 * 180.27610 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.8854 1.5118 0.0008 5 6 4.7070 2.6354 0.0015 6 6 6.0792 2.4648 0.0015 7 6 7.0035 3.6551 0.0017 8 7 7.3037 4.0417 1.3868 9 6 8.2049 5.2012 1.4262 10 1 8.9071 5.1440 0.5944 11 6 7.3852 6.4882 1.3140 12 6 8.9658 5.2020 2.7270 13 1 8.7972 4.4193 3.4517 14 6 9.8773 6.2021 2.9918 15 7 10.5417 6.2026 4.1268 16 14 10.1684 7.5563 1.7385 17 1 9.2337 8.6806 1.9983 18 1 11.5679 8.0405 1.8489 19 1 9.9351 7.0244 0.3717 20 6 6.5867 1.1717 -0.0045 21 6 5.7136 0.1026 0.0006 22 7 4.4081 0.2947 0.0006 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 4.2787 3.6268 0.0020 29 1 6.5234 4.4880 -0.5120 30 1 7.9293 3.3962 -0.5121 31 1 6.4563 4.2243 1.9031 32 1 6.6829 6.5453 2.1457 33 1 8.0537 7.3485 1.3437 34 1 6.8347 6.4875 0.3731 35 1 11.1826 6.9064 4.3132 36 1 7.6536 1.0046 -0.0091 37 1 6.1041 -0.9043 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390465190.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:18 Heat of formation + Delta-G solvation = 9.243420 kcal Electronic energy + Delta-G solvation = -17216.570405 eV Core-core repulsion = 14504.905989 eV Total energy + Delta-G solvation = -2711.664416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08498 -38.14238 -35.15620 -33.85429 -33.54176 -32.26107 -30.82654 -27.19972 -26.53485 -25.24051 -23.82024 -22.98178 -22.10909 -19.02920 -18.20890 -17.60720 -17.09755 -16.89619 -16.25806 -16.06275 -15.81680 -15.52552 -15.18500 -14.89375 -14.64217 -14.35184 -13.83825 -13.67254 -13.37088 -13.23983 -13.02302 -12.81375 -12.44869 -12.38085 -12.24441 -12.00633 -11.50226 -11.34855 -11.24824 -10.85947 -10.76608 -10.65238 -10.60823 -9.10333 -8.57217 -8.26811 -6.29966 0.00665 0.18628 0.45353 1.29256 1.31097 1.36360 1.46698 2.32669 2.65401 3.07413 3.42451 3.64206 3.76694 4.02381 4.03019 4.05257 4.13980 4.23659 4.43350 4.52655 4.54426 4.57675 4.62296 4.70146 4.78780 4.90157 4.90406 4.91135 4.96682 5.22092 5.35473 5.40523 5.61416 5.65700 5.97109 6.63195 6.64177 6.72033 6.77736 7.35033 8.90754 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.003612 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.732301 B = 7750.798174 C = 8024.735371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 S -0.098 6.098 4 C 0.104 3.896 5 C -0.153 4.153 6 C -0.020 4.020 7 C 0.096 3.904 8 N -0.678 5.678 9 C 0.189 3.811 10 H 0.035 0.965 11 C -0.179 4.179 12 C -0.506 4.506 13 H 0.033 0.967 14 C 0.008 3.992 15 N -0.952 5.952 16 Si 0.954 3.046 17 H -0.268 1.268 18 H -0.300 1.300 19 H -0.245 1.245 20 C -0.161 4.161 21 C 0.108 3.892 22 N -0.507 5.507 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.336 0.664 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.063 0.937 35 H 0.265 0.735 36 H 0.150 0.850 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.386 -10.577 -13.277 24.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.238 4.238 3 S 0.141 5.859 4 C -0.144 4.144 5 C -0.180 4.180 6 C -0.030 4.030 7 C -0.033 4.033 8 N -0.308 5.308 9 C 0.079 3.921 10 H 0.053 0.947 11 C -0.238 4.238 12 C -0.544 4.544 13 H 0.052 0.948 14 C -0.189 4.189 15 N -0.593 5.593 16 Si 0.781 3.219 17 H -0.194 1.194 18 H -0.228 1.228 19 H -0.169 1.169 20 C -0.184 4.184 21 C -0.051 4.051 22 N -0.221 5.221 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.153 0.847 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.167 0.833 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -18.080 -10.728 -13.118 24.780 hybrid contribution 1.440 1.039 -0.068 1.777 sum -16.640 -9.689 -13.186 23.338 Atomic orbital electron populations 1.21591 0.90365 1.04214 1.03267 1.23430 1.00573 0.93590 1.06184 1.85514 0.93813 1.14743 1.91782 1.23127 0.99410 0.91722 1.00123 1.21656 0.93174 0.99398 1.03732 1.20258 0.93217 0.95817 0.93702 1.20970 0.97703 0.93508 0.91094 1.60493 1.18982 1.39824 1.11519 1.19432 0.91176 0.85801 0.95658 0.94664 1.22744 1.00420 0.99629 1.01021 1.21266 1.21211 1.09392 1.02556 0.94829 1.25839 0.95356 1.00539 0.97162 1.70051 1.27907 1.35462 1.25911 0.85791 0.75972 0.79479 0.80687 1.19394 1.22807 1.16916 1.22249 1.02538 0.92396 1.01194 1.23133 0.87599 1.00674 0.93683 1.68019 1.15807 1.22573 1.15669 0.91616 0.91350 0.88809 0.89317 0.89713 0.84009 0.93223 0.89723 0.84677 0.92739 0.94415 0.91824 0.92590 0.83273 0.79620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.92 71.98 0.71 -0.89 16 2 C -0.09 -1.54 5.92 71.98 0.43 -1.12 16 3 S -0.10 -2.18 21.91 -56.49 -1.24 -3.42 16 4 C 0.10 2.79 7.00 84.83 0.59 3.38 16 5 C -0.15 -4.13 9.54 22.51 0.21 -3.91 16 6 C -0.02 -0.56 5.43 -19.69 -0.11 -0.67 16 7 C 0.10 2.90 5.66 85.56 0.48 3.38 16 8 N -0.68 -26.19 6.22 -499.46 -3.11 -29.30 16 9 C 0.19 8.42 2.17 44.17 0.10 8.52 16 10 H 0.04 1.59 6.86 -2.39 -0.02 1.57 16 11 C -0.18 -7.05 8.64 71.98 0.62 -6.43 16 12 C -0.51 -28.76 9.42 25.60 0.24 -28.52 16 13 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 14 C 0.01 0.44 5.45 84.65 0.46 0.90 16 15 N -0.95 -59.86 13.96 21.45 0.30 -59.57 16 16 Si 0.95 44.14 24.37 68.60 1.67 45.82 16 17 H -0.27 -11.79 6.87 99.48 0.68 -11.11 16 18 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.25 -10.31 6.53 99.48 0.65 -9.66 16 20 C -0.16 -4.08 9.81 22.38 0.22 -3.86 16 21 C 0.11 2.53 11.17 84.63 0.95 3.48 16 22 N -0.51 -13.34 9.43 -192.22 -1.81 -15.16 16 23 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 29 H 0.05 1.36 7.39 -2.39 -0.02 1.34 16 30 H 0.08 2.50 8.01 -2.39 -0.02 2.48 16 31 H 0.34 12.61 8.47 -89.69 -0.76 11.85 16 32 H 0.05 2.13 8.13 -2.38 -0.02 2.11 16 33 H 0.04 1.55 3.27 -2.39 -0.01 1.54 16 34 H 0.06 2.04 7.45 -2.38 -0.02 2.02 16 35 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.19 3.07 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -67.20 317.35 0.95 -66.25 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.22 Total: 21.11 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.91 Total: -25.74 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -4.62 Total: -104.02 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.82 kcal Atomic # 16 Polarization: -2.18 SS G_CDS: -1.24 Total: -3.42 kcal Total: -67.20 0.95 -66.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390465190.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.496 kcal (2) G-P(sol) polarization free energy of solvation -67.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds