Wall clock time and date at job start Mon Mar 30 2020 07:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47236 * 2 1 4 4 N 1.46903 * 109.47305 * 239.99933 * 2 1 3 5 5 C 1.46901 * 111.00090 * 84.99855 * 4 2 1 6 6 H 1.09004 * 110.67077 * 31.76471 * 5 4 2 7 7 C 1.54895 * 110.75585 * 268.33241 * 5 4 2 8 8 C 1.54262 * 104.19389 * 203.74460 * 7 5 4 9 9 C 1.53872 * 106.60060 * 23.60753 * 8 7 5 10 10 H 1.09003 * 110.03065 * 240.71461 * 9 8 7 11 11 C 1.50693 * 110.07271 * 119.31007 * 9 8 7 12 12 H 1.08006 * 120.00246 * 248.14210 * 11 9 8 13 13 C 1.37874 * 120.00465 * 68.13887 * 11 9 8 14 14 N 1.31521 * 119.99860 * 8.61149 * 13 11 9 15 15 Si 1.86802 * 120.00593 * 188.61017 * 13 11 9 16 16 H 1.48502 * 109.47197 * 94.97948 * 15 13 11 17 17 H 1.48497 * 109.47417 * 214.98316 * 15 13 11 18 18 H 1.48506 * 109.46783 * 334.98184 * 15 13 11 19 19 C 1.54266 * 106.59956 * 359.97438 * 9 8 7 20 20 C 1.50696 * 109.47462 * 119.99827 * 2 1 3 21 21 N 1.29028 * 124.91840 * 74.69112 * 20 2 1 22 22 C 1.31781 * 117.12907 * 180.27219 * 21 20 2 23 23 C 1.33637 * 114.50027 * 359.97438 * 22 21 20 24 24 S 1.70982 * 124.91736 * 255.00263 * 20 2 1 25 25 H 1.08999 * 109.46566 * 300.00232 * 1 2 3 26 26 H 1.08997 * 109.47146 * 60.00008 * 1 2 3 27 27 H 1.08993 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.00907 * 110.99286 * 321.04734 * 4 2 1 29 29 H 1.08998 * 110.48539 * 322.42402 * 7 5 4 30 30 H 1.08998 * 110.48375 * 85.06180 * 7 5 4 31 31 H 1.09003 * 110.03127 * 264.32505 * 8 7 5 32 32 H 1.08995 * 110.07116 * 142.91715 * 8 7 5 33 33 H 0.96995 * 120.00333 * 179.97438 * 14 13 11 34 34 H 1.08998 * 110.49285 * 217.70878 * 19 9 8 35 35 H 1.09011 * 110.48114 * 95.06660 * 19 9 8 36 36 H 1.07999 * 122.75178 * 180.02562 * 22 21 20 37 37 H 1.07995 * 126.03756 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3469 6 1 2.3078 1.2371 -2.0181 7 6 0.7605 0.1834 -3.1532 8 6 1.1646 0.6552 -4.5652 9 6 2.6698 0.3705 -4.7099 10 1 3.2105 1.3005 -4.8855 11 6 2.9079 -0.5873 -5.8487 12 1 3.2618 -1.5878 -5.6479 13 6 2.6739 -0.1867 -7.1470 14 7 2.4076 1.0746 -7.4081 15 14 2.7351 -1.4350 -8.5353 16 1 1.3637 -1.9310 -8.8159 17 1 3.2883 -0.7927 -9.7546 18 1 3.6019 -2.5738 -8.1391 19 6 3.1281 -0.2638 -3.3805 20 6 2.0324 -0.7103 1.2304 21 7 2.0153 -1.9888 1.4039 22 6 2.4900 -2.4468 2.5448 23 6 2.9326 -1.5022 3.3800 24 16 2.7007 0.0617 2.6019 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.4495 -1.4980 -1.4100 29 1 0.3653 -0.8318 -3.1887 30 1 0.0283 0.8638 -2.7185 31 1 0.9748 1.7234 -4.6705 32 1 0.6056 0.1009 -5.3191 33 1 2.2433 1.3566 -8.3215 34 1 4.1236 0.0899 -3.1121 35 1 3.1152 -1.3515 -3.4524 36 1 2.5196 -3.4994 2.7848 37 1 3.3566 -1.6679 4.3593 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393576580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:31 Heat of formation + Delta-G solvation = 31.383636 kcal Electronic energy + Delta-G solvation = -17824.537062 eV Core-core repulsion = 15113.832718 eV Total energy + Delta-G solvation = -2710.704345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.78331 -38.05471 -35.32507 -32.41353 -30.45355 -29.10888 -28.01554 -26.15687 -25.54075 -23.57529 -22.27653 -19.94517 -19.48449 -18.91064 -17.99522 -16.25222 -15.94656 -15.23352 -14.95227 -14.49893 -14.37211 -13.97840 -13.64587 -13.28582 -12.99839 -12.35723 -12.26162 -12.17651 -11.62850 -11.53478 -11.38672 -11.12161 -10.94163 -10.54770 -10.44061 -10.23578 -9.79740 -9.63949 -9.59012 -9.44430 -9.11140 -8.94072 -8.68246 -8.30675 -7.99155 -5.96585 -3.96422 0.67454 1.29276 1.68979 2.83963 3.33894 3.41242 3.44958 4.11780 4.44746 4.53060 4.85567 5.05143 5.08753 5.20374 5.33916 5.41408 5.57226 5.57921 5.62073 5.78118 5.91070 6.00143 6.15291 6.24895 6.51873 6.64808 6.75920 6.86784 7.06575 7.11740 7.35172 7.48345 7.71385 7.74755 7.77406 7.96990 8.05693 8.55097 9.07678 9.66290 11.13598 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039648 B = 0.003815 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.045641 B = 7338.316061 C = 7568.804594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.159 3.841 3 H 0.095 0.905 4 N -0.666 5.666 5 C 0.080 3.920 6 H 0.074 0.926 7 C -0.150 4.150 8 C -0.095 4.095 9 C 0.042 3.958 10 H 0.033 0.967 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.885 3.115 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.274 1.274 19 C -0.098 4.098 20 C 0.082 3.918 21 N -0.464 5.464 22 C 0.042 3.958 23 C -0.270 4.270 24 S 0.104 5.896 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.350 0.650 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.057 0.943 33 H 0.258 0.742 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.173 0.827 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -1.178 20.259 20.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.045 3.955 3 H 0.113 0.887 4 N -0.297 5.297 5 C -0.029 4.029 6 H 0.092 0.908 7 C -0.189 4.189 8 C -0.134 4.134 9 C 0.023 3.977 10 H 0.051 0.949 11 C -0.548 4.548 12 H 0.073 0.927 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.713 3.287 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.199 1.199 19 C -0.136 4.136 20 C -0.198 4.198 21 N -0.178 5.178 22 C -0.109 4.109 23 C -0.410 4.410 24 S 0.358 5.642 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.171 0.829 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.190 0.810 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.076 -0.291 20.138 20.247 hybrid contribution -0.880 -1.533 -0.733 1.914 sum -2.956 -1.824 19.404 19.713 Atomic orbital electron populations 1.22601 0.95064 1.03221 1.02898 1.20127 0.93226 0.95913 0.86266 0.88726 1.60478 1.56930 1.09623 1.02689 1.22801 0.96421 0.94702 0.88972 0.90809 1.23136 0.96650 1.00160 0.98928 1.22107 1.00068 0.98514 0.92713 1.19272 0.91289 0.96384 0.90785 0.94854 1.21264 1.44161 0.98507 0.90821 0.92675 1.24978 0.95487 0.94887 0.98637 1.69990 1.48586 1.14583 1.19728 0.86695 0.78129 0.81856 0.82034 1.20830 1.21402 1.19881 1.22424 0.95948 1.00598 0.94627 1.27286 1.00468 0.92258 0.99764 1.66176 1.18540 1.12311 1.20734 1.21856 0.98940 1.01347 0.88767 1.26992 1.12673 0.94716 1.06588 1.83980 1.57360 1.11117 1.11694 0.92363 0.90633 0.91595 0.82934 0.92424 0.93667 0.94445 0.92425 0.93195 0.93576 0.92195 0.81027 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.98 37.16 0.33 -1.68 16 2 C 0.16 2.04 3.08 -68.86 -0.21 1.83 16 3 H 0.09 1.14 7.44 -51.93 -0.39 0.76 16 4 N -0.67 -10.24 6.11 -98.88 -0.60 -10.84 16 5 C 0.08 1.38 3.19 -65.73 -0.21 1.17 16 6 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 7 C -0.15 -2.66 5.54 -25.07 -0.14 -2.80 16 8 C -0.10 -2.15 6.08 -25.62 -0.16 -2.31 16 9 C 0.04 1.03 2.70 -90.66 -0.24 0.79 16 10 H 0.03 0.91 8.08 -51.93 -0.42 0.49 16 11 C -0.51 -14.05 8.22 -34.44 -0.28 -14.33 16 12 H 0.06 1.52 7.53 -52.48 -0.40 1.13 16 13 C 0.06 1.72 5.17 -17.82 -0.09 1.63 16 14 N -0.89 -25.88 13.04 55.43 0.72 -25.15 16 15 Si 0.88 21.51 29.55 -169.99 -5.02 16.49 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.10 -2.04 6.03 -25.09 -0.15 -2.19 16 20 C 0.08 1.05 6.25 -13.46 -0.08 0.97 16 21 N -0.46 -6.40 10.51 -11.86 -0.12 -6.52 16 22 C 0.04 0.47 11.35 -19.19 -0.22 0.25 16 23 C -0.27 -2.60 11.37 29.12 0.33 -2.27 16 24 S 0.10 1.09 23.18 -107.50 -2.49 -1.40 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.87 5.86 -51.93 -0.30 0.56 16 27 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 28 H 0.35 5.47 7.95 -39.29 -0.31 5.16 16 29 H 0.06 1.01 7.77 -51.93 -0.40 0.61 16 30 H 0.04 0.71 6.67 -51.93 -0.35 0.36 16 31 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.43 7.54 -51.93 -0.39 1.04 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.30 7.66 -51.92 -0.40 0.91 16 36 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -29.55 312.59 -9.35 -38.90 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.41 Total: 2.76 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -1.13 Total: -18.94 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -0.01 Total: -42.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.55 -9.35 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393576580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.284 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds