Wall clock time and date at job start Mon Mar 30 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46945 * 2 1 4 4 C 1.50698 * 109.47110 * 240.00641 * 2 1 3 5 5 H 1.07998 * 120.00116 * 239.99771 * 4 2 1 6 6 C 1.37888 * 119.99898 * 59.99460 * 4 2 1 7 7 N 1.31513 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99746 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47367 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47042 * 120.00296 * 8 6 4 11 11 H 1.48500 * 109.46991 * 240.00198 * 8 6 4 12 12 N 1.46895 * 109.47361 * 120.00447 * 2 1 3 13 13 C 1.46901 * 111.00350 * 274.99726 * 12 2 1 14 14 C 1.50699 * 109.47377 * 179.97438 * 13 12 2 15 15 C 1.33638 * 126.03157 * 89.96077 * 14 13 12 16 16 N 1.31787 * 114.49665 * 179.78900 * 15 14 13 17 17 C 1.29033 * 117.12471 * 0.47398 * 16 15 14 18 18 C 1.50690 * 124.91667 * 179.81301 * 17 16 15 19 19 H 1.09007 * 115.55011 * 205.36576 * 18 17 16 20 20 C 1.53069 * 117.51460 * 351.08631 * 18 17 16 21 21 C 1.53000 * 117.50063 * 59.69787 * 18 17 16 22 22 H 1.09002 * 117.49833 * 359.97438 * 21 18 17 23 23 C 1.52996 * 117.50107 * 144.99765 * 21 18 17 24 24 S 1.70976 * 110.16334 * 359.54570 * 17 16 15 25 25 H 1.09005 * 109.46909 * 299.99023 * 1 2 3 26 26 H 1.09001 * 109.47636 * 59.99204 * 1 2 3 27 27 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99755 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00093 * 38.95664 * 12 2 1 30 30 H 1.09004 * 109.46742 * 59.99729 * 13 12 2 31 31 H 1.09001 * 109.47097 * 300.00764 * 13 12 2 32 32 H 1.07998 * 122.75842 * 0.03614 * 15 14 13 33 33 H 1.09000 * 117.51640 * 0.02562 * 20 18 17 34 34 H 1.08999 * 117.49573 * 214.96266 * 20 18 17 35 35 H 1.08997 * 109.47260 * 59.90695 * 23 21 18 36 36 H 1.09000 * 109.47658 * 179.91076 * 23 21 18 37 37 H 1.09001 * 109.47132 * 299.90903 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1454 -2.2873 -3.6041 10 1 1.1659 -1.5862 -4.8162 11 1 3.1464 -0.1869 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3469 14 6 2.5875 -0.5221 3.5559 15 6 3.8661 -0.6504 3.9227 16 7 4.0509 -1.3481 5.0254 17 6 3.0000 -1.8233 5.6040 18 6 3.0080 -2.6461 6.8664 19 1 2.1572 -3.3150 6.9970 20 6 4.3651 -3.1168 7.3951 21 6 3.6034 -2.0070 8.1225 22 1 3.9897 -0.9915 8.0357 23 6 2.9592 -2.3557 9.4657 24 16 1.5965 -1.3779 4.7349 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7092 1.1621 -3.4843 29 1 1.4497 -1.4980 1.4098 30 1 1.0872 0.6161 2.5526 31 1 2.7589 1.0461 2.1182 32 1 4.6810 -0.2147 3.3638 33 1 5.2524 -2.8309 6.8301 34 1 4.4070 -4.0953 7.8734 35 1 3.0224 -3.4312 9.6307 36 1 3.4833 -1.8339 10.2665 37 1 1.9129 -2.0503 9.4571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393813462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:28 Heat of formation + Delta-G solvation = 60.021873 kcal Electronic energy + Delta-G solvation = -17117.941698 eV Core-core repulsion = 14408.479201 eV Total energy + Delta-G solvation = -2709.462497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.78326 -37.67881 -36.12226 -32.93492 -30.92840 -29.19845 -27.65247 -25.86668 -25.16204 -23.49587 -22.10322 -20.93208 -20.26614 -18.68629 -18.05233 -16.40059 -15.86059 -14.95198 -14.67023 -14.55566 -14.32157 -13.80886 -13.48150 -13.41132 -13.19907 -12.83834 -12.27947 -12.06529 -11.80744 -11.67837 -11.61363 -11.14433 -10.95974 -10.75928 -10.63166 -10.53808 -10.33229 -10.18926 -9.96928 -9.46291 -9.09812 -9.04152 -8.46802 -8.39358 -7.33843 -6.01378 -4.04659 0.85258 1.45465 1.92584 2.94035 3.30745 3.38552 3.44419 3.65154 4.10429 4.42838 4.58492 4.65491 4.68655 5.03988 5.16209 5.30481 5.37614 5.39553 5.45149 5.47810 5.58902 5.62635 5.75308 5.93298 6.07274 6.08147 6.16397 6.40552 6.62747 6.78370 7.02324 7.26615 7.68657 7.84125 7.90150 8.20400 8.43249 8.53907 9.02820 9.60849 11.05752 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044988 B = 0.003439 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.234492 B = 8139.362273 C = 8419.213730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.677 5.677 13 C 0.133 3.867 14 C -0.193 4.193 15 C 0.042 3.958 16 N -0.472 5.472 17 C 0.063 3.937 18 C -0.089 4.089 19 H 0.123 0.877 20 C -0.146 4.146 21 C -0.133 4.133 22 H 0.107 0.893 23 C -0.123 4.123 24 S 0.112 5.888 25 H 0.005 0.995 26 H 0.091 0.909 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.327 0.673 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -4.673 20.511 21.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.307 5.307 13 C 0.001 3.999 14 C -0.314 4.314 15 C -0.108 4.108 16 N -0.186 5.186 17 C -0.214 4.214 18 C -0.110 4.110 19 H 0.141 0.859 20 C -0.185 4.185 21 C -0.153 4.153 22 H 0.125 0.875 23 C -0.181 4.181 24 S 0.367 5.633 25 H 0.024 0.976 26 H 0.109 0.891 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.143 0.857 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.193 0.807 33 H 0.126 0.874 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.771 -4.736 20.526 21.139 hybrid contribution -0.057 0.091 -1.332 1.336 sum 1.714 -4.644 19.194 19.822 Atomic orbital electron populations 1.22452 1.00586 0.99327 1.00597 1.19224 0.89692 0.94533 0.86201 0.94634 1.21176 1.30220 1.12495 0.89448 0.91821 1.24955 0.95303 0.95206 0.99082 1.69887 1.37346 1.23192 1.23325 0.86436 0.78517 0.79681 0.82749 1.19701 1.21189 1.21099 1.60927 1.58374 1.08737 1.02655 1.20336 0.98783 0.94530 0.86276 1.26165 0.96095 1.06821 1.02344 1.21630 0.96062 0.99708 0.93431 1.66151 1.31586 1.11520 1.09350 1.25834 0.91531 1.03159 1.00900 1.20567 0.99717 1.01565 0.89182 0.85879 1.23167 0.94762 0.98428 1.02159 1.22461 1.02498 0.98897 0.91433 0.87488 1.21405 1.00522 1.01510 0.94628 1.83873 1.12616 1.47782 1.19003 0.97635 0.89056 0.95244 0.93072 0.85693 0.94924 0.89380 0.80661 0.87426 0.88258 0.92297 0.91822 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 8.94 37.16 0.33 -3.72 16 2 C 0.21 5.23 2.57 -68.87 -0.18 5.06 16 3 H 0.04 0.96 7.80 -51.93 -0.40 0.55 16 4 C -0.49 -13.65 8.84 -34.44 -0.30 -13.96 16 5 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 6 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.68 -14.33 6.22 -109.22 -0.68 -15.01 16 13 C 0.13 2.36 6.02 -4.98 -0.03 2.33 16 14 C -0.19 -3.09 6.11 -35.92 -0.22 -3.31 16 15 C 0.04 0.67 11.25 -19.18 -0.22 0.45 16 16 N -0.47 -7.27 10.03 -11.87 -0.12 -7.39 16 17 C 0.06 0.86 6.96 -13.46 -0.09 0.76 16 18 C -0.09 -0.93 6.01 -91.74 -0.55 -1.48 16 19 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 20 C -0.15 -1.37 9.77 -26.69 -0.26 -1.63 16 21 C -0.13 -1.19 6.11 -90.62 -0.55 -1.75 16 22 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 23 C -0.12 -0.82 10.19 37.16 0.38 -0.44 16 24 S 0.11 1.53 23.18 -107.50 -2.49 -0.96 16 25 H 0.00 0.10 7.45 -51.93 -0.39 -0.29 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.33 6.73 8.46 -39.30 -0.33 6.40 16 30 H 0.03 0.57 7.44 -51.93 -0.39 0.19 16 31 H 0.09 1.56 8.06 -51.93 -0.42 1.14 16 32 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.11 1.18 7.85 -51.93 -0.41 0.77 16 34 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 35 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 323.62 15.07 4.88 4.88 Total: -1.00 -29.01 323.62 -10.16 -39.17 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.56 Total: 3.98 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -1.79 Total: -16.25 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.17 Total: -47.30 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.49 Total: -0.96 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.01 -10.16 -39.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393813462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.192 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds