Wall clock time and date at job start Mon Mar 30 2020 06:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29022 * 124.91641 * 2 1 4 4 C 1.31791 * 117.12054 * 179.81644 * 3 2 1 5 5 C 1.33641 * 114.50066 * 0.46688 * 4 3 2 6 6 C 1.50699 * 126.03528 * 179.79139 * 5 4 3 7 7 N 1.46895 * 109.47071 * 89.98847 * 6 5 4 8 8 C 1.46893 * 111.00348 * 179.97438 * 7 6 5 9 9 H 1.09007 * 110.67207 * 31.76004 * 8 7 6 10 10 C 1.54889 * 110.75554 * 268.32863 * 8 7 6 11 11 C 1.54272 * 104.19564 * 203.73898 * 10 8 7 12 12 C 1.53874 * 106.59806 * 23.60753 * 11 10 8 13 13 H 1.08997 * 110.07009 * 240.69237 * 12 11 10 14 14 C 1.50703 * 110.02836 * 119.28387 * 12 11 10 15 15 H 1.07998 * 120.00103 * 242.82847 * 14 12 11 16 16 C 1.37873 * 119.99815 * 62.83595 * 14 12 11 17 17 N 1.31513 * 120.00642 * 359.97438 * 16 14 12 18 18 Si 1.86809 * 119.99867 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46750 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47091 * 119.99837 * 18 16 14 21 21 H 1.48501 * 109.46882 * 239.99902 * 18 16 14 22 22 C 1.54268 * 106.59746 * 359.97438 * 12 11 10 23 23 S 1.70982 * 124.91206 * 180.30300 * 2 1 3 24 24 H 1.08999 * 109.47015 * 269.70026 * 1 2 3 25 25 H 1.09000 * 109.46646 * 29.69179 * 1 2 3 26 26 H 1.09000 * 109.47248 * 149.69896 * 1 2 3 27 27 H 1.08001 * 122.74460 * 180.22429 * 4 3 2 28 28 H 1.09004 * 109.47016 * 209.98372 * 6 5 4 29 29 H 1.08996 * 109.47365 * 329.98436 * 6 5 4 30 30 H 1.00899 * 111.00360 * 56.04185 * 7 6 5 31 31 H 1.09002 * 110.48937 * 322.41649 * 10 8 7 32 32 H 1.09000 * 110.48712 * 85.05912 * 10 8 7 33 33 H 1.09001 * 110.02963 * 264.31872 * 11 10 8 34 34 H 1.09001 * 110.03115 * 142.89721 * 11 10 8 35 35 H 0.97000 * 120.00427 * 180.02562 * 17 16 14 36 36 H 1.09001 * 110.48651 * 217.70929 * 22 12 11 37 37 H 1.09001 * 110.48398 * 95.06995 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5513 0.8792 0.0038 5 6 3.9354 -0.4008 -0.0028 6 6 5.3575 -0.8996 -0.0050 7 7 5.8193 -1.0686 1.3792 8 6 7.2047 -1.5554 1.4163 9 1 7.7675 -1.1799 0.5616 10 6 7.2416 -3.1031 1.4657 11 6 8.6096 -3.4289 2.0999 12 6 9.0232 -2.1900 2.9133 13 1 9.9597 -1.7857 2.5291 14 6 9.1769 -2.5549 4.3674 15 1 8.5369 -2.1001 5.1089 16 6 10.1347 -3.4695 4.7510 17 7 10.9139 -4.0237 3.8481 18 14 10.3257 -3.9214 6.5536 19 1 9.3363 -3.1638 7.3612 20 1 10.0947 -5.3781 6.7258 21 1 11.6984 -3.5809 7.0064 22 6 7.8924 -1.1543 2.7445 23 16 2.4856 -1.4021 -0.0074 24 1 -0.3633 -0.0054 1.0276 25 1 -0.3632 0.8928 -0.5091 26 1 -0.3634 -0.8873 -0.5185 27 1 4.2533 1.7000 0.0077 28 1 5.4058 -1.8572 -0.5236 29 1 5.9950 -0.1776 -0.5152 30 1 5.2062 -1.6841 1.8923 31 1 6.4320 -3.4843 2.0881 32 1 7.1787 -3.5185 0.4599 33 1 9.3451 -3.6262 1.3200 34 1 8.5201 -4.2941 2.7567 35 1 11.5875 -4.6674 4.1180 36 1 8.3046 -0.1478 2.6725 37 1 7.1877 -1.2205 3.5734 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393484197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:03 Heat of formation + Delta-G solvation = 7.195438 kcal Electronic energy + Delta-G solvation = -17373.148417 eV Core-core repulsion = 14661.395193 eV Total energy + Delta-G solvation = -2711.753224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.66822 -39.43399 -36.29440 -34.29645 -32.81254 -30.34233 -29.71726 -27.94812 -25.93508 -25.02182 -23.98156 -21.46812 -20.79568 -20.23152 -18.92467 -18.29795 -16.99643 -16.68302 -16.26966 -15.93622 -15.57295 -15.29945 -14.75410 -14.57933 -14.29275 -14.00565 -13.56604 -13.48168 -13.23835 -13.00681 -12.90739 -12.70286 -12.46859 -12.30028 -12.08244 -11.91524 -11.60541 -11.42797 -11.03366 -10.69994 -10.60150 -10.45838 -10.26276 -9.71436 -9.26289 -8.11449 -6.20663 -0.26602 0.38613 0.78138 1.38945 1.41088 1.52460 1.85256 2.43563 3.18837 3.24232 3.34441 3.86307 4.00658 4.07356 4.17317 4.25855 4.28447 4.63220 4.64739 4.68262 4.68985 4.86077 4.88473 5.00175 5.04457 5.04828 5.16609 5.25215 5.28625 5.43914 5.48695 5.67951 5.94627 5.97109 6.15116 6.38313 6.45230 6.78190 6.92213 7.46607 8.97479 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039313 B = 0.003433 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.067478 B = 8154.047787 C = 8310.187042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.506 5.506 4 C 0.041 3.959 5 C -0.225 4.225 6 C 0.139 3.861 7 N -0.678 5.678 8 C 0.097 3.903 9 H 0.086 0.914 10 C -0.139 4.139 11 C -0.081 4.081 12 C 0.034 3.966 13 H -0.007 1.007 14 C -0.527 4.527 15 H 0.051 0.949 16 C 0.009 3.991 17 N -0.920 5.920 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.282 1.282 22 C -0.091 4.091 23 S 0.135 5.865 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.181 0.819 28 H 0.050 0.950 29 H 0.100 0.900 30 H 0.341 0.659 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.029 0.971 35 H 0.259 0.741 36 H 0.048 0.952 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.283 4.671 -10.465 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.239 4.239 3 N -0.222 5.222 4 C -0.110 4.110 5 C -0.346 4.346 6 C 0.008 3.992 7 N -0.308 5.308 8 C -0.012 4.012 9 H 0.105 0.895 10 C -0.178 4.178 11 C -0.120 4.120 12 C 0.015 3.985 13 H 0.012 0.988 14 C -0.565 4.565 15 H 0.069 0.931 16 C -0.189 4.189 17 N -0.560 5.560 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.129 4.129 23 S 0.389 5.611 24 H 0.115 0.885 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.198 0.802 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.160 0.840 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.459 4.671 -10.428 22.566 hybrid contribution 1.307 -0.593 0.836 1.661 sum -18.152 4.077 -9.592 20.931 Atomic orbital electron populations 1.20623 0.82913 1.05331 1.04983 1.27665 1.03233 0.90803 1.02217 1.66348 1.05406 1.32715 1.17722 1.21875 0.91043 0.96564 1.01528 1.25928 0.99856 0.96433 1.12392 1.20301 0.88132 1.00383 0.90387 1.60597 1.02762 1.54656 1.12821 1.22433 0.88422 0.92228 0.98158 0.89541 1.22976 0.97794 0.97126 0.99886 1.21771 0.94346 0.99132 0.96753 1.19269 0.92849 0.92084 0.94262 0.98831 1.21666 1.17314 1.23680 0.93836 0.93112 1.25756 0.95583 0.96362 1.01223 1.70107 1.21655 1.29640 1.34611 0.85614 0.77897 0.77929 0.80896 1.19147 1.20628 1.20746 1.22249 0.96774 0.97639 0.96241 1.83891 0.97219 1.11874 1.68076 0.88456 0.88930 0.88061 0.80215 0.93188 0.88178 0.84027 0.92125 0.91460 0.95725 0.95207 0.93202 0.93293 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.46 71.24 0.75 -0.15 16 2 C 0.04 0.75 7.39 88.52 0.65 1.40 16 3 N -0.51 -12.39 10.54 -191.43 -2.02 -14.40 16 4 C 0.04 0.97 11.25 83.66 0.94 1.91 16 5 C -0.22 -5.01 6.11 24.64 0.15 -4.86 16 6 C 0.14 3.11 6.08 85.56 0.52 3.63 16 7 N -0.68 -18.74 6.38 -489.00 -3.12 -21.85 16 8 C 0.10 3.19 3.23 46.20 0.15 3.34 16 9 H 0.09 2.68 7.83 -2.38 -0.02 2.66 16 10 C -0.14 -4.85 6.41 31.67 0.20 -4.65 16 11 C -0.08 -3.79 5.60 31.32 0.18 -3.61 16 12 C 0.03 1.73 2.82 -10.81 -0.03 1.70 16 13 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 14 C -0.53 -29.49 8.32 25.60 0.21 -29.27 16 15 H 0.05 2.82 7.54 -2.91 -0.02 2.79 16 16 C 0.01 0.51 5.09 84.65 0.43 0.94 16 17 N -0.92 -54.27 12.44 21.45 0.27 -54.00 16 18 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 C -0.09 -3.72 6.03 31.66 0.19 -3.53 16 23 S 0.14 2.55 23.18 -56.49 -1.31 1.24 16 24 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.18 3.85 8.06 -2.91 -0.02 3.83 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 2.09 8.08 -2.39 -0.02 2.07 16 30 H 0.34 9.40 8.20 -89.69 -0.74 8.67 16 31 H 0.06 2.07 7.77 -2.39 -0.02 2.05 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.03 1.55 7.26 -2.39 -0.02 1.53 16 35 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 36 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.05 2.16 7.68 -2.39 -0.02 2.14 16 Total: -1.00 -64.18 318.05 0.51 -63.67 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.32 Total: 12.17 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 4.34 Total: -33.15 kcal Atomic # 7 Polarization: -85.39 SS G_CDS: -4.87 Total: -90.26 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.24 kcal Total: -64.18 0.51 -63.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393484197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.865 kcal (2) G-P(sol) polarization free energy of solvation -64.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds