Wall clock time and date at job start Mon Mar 30 2020 06:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32128 * 122.70859 * 2 1 4 4 C 1.29688 * 116.86407 * 180.02562 * 3 2 1 5 5 N 1.38616 * 124.94884 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00235 * 180.02562 * 5 4 3 7 7 H 1.09004 * 110.05651 * 326.42194 * 6 5 4 8 8 C 1.54268 * 110.03236 * 87.83418 * 6 5 4 9 9 C 1.55022 * 104.27752 * 142.80183 * 8 6 5 10 10 C 1.54885 * 102.68779 * 322.23443 * 9 8 6 11 11 H 1.08998 * 110.48656 * 279.02879 * 10 9 8 12 12 C 1.50706 * 110.48779 * 156.51451 * 10 9 8 13 13 H 1.07995 * 120.00167 * 242.96745 * 12 10 9 14 14 C 1.37879 * 119.99394 * 63.24444 * 12 10 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.53874 * 110.03358 * 205.00348 * 6 5 4 21 21 S 1.70971 * 110.10351 * 0.24677 * 4 3 2 22 22 C 1.33328 * 122.71335 * 180.02562 * 2 1 3 23 23 C 1.50697 * 125.94862 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47305 * 89.97532 * 1 2 3 25 25 H 1.08994 * 109.47062 * 209.97287 * 1 2 3 26 26 H 1.08996 * 109.47717 * 329.97790 * 1 2 3 27 27 H 0.96998 * 119.99572 * 0.02562 * 5 4 3 28 28 H 1.09000 * 110.48571 * 261.57475 * 8 6 5 29 29 H 1.08998 * 110.48417 * 24.21927 * 8 6 5 30 30 H 1.09007 * 110.87568 * 203.89922 * 9 8 6 31 31 H 1.09009 * 110.69873 * 80.48969 * 9 8 6 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 33 33 H 1.09005 * 110.02922 * 121.43027 * 20 6 5 34 34 H 1.08998 * 110.06854 * 0.02562 * 20 6 5 35 35 H 1.09000 * 109.47114 * 90.00831 * 23 22 2 36 36 H 1.09004 * 109.47361 * 209.99795 * 23 22 2 37 37 H 1.08997 * 109.47465 * 330.00364 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2209 1.1118 0.0000 4 6 3.5110 0.9797 -0.0005 5 7 4.4167 2.0291 -0.0011 6 6 5.8557 1.7549 -0.0022 7 1 6.0636 0.8468 0.5638 8 6 6.3635 1.6022 -1.4509 9 6 7.7668 2.2607 -1.4356 10 6 7.5643 3.4711 -0.4907 11 1 7.1012 4.2998 -1.0262 12 6 8.8799 3.9000 0.1064 13 1 9.0323 3.8435 1.1741 14 6 9.8868 4.3700 -0.7099 15 7 9.6990 4.4445 -2.0094 16 14 11.5177 4.9010 0.0302 17 1 11.4748 4.7210 1.5035 18 1 12.6120 4.0737 -0.5384 19 1 11.7626 6.3311 -0.2864 20 6 6.6193 2.9431 0.6083 21 16 3.9321 -0.6773 -0.0080 22 6 2.2275 -1.1218 -0.0005 23 6 1.6791 -2.5255 -0.0006 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5141 27 1 4.0975 2.9451 -0.0008 28 1 6.4385 0.5486 -1.7198 29 1 5.7055 2.1277 -2.1431 30 1 8.0508 2.5933 -2.4341 31 1 8.5101 1.5741 -1.0300 32 1 10.4073 4.7755 -2.5836 33 1 7.1977 2.6117 1.4707 34 1 5.9196 3.7240 0.9061 35 1 1.5467 -2.8637 -1.0283 36 1 2.3761 -3.1879 0.5128 37 1 0.7181 -2.5402 0.5135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393510597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:07 Heat of formation + Delta-G solvation = 22.865905 kcal Electronic energy + Delta-G solvation = -17641.636840 eV Core-core repulsion = 14930.563139 eV Total energy + Delta-G solvation = -2711.073701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.65802 -38.01460 -34.74902 -32.64756 -31.52615 -29.53240 -28.30298 -27.04135 -24.87948 -23.88469 -23.08557 -20.16465 -19.51334 -18.66861 -17.76185 -16.64478 -16.12728 -15.12406 -15.07936 -14.59693 -13.91601 -13.77700 -13.40149 -13.02080 -12.98246 -12.77886 -12.67417 -12.50714 -12.00001 -11.88155 -11.33782 -11.09172 -10.88330 -10.79749 -10.65318 -10.34523 -10.16466 -9.68988 -9.54505 -9.39510 -9.31087 -8.90786 -8.85082 -8.42163 -7.36638 -6.06034 -4.09492 1.20112 1.38048 1.99739 3.09967 3.26657 3.28581 3.35329 3.38690 4.39949 4.76718 5.10878 5.17192 5.20215 5.28257 5.38568 5.44998 5.48315 5.61181 5.64568 5.78812 5.81553 6.00353 6.10710 6.24347 6.38238 6.45863 6.51452 6.60687 6.83810 6.96376 7.15555 7.27374 7.60666 7.65535 7.78960 7.95537 8.19094 8.36558 8.93012 9.55216 11.03185 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.052471 B = 0.003768 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.499881 B = 7429.327680 C = 7570.700568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.111 3.889 3 N -0.565 5.565 4 C 0.332 3.668 5 N -0.679 5.679 6 C 0.142 3.858 7 H 0.074 0.926 8 C -0.143 4.143 9 C -0.098 4.098 10 C 0.049 3.951 11 H 0.032 0.968 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.888 5.888 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C -0.120 4.120 21 S 0.089 5.911 22 C -0.293 4.293 23 C -0.059 4.059 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.410 0.590 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.908 -11.268 2.934 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.021 4.021 3 N -0.292 5.292 4 C -0.040 4.040 5 N -0.318 5.318 6 C 0.038 3.962 7 H 0.092 0.908 8 C -0.182 4.182 9 C -0.136 4.136 10 C 0.030 3.970 11 H 0.050 0.950 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.527 5.527 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.158 4.158 21 S 0.337 5.663 22 C -0.416 4.416 23 C -0.118 4.118 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.248 0.752 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.848 -11.243 2.778 17.297 hybrid contribution 0.023 0.806 0.275 0.852 sum -12.826 -10.436 3.053 16.815 Atomic orbital electron populations 1.20326 0.87909 1.02799 1.02516 1.19685 0.97187 0.85972 0.99222 1.66309 1.02449 1.31426 1.29019 1.23523 0.90351 0.93260 0.96822 1.44690 1.03832 1.05349 1.77898 1.22109 0.76335 0.99884 0.97837 0.90842 1.23019 1.00272 1.00099 0.94856 1.22460 0.91554 0.97487 1.02112 1.19457 0.93332 0.93413 0.90771 0.95008 1.21201 0.97948 1.42871 0.93388 0.92515 1.24979 0.98628 0.95438 0.94861 1.69960 1.33175 1.46453 1.03072 0.86577 0.83992 0.78263 0.79411 1.19789 1.21027 1.21081 1.22578 0.97857 0.94674 1.00672 1.83931 1.07491 0.99897 1.74982 1.24950 0.94090 1.00302 1.22231 1.20009 1.00271 0.89635 1.01897 0.90932 0.90966 0.90990 0.75196 0.92872 0.91915 0.90900 0.93001 0.93067 0.91259 0.92743 0.91661 0.91973 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.05 36.00 0.36 -0.42 16 2 C 0.11 1.57 6.74 -84.18 -0.57 1.00 16 3 N -0.57 -9.36 10.59 -11.36 -0.12 -9.48 16 4 C 0.33 5.40 8.24 -87.67 -0.72 4.68 16 5 N -0.68 -10.94 5.19 -54.69 -0.28 -11.22 16 6 C 0.14 2.42 3.20 -66.81 -0.21 2.21 16 7 H 0.07 1.20 7.24 -51.93 -0.38 0.83 16 8 C -0.14 -2.60 6.53 -25.00 -0.16 -2.76 16 9 C -0.10 -2.15 5.69 -24.67 -0.14 -2.29 16 10 C 0.05 1.15 2.75 -90.11 -0.25 0.90 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 12 C -0.52 -13.57 8.48 -34.44 -0.29 -13.86 16 13 H 0.06 1.48 7.56 -52.49 -0.40 1.08 16 14 C 0.06 1.69 5.34 -17.82 -0.10 1.60 16 15 N -0.89 -24.81 12.14 55.43 0.67 -24.14 16 16 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.12 -2.29 6.13 -25.61 -0.16 -2.45 16 21 S 0.09 1.27 21.78 -107.50 -2.34 -1.07 16 22 C -0.29 -3.84 6.57 -36.02 -0.24 -4.08 16 23 C -0.06 -0.55 10.09 36.00 0.36 -0.19 16 24 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.07 0.58 6.69 -51.93 -0.35 0.23 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.41 6.39 8.45 -40.82 -0.34 6.04 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.16 8.05 -51.93 -0.42 0.74 16 30 H 0.07 1.77 7.46 -51.92 -0.39 1.38 16 31 H 0.05 1.17 8.05 -51.92 -0.42 0.75 16 32 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.07 1.33 7.67 -51.93 -0.40 0.93 16 34 H 0.05 0.98 7.62 -51.93 -0.40 0.58 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 6.74 -51.93 -0.35 0.20 16 LS Contribution 313.06 15.07 4.72 4.72 Total: -1.00 -28.45 313.06 -9.99 -38.44 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.50 Total: 2.67 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -2.11 Total: -15.66 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.27 Total: -44.85 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -2.34 Total: -1.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.45 -9.99 -38.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393510597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.302 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds