Wall clock time and date at job start Mon Mar 30 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32128 * 122.70859 * 2 1 4 4 C 1.29688 * 116.86407 * 180.02562 * 3 2 1 5 5 N 1.38616 * 124.94884 * 179.97438 * 4 3 2 6 6 C 1.46495 * 120.00235 * 180.02562 * 5 4 3 7 7 H 1.09004 * 110.05651 * 326.42194 * 6 5 4 8 8 C 1.54268 * 110.03236 * 87.83418 * 6 5 4 9 9 C 1.55022 * 104.27752 * 142.80183 * 8 6 5 10 10 C 1.54885 * 102.68779 * 322.23443 * 9 8 6 11 11 H 1.08998 * 110.48656 * 279.02879 * 10 9 8 12 12 C 1.50706 * 110.48779 * 156.51451 * 10 9 8 13 13 H 1.07995 * 120.00167 * 242.96745 * 12 10 9 14 14 C 1.37879 * 119.99394 * 63.24444 * 12 10 9 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.53874 * 110.03358 * 205.00348 * 6 5 4 21 21 S 1.70971 * 110.10351 * 0.24677 * 4 3 2 22 22 C 1.33328 * 122.71335 * 180.02562 * 2 1 3 23 23 C 1.50697 * 125.94862 * 359.97438 * 22 2 1 24 24 H 1.09007 * 109.47305 * 89.97532 * 1 2 3 25 25 H 1.08994 * 109.47062 * 209.97287 * 1 2 3 26 26 H 1.08996 * 109.47717 * 329.97790 * 1 2 3 27 27 H 0.96998 * 119.99572 * 0.02562 * 5 4 3 28 28 H 1.09000 * 110.48571 * 261.57475 * 8 6 5 29 29 H 1.08998 * 110.48417 * 24.21927 * 8 6 5 30 30 H 1.09007 * 110.87568 * 203.89922 * 9 8 6 31 31 H 1.09009 * 110.69873 * 80.48969 * 9 8 6 32 32 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 33 33 H 1.09005 * 110.02922 * 121.43027 * 20 6 5 34 34 H 1.08998 * 110.06854 * 0.02562 * 20 6 5 35 35 H 1.09000 * 109.47114 * 90.00831 * 23 22 2 36 36 H 1.09004 * 109.47361 * 209.99795 * 23 22 2 37 37 H 1.08997 * 109.47465 * 330.00364 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2209 1.1118 0.0000 4 6 3.5110 0.9797 -0.0005 5 7 4.4167 2.0291 -0.0011 6 6 5.8557 1.7549 -0.0022 7 1 6.0636 0.8468 0.5638 8 6 6.3635 1.6022 -1.4509 9 6 7.7668 2.2607 -1.4356 10 6 7.5643 3.4711 -0.4907 11 1 7.1012 4.2998 -1.0262 12 6 8.8799 3.9000 0.1064 13 1 9.0323 3.8435 1.1741 14 6 9.8868 4.3700 -0.7099 15 7 9.6990 4.4445 -2.0094 16 14 11.5177 4.9010 0.0302 17 1 11.4748 4.7210 1.5035 18 1 12.6120 4.0737 -0.5384 19 1 11.7626 6.3311 -0.2864 20 6 6.6193 2.9431 0.6083 21 16 3.9321 -0.6773 -0.0080 22 6 2.2275 -1.1218 -0.0005 23 6 1.6791 -2.5255 -0.0006 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5141 27 1 4.0975 2.9451 -0.0008 28 1 6.4385 0.5486 -1.7198 29 1 5.7055 2.1277 -2.1431 30 1 8.0508 2.5933 -2.4341 31 1 8.5101 1.5741 -1.0300 32 1 10.4073 4.7755 -2.5836 33 1 7.1977 2.6117 1.4707 34 1 5.9196 3.7240 0.9061 35 1 1.5467 -2.8637 -1.0283 36 1 2.3761 -3.1879 0.5128 37 1 0.7181 -2.5402 0.5135 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393510597.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:06 Heat of formation + Delta-G solvation = 7.552760 kcal Electronic energy + Delta-G solvation = -17642.300867 eV Core-core repulsion = 14930.563139 eV Total energy + Delta-G solvation = -2711.737729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78203 -39.50114 -36.17470 -34.31532 -32.83729 -30.40837 -30.00739 -28.58277 -26.07858 -25.51854 -24.25303 -21.57311 -21.24524 -19.88768 -18.93593 -18.49801 -17.38188 -16.62497 -16.38628 -16.17769 -15.43069 -15.00720 -14.68327 -14.25807 -14.03640 -13.87553 -13.71512 -13.62986 -13.54661 -13.00324 -12.75999 -12.71491 -12.66697 -12.41744 -12.04950 -11.90146 -11.67026 -11.49608 -11.15403 -10.82874 -10.74323 -10.52625 -10.46193 -10.01516 -8.50882 -8.11245 -6.21080 0.10211 0.26638 0.92708 1.40935 1.43788 1.54164 1.99578 2.06103 2.44221 3.19727 3.67557 3.85374 3.90770 4.14686 4.25924 4.34620 4.58766 4.68384 4.69452 4.76912 4.81177 4.89678 4.94340 4.94733 5.00060 5.12801 5.13772 5.14276 5.33259 5.38322 5.55448 5.65769 5.82344 5.89413 5.97901 6.36597 6.41013 6.89656 7.06326 7.46766 8.97174 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.052471 B = 0.003768 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.499881 B = 7429.327680 C = 7570.700568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.082 3.918 3 N -0.585 5.585 4 C 0.308 3.692 5 N -0.683 5.683 6 C 0.160 3.840 7 H 0.087 0.913 8 C -0.130 4.130 9 C -0.090 4.090 10 C 0.040 3.960 11 H 0.000 1.000 12 C -0.531 4.531 13 H 0.057 0.943 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.951 3.049 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.110 4.110 21 S 0.092 5.908 22 C -0.281 4.281 23 C -0.061 4.061 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.066 0.934 27 H 0.409 0.591 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.043 0.957 32 H 0.259 0.741 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.073 -13.116 3.907 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 N -0.312 5.312 4 C -0.063 4.063 5 N -0.322 5.322 6 C 0.055 3.945 7 H 0.105 0.895 8 C -0.169 4.169 9 C -0.129 4.129 10 C 0.021 3.979 11 H 0.018 0.982 12 C -0.569 4.569 13 H 0.075 0.925 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.778 3.222 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.148 4.148 21 S 0.341 5.659 22 C -0.404 4.404 23 C -0.120 4.120 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.085 0.915 27 H 0.248 0.752 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.045 -13.109 3.763 19.577 hybrid contribution 0.305 1.329 -0.042 1.364 sum -13.740 -11.780 3.721 18.477 Atomic orbital electron populations 1.20427 0.85419 1.03883 1.03443 1.20279 0.98890 0.85615 1.00027 1.66319 1.02884 1.33169 1.28872 1.23656 0.90525 0.93919 0.98169 1.44457 1.03289 1.05553 1.78930 1.21771 0.76859 0.99230 0.96639 0.89529 1.22874 0.97494 1.00656 0.95898 1.22228 0.93752 0.97047 0.99878 1.19426 0.93154 0.93093 0.92192 0.98165 1.21596 0.99201 1.42563 0.93502 0.92526 1.25740 1.01936 0.95725 0.95238 1.70089 1.34098 1.47417 1.04199 0.85603 0.80039 0.77653 0.78947 1.18970 1.20724 1.21024 1.22386 0.97427 0.95785 0.99205 1.83853 1.08951 0.98594 1.74544 1.25505 0.93055 1.01913 1.19905 1.20195 1.01355 0.87256 1.03189 0.89998 0.88330 0.91485 0.75245 0.90972 0.92407 0.93910 0.93785 0.93175 0.91084 0.91818 0.90362 0.91116 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.30 10.05 71.23 0.72 -0.59 16 2 C 0.08 2.15 6.74 41.40 0.28 2.43 16 3 N -0.59 -18.75 10.59 -189.85 -2.01 -20.76 16 4 C 0.31 9.70 8.24 179.32 1.48 11.17 16 5 N -0.68 -21.56 5.19 -326.95 -1.70 -23.26 16 6 C 0.16 5.29 3.20 45.72 0.15 5.44 16 7 H 0.09 2.68 7.24 -2.38 -0.02 2.67 16 8 C -0.13 -4.67 6.53 31.72 0.21 -4.47 16 9 C -0.09 -4.08 5.69 31.93 0.18 -3.89 16 10 C 0.04 1.92 2.75 -10.47 -0.03 1.89 16 11 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 12 C -0.53 -28.31 8.48 25.60 0.22 -28.10 16 13 H 0.06 2.95 7.56 -2.91 -0.02 2.93 16 14 C 0.01 0.68 5.34 84.66 0.45 1.13 16 15 N -0.92 -52.67 12.14 21.45 0.26 -52.41 16 16 Si 0.95 42.97 29.54 68.60 2.03 44.99 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 C -0.11 -4.18 6.13 31.32 0.19 -3.99 16 21 S 0.09 2.47 21.78 -56.49 -1.23 1.24 16 22 C -0.28 -6.63 6.57 24.57 0.16 -6.47 16 23 C -0.06 -0.91 10.09 71.23 0.72 -0.19 16 24 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 25 H 0.10 1.20 6.69 -2.39 -0.02 1.19 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.41 12.71 8.45 -92.71 -0.78 11.93 16 28 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16 30 H 0.04 2.15 7.46 -2.38 -0.02 2.13 16 31 H 0.04 2.01 8.05 -2.38 -0.02 1.99 16 32 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.07 2.68 7.67 -2.38 -0.02 2.66 16 34 H 0.06 2.28 7.62 -2.39 -0.02 2.26 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.09 1.01 6.74 -2.39 -0.02 1.00 16 Total: -1.00 -61.77 313.06 2.35 -59.42 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.29 Total: 16.41 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 4.72 Total: -25.63 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -3.45 Total: -96.43 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -1.23 Total: 1.24 kcal Total: -61.77 2.35 -59.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393510597.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.968 kcal (2) G-P(sol) polarization free energy of solvation -61.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds