Wall clock time and date at job start Mon Mar 30 2020 07:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46945 * 2 1 4 4 C 1.50698 * 109.47110 * 240.00641 * 2 1 3 5 5 H 1.07998 * 120.00116 * 239.99771 * 4 2 1 6 6 C 1.37888 * 119.99898 * 59.99460 * 4 2 1 7 7 N 1.31513 * 119.99946 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99746 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47367 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47042 * 120.00296 * 8 6 4 11 11 H 1.48500 * 109.46991 * 240.00198 * 8 6 4 12 12 N 1.46895 * 109.47361 * 120.00447 * 2 1 3 13 13 C 1.46901 * 111.00350 * 274.99726 * 12 2 1 14 14 C 1.50699 * 109.47377 * 179.97438 * 13 12 2 15 15 C 1.33638 * 126.03157 * 89.96077 * 14 13 12 16 16 N 1.31787 * 114.49665 * 179.78900 * 15 14 13 17 17 C 1.29033 * 117.12471 * 0.47398 * 16 15 14 18 18 C 1.50690 * 124.91667 * 179.81301 * 17 16 15 19 19 H 1.09007 * 115.55011 * 205.36576 * 18 17 16 20 20 C 1.53069 * 117.51460 * 351.08631 * 18 17 16 21 21 C 1.53000 * 117.50063 * 59.69787 * 18 17 16 22 22 H 1.09002 * 117.49833 * 359.97438 * 21 18 17 23 23 C 1.52996 * 117.50107 * 144.99765 * 21 18 17 24 24 S 1.70976 * 110.16334 * 359.54570 * 17 16 15 25 25 H 1.09005 * 109.46909 * 299.99023 * 1 2 3 26 26 H 1.09001 * 109.47636 * 59.99204 * 1 2 3 27 27 H 1.09006 * 109.46945 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99755 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00093 * 38.95664 * 12 2 1 30 30 H 1.09004 * 109.46742 * 59.99729 * 13 12 2 31 31 H 1.09001 * 109.47097 * 300.00764 * 13 12 2 32 32 H 1.07998 * 122.75842 * 0.03614 * 15 14 13 33 33 H 1.09000 * 117.51640 * 0.02562 * 20 18 17 34 34 H 1.08999 * 117.49573 * 214.96266 * 20 18 17 35 35 H 1.08997 * 109.47260 * 59.90695 * 23 21 18 36 36 H 1.09000 * 109.47658 * 179.91076 * 23 21 18 37 37 H 1.09001 * 109.47132 * 299.90903 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9433 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 3.1454 -2.2873 -3.6041 10 1 1.1659 -1.5862 -4.8162 11 1 3.1464 -0.1869 -4.8166 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3469 14 6 2.5875 -0.5221 3.5559 15 6 3.8661 -0.6504 3.9227 16 7 4.0509 -1.3481 5.0254 17 6 3.0000 -1.8233 5.6040 18 6 3.0080 -2.6461 6.8664 19 1 2.1572 -3.3150 6.9970 20 6 4.3651 -3.1168 7.3951 21 6 3.6034 -2.0070 8.1225 22 1 3.9897 -0.9915 8.0357 23 6 2.9592 -2.3557 9.4657 24 16 1.5965 -1.3779 4.7349 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 0.7092 1.1621 -3.4843 29 1 1.4497 -1.4980 1.4098 30 1 1.0872 0.6161 2.5526 31 1 2.7589 1.0461 2.1182 32 1 4.6810 -0.2147 3.3638 33 1 5.2524 -2.8309 6.8301 34 1 4.4070 -4.0953 7.8734 35 1 3.0224 -3.4312 9.6307 36 1 3.4833 -1.8339 10.2665 37 1 1.9129 -2.0503 9.4571 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393813462.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:28 Heat of formation + Delta-G solvation = 43.016841 kcal Electronic energy + Delta-G solvation = -17118.679092 eV Core-core repulsion = 14408.479201 eV Total energy + Delta-G solvation = -2710.199891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88951 -38.59593 -37.79636 -34.80883 -32.46658 -30.26141 -28.90464 -27.30037 -26.97074 -24.84534 -23.15029 -22.19811 -21.64006 -19.82151 -19.18294 -18.32865 -17.02883 -16.78282 -16.08832 -15.74210 -15.42110 -15.09576 -14.95332 -14.77973 -14.07298 -13.96046 -13.63113 -13.58136 -13.20365 -12.89017 -12.82662 -12.71856 -12.51376 -12.29399 -12.22249 -12.08084 -11.94870 -11.45357 -11.15421 -11.03409 -10.55262 -10.50566 -10.24213 -9.59975 -9.05729 -8.11612 -6.22568 -0.29760 0.32901 0.76954 1.41210 1.43344 1.55531 1.78434 2.43390 2.85086 3.14549 3.17000 3.65555 3.78428 3.89136 3.93204 3.98338 4.20235 4.38063 4.44453 4.59771 4.73507 4.77320 4.83925 4.89131 4.94715 4.99243 5.05510 5.16261 5.22004 5.26315 5.35922 5.45439 5.67417 5.77758 6.23013 6.56570 6.69850 6.75390 6.90537 7.47235 8.94067 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.044988 B = 0.003439 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.234492 B = 8139.362273 C = 8419.213730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.216 3.784 3 H 0.009 0.991 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.281 1.281 12 N -0.681 5.681 13 C 0.141 3.859 14 C -0.220 4.220 15 C 0.041 3.959 16 N -0.495 5.495 17 C 0.070 3.930 18 C -0.106 4.106 19 H 0.145 0.855 20 C -0.142 4.142 21 C -0.122 4.122 22 H 0.092 0.908 23 C -0.120 4.120 24 S 0.144 5.856 25 H 0.027 0.973 26 H 0.064 0.936 27 H 0.032 0.968 28 H 0.262 0.738 29 H 0.330 0.670 30 H 0.037 0.963 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -6.015 22.069 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.108 3.892 3 H 0.027 0.973 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.311 5.311 13 C 0.009 3.991 14 C -0.342 4.342 15 C -0.110 4.110 16 N -0.210 5.210 17 C -0.207 4.207 18 C -0.128 4.128 19 H 0.162 0.838 20 C -0.181 4.181 21 C -0.142 4.142 22 H 0.110 0.890 23 C -0.177 4.177 24 S 0.401 5.599 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.194 0.806 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.551 -6.078 22.099 22.972 hybrid contribution 0.034 0.498 -1.694 1.765 sum 1.585 -5.580 20.405 21.214 Atomic orbital electron populations 1.22259 0.99783 0.99368 1.00321 1.18974 0.90189 0.92982 0.87067 0.97331 1.21447 1.30447 1.12469 0.91018 0.92914 1.25693 0.95436 0.95874 1.01812 1.70001 1.37978 1.24158 1.24020 0.85472 0.78083 0.78578 0.79260 1.19518 1.20501 1.20684 1.60762 1.58151 1.09259 1.02962 1.20182 0.98987 0.94022 0.85862 1.25923 0.96841 1.08549 1.02861 1.21762 0.96215 0.99426 0.93637 1.66221 1.32412 1.12670 1.09665 1.26499 0.91147 1.01829 1.01254 1.20868 1.01258 1.02264 0.88404 0.83760 1.23221 0.93287 0.99808 1.01815 1.22503 1.01671 0.98107 0.91925 0.88985 1.21424 1.00604 1.02555 0.93120 1.83683 1.11728 1.46780 1.17726 0.95437 0.91688 0.94914 0.92917 0.85281 0.94476 0.89928 0.80589 0.89336 0.85754 0.90944 0.90984 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.51 8.94 71.98 0.64 -6.87 16 2 C 0.22 10.88 2.57 44.17 0.11 11.00 16 3 H 0.01 0.48 7.80 -2.38 -0.02 0.46 16 4 C -0.52 -28.77 8.84 25.60 0.23 -28.54 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.56 5.30 84.66 0.45 1.01 16 7 N -0.92 -52.88 11.32 21.45 0.24 -52.64 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.23 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 N -0.68 -29.01 6.22 -499.47 -3.11 -32.12 16 13 C 0.14 5.03 6.02 85.56 0.51 5.54 16 14 C -0.22 -6.98 6.11 24.64 0.15 -6.83 16 15 C 0.04 1.28 11.25 83.66 0.94 2.23 16 16 N -0.50 -15.00 10.03 -191.45 -1.92 -16.92 16 17 C 0.07 1.81 6.96 88.52 0.62 2.42 16 18 C -0.11 -1.99 6.01 -11.52 -0.07 -2.06 16 19 H 0.14 2.08 8.14 -2.38 -0.02 2.06 16 20 C -0.14 -2.37 9.77 30.62 0.30 -2.07 16 21 C -0.12 -1.93 6.11 -10.79 -0.07 -1.99 16 22 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 23 C -0.12 -1.22 10.19 71.98 0.73 -0.49 16 24 S 0.14 3.76 23.18 -56.49 -1.31 2.45 16 25 H 0.03 1.14 7.45 -2.38 -0.02 1.12 16 26 H 0.06 3.46 6.07 -2.39 -0.01 3.44 16 27 H 0.03 1.48 8.13 -2.38 -0.02 1.46 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.33 13.52 8.46 -89.70 -0.76 12.77 16 30 H 0.04 1.29 7.44 -2.38 -0.02 1.27 16 31 H 0.08 2.99 8.06 -2.39 -0.02 2.97 16 32 H 0.18 5.32 8.06 -2.91 -0.02 5.30 16 33 H 0.09 1.85 7.85 -2.39 -0.02 1.83 16 34 H 0.12 1.44 8.05 -2.39 -0.02 1.42 16 35 H 0.07 0.57 7.90 -2.39 -0.02 0.55 16 36 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -61.72 323.62 0.79 -60.93 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.30 Total: 18.73 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 4.55 Total: -26.66 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -4.78 Total: -101.68 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.31 Total: 2.45 kcal Total: -61.72 0.79 -60.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393813462.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.951 kcal (2) G-P(sol) polarization free energy of solvation -61.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds