Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91641 * 2 1 4 4 C 1.31791 * 117.12054 * 179.81644 * 3 2 1 5 5 C 1.33641 * 114.50066 * 0.46688 * 4 3 2 6 6 C 1.50699 * 126.03528 * 179.79139 * 5 4 3 7 7 N 1.46895 * 109.47071 * 89.98847 * 6 5 4 8 8 C 1.46893 * 111.00348 * 179.97438 * 7 6 5 9 9 H 1.09007 * 110.67207 * 31.76004 * 8 7 6 10 10 C 1.54889 * 110.75554 * 268.32863 * 8 7 6 11 11 C 1.54272 * 104.19564 * 203.73898 * 10 8 7 12 12 C 1.53874 * 106.59806 * 23.60753 * 11 10 8 13 13 H 1.08997 * 110.07009 * 240.69237 * 12 11 10 14 14 C 1.50703 * 110.02836 * 119.28387 * 12 11 10 15 15 H 1.07998 * 120.00103 * 242.82847 * 14 12 11 16 16 C 1.37873 * 119.99815 * 62.83595 * 14 12 11 17 17 N 1.31513 * 120.00642 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 119.99867 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46750 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47091 * 119.99837 * 18 16 14 21 21 H 1.48501 * 109.46882 * 239.99902 * 18 16 14 22 22 C 1.54268 * 106.59746 * 359.97438 * 12 11 10 23 23 S 1.70982 * 124.91206 * 180.30300 * 2 1 3 24 24 H 1.08999 * 109.47015 * 269.70026 * 1 2 3 25 25 H 1.09000 * 109.46646 * 29.69179 * 1 2 3 26 26 H 1.09000 * 109.47248 * 149.69896 * 1 2 3 27 27 H 1.08001 * 122.74460 * 180.22429 * 4 3 2 28 28 H 1.09004 * 109.47016 * 209.98372 * 6 5 4 29 29 H 1.08996 * 109.47365 * 329.98436 * 6 5 4 30 30 H 1.00899 * 111.00360 * 56.04185 * 7 6 5 31 31 H 1.09002 * 110.48937 * 322.41649 * 10 8 7 32 32 H 1.09000 * 110.48712 * 85.05912 * 10 8 7 33 33 H 1.09001 * 110.02963 * 264.31872 * 11 10 8 34 34 H 1.09001 * 110.03115 * 142.89721 * 11 10 8 35 35 H 0.97000 * 120.00427 * 180.02562 * 17 16 14 36 36 H 1.09001 * 110.48651 * 217.70929 * 22 12 11 37 37 H 1.09001 * 110.48398 * 95.06995 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 0.0038 5 6 3.9354 -0.4008 -0.0028 6 6 5.3575 -0.8996 -0.0050 7 7 5.8193 -1.0686 1.3792 8 6 7.2047 -1.5554 1.4163 9 1 7.7675 -1.1799 0.5616 10 6 7.2416 -3.1031 1.4657 11 6 8.6096 -3.4289 2.0999 12 6 9.0232 -2.1900 2.9133 13 1 9.9597 -1.7857 2.5291 14 6 9.1769 -2.5549 4.3674 15 1 8.5369 -2.1001 5.1089 16 6 10.1347 -3.4695 4.7510 17 7 10.9139 -4.0237 3.8481 18 14 10.3257 -3.9214 6.5536 19 1 9.3363 -3.1638 7.3612 20 1 10.0947 -5.3781 6.7258 21 1 11.6984 -3.5809 7.0064 22 6 7.8924 -1.1543 2.7445 23 16 2.4856 -1.4021 -0.0074 24 1 -0.3633 -0.0054 1.0276 25 1 -0.3632 0.8928 -0.5091 26 1 -0.3634 -0.8873 -0.5185 27 1 4.2533 1.7000 0.0077 28 1 5.4058 -1.8572 -0.5236 29 1 5.9950 -0.1776 -0.5152 30 1 5.2062 -1.6841 1.8923 31 1 6.4320 -3.4843 2.0881 32 1 7.1787 -3.5185 0.4599 33 1 9.3451 -3.6262 1.3200 34 1 8.5201 -4.2941 2.7567 35 1 11.5875 -4.6674 4.1180 36 1 8.3046 -0.1478 2.6725 37 1 7.1877 -1.2205 3.5734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393484197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = 25.431693 kcal Electronic energy + Delta-G solvation = -17372.357633 eV Core-core repulsion = 14661.395193 eV Total energy + Delta-G solvation = -2710.962440 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79028 -37.90930 -34.90121 -32.63351 -31.66733 -29.21221 -28.00331 -26.46749 -24.62157 -23.59301 -22.91445 -20.08791 -19.31524 -18.86222 -18.06659 -16.28995 -15.81355 -15.26215 -14.82189 -14.66179 -14.29871 -14.09529 -13.70477 -13.60648 -12.93413 -12.68740 -12.47388 -12.35635 -12.01679 -11.55151 -11.45858 -11.05768 -10.92511 -10.64057 -10.46051 -10.26905 -9.84609 -9.74751 -9.61938 -9.40097 -9.16847 -8.85597 -8.65948 -8.35421 -8.02803 -5.97994 -4.00474 0.58399 1.20388 1.62951 2.74157 3.30953 3.39216 3.43534 4.01773 4.43532 4.51838 4.83344 4.87637 5.09626 5.15940 5.21224 5.33589 5.48207 5.57687 5.60245 5.62430 5.78232 5.88434 6.10633 6.19577 6.47730 6.62709 6.71401 6.82920 7.04630 7.11065 7.37554 7.45340 7.59774 7.63374 7.75519 7.95382 8.03131 8.51814 9.03774 9.63367 11.11383 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039313 B = 0.003433 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.067478 B = 8154.047787 C = 8310.187042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.038 3.962 3 N -0.475 5.475 4 C 0.049 3.951 5 C -0.208 4.208 6 C 0.135 3.865 7 N -0.677 5.677 8 C 0.079 3.921 9 H 0.075 0.925 10 C -0.152 4.152 11 C -0.088 4.088 12 C 0.043 3.957 13 H 0.026 0.974 14 C -0.509 4.509 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.891 5.891 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.098 4.098 23 S 0.112 5.888 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.176 0.824 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.340 0.660 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.062 0.938 35 H 0.258 0.742 36 H 0.046 0.954 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.339 4.705 -10.110 20.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.239 4.239 3 N -0.190 5.190 4 C -0.102 4.102 5 C -0.329 4.329 6 C 0.003 3.997 7 N -0.307 5.307 8 C -0.030 4.030 9 H 0.093 0.907 10 C -0.191 4.191 11 C -0.127 4.127 12 C 0.024 3.976 13 H 0.045 0.955 14 C -0.547 4.547 15 H 0.074 0.926 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.715 3.285 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.136 4.136 23 S 0.365 5.635 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.193 0.807 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.495 4.701 -10.068 20.726 hybrid contribution 0.747 -0.623 0.738 1.221 sum -16.748 4.078 -9.331 19.601 Atomic orbital electron populations 1.20419 0.85388 1.03994 1.03838 1.26986 1.01682 0.91107 1.04163 1.66292 1.05078 1.31597 1.16028 1.21692 0.90747 0.96056 1.01663 1.25974 0.99496 0.96140 1.11303 1.20308 0.87696 0.99662 0.92021 1.60720 1.04084 1.55027 1.10913 1.22743 0.86993 0.93308 0.99963 0.90683 1.23090 1.00954 0.96091 0.98958 1.21988 0.91660 1.01270 0.97780 1.19264 0.92704 0.90229 0.95406 0.95538 1.21312 1.17315 1.23672 0.92412 0.92641 1.24993 0.95787 0.96344 0.97093 1.69991 1.21123 1.29114 1.32734 0.86612 0.77898 0.78139 0.85826 1.19782 1.21159 1.21115 1.22423 0.98065 0.98784 0.94319 1.84011 0.98223 1.12580 1.68647 0.89650 0.89414 0.90255 0.80655 0.94098 0.88992 0.84182 0.92640 0.93972 0.94449 0.91909 0.93230 0.93531 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.16 16 2 C 0.04 0.42 7.39 -13.46 -0.10 0.32 16 3 N -0.48 -6.15 10.54 -11.86 -0.13 -6.27 16 4 C 0.05 0.62 11.25 -19.18 -0.22 0.40 16 5 C -0.21 -2.52 6.11 -35.92 -0.22 -2.74 16 6 C 0.13 1.67 6.08 -4.98 -0.03 1.64 16 7 N -0.68 -10.08 6.38 -105.91 -0.68 -10.75 16 8 C 0.08 1.36 3.23 -65.74 -0.21 1.15 16 9 H 0.07 1.25 7.83 -51.93 -0.41 0.84 16 10 C -0.15 -2.77 6.41 -25.07 -0.16 -2.93 16 11 C -0.09 -2.03 5.60 -25.61 -0.14 -2.17 16 12 C 0.04 1.06 2.82 -90.65 -0.26 0.80 16 13 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 14 C -0.51 -13.96 8.32 -34.44 -0.29 -14.25 16 15 H 0.06 1.52 7.54 -52.49 -0.40 1.12 16 16 C 0.06 1.64 5.09 -17.82 -0.09 1.55 16 17 N -0.89 -25.68 12.44 55.43 0.69 -24.99 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.10 -2.02 6.03 -25.09 -0.15 -2.17 16 23 S 0.11 1.18 23.18 -107.50 -2.49 -1.31 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 1.08 8.08 -51.93 -0.42 0.66 16 30 H 0.34 5.06 8.20 -39.29 -0.32 4.74 16 31 H 0.05 1.00 7.77 -51.93 -0.40 0.59 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 1.61 7.26 -51.93 -0.38 1.23 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 LS Contribution 318.05 15.07 4.79 4.79 Total: -1.00 -29.53 318.05 -9.98 -39.52 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.66 Total: 1.21 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -1.49 Total: -18.55 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.11 Total: -42.02 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -2.49 Total: -1.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.53 -9.98 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393484197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.948 kcal (2) G-P(sol) polarization free energy of solvation -29.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds