Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31783 * 122.75057 * 2 1 4 4 C 1.29021 * 117.12279 * 180.22549 * 3 2 1 5 5 C 1.50709 * 124.91313 * 179.81181 * 4 3 2 6 6 N 1.46907 * 109.46805 * 89.69865 * 5 4 3 7 7 C 1.47900 * 110.99721 * 69.87317 * 6 5 4 8 8 C 1.53991 * 107.05523 * 145.84609 * 7 6 5 9 9 C 1.54600 * 105.14041 * 358.77189 * 8 7 6 10 10 H 1.08996 * 110.72362 * 96.58143 * 9 8 7 11 11 C 1.50699 * 110.72387 * 219.69015 * 9 8 7 12 12 H 1.07999 * 120.00803 * 118.54532 * 11 9 8 13 13 C 1.37881 * 119.99889 * 298.54353 * 11 9 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.48530 * 110.99463 * 187.26873 * 6 5 4 20 20 S 1.70972 * 110.16872 * 359.54714 * 4 3 2 21 21 C 1.33635 * 122.74711 * 179.73593 * 2 1 3 22 22 C 1.50700 * 126.04101 * 359.96144 * 21 2 1 23 23 H 1.08997 * 109.47260 * 270.26947 * 1 2 3 24 24 H 1.09006 * 109.47145 * 30.26893 * 1 2 3 25 25 H 1.09000 * 109.47166 * 150.26441 * 1 2 3 26 26 H 1.09000 * 109.46932 * 329.69729 * 5 4 3 27 27 H 1.08992 * 109.46797 * 209.69355 * 5 4 3 28 28 H 1.08994 * 109.92455 * 26.49033 * 7 6 5 29 29 H 1.09002 * 109.91466 * 265.18898 * 7 6 5 30 30 H 1.09002 * 110.30762 * 239.85912 * 8 7 6 31 31 H 1.09004 * 110.31479 * 117.68765 * 8 7 6 32 32 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 33 33 H 1.09001 * 110.66521 * 81.84779 * 19 6 5 34 34 H 1.08995 * 110.66819 * 318.71147 * 19 6 5 35 35 H 1.09001 * 109.46982 * 180.02562 * 22 21 2 36 36 H 1.08998 * 109.46856 * 300.02128 * 22 21 2 37 37 H 1.08997 * 109.47103 * 60.02131 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0045 5 6 4.4835 2.1271 -0.0094 6 7 4.8013 2.5055 1.3741 7 6 5.6099 1.4596 2.0372 8 6 6.5752 2.1770 2.9989 9 6 6.2838 3.6840 2.8139 10 1 5.5958 4.0407 3.5803 11 6 7.5626 4.4810 2.8352 12 1 7.8550 5.0562 1.9691 13 6 8.3593 4.4761 3.9605 14 7 9.4751 5.1720 3.9793 15 14 7.8540 3.4808 5.4583 16 1 8.4183 2.1110 5.3559 17 1 6.3725 3.4021 5.5236 18 1 8.3693 4.1380 6.6862 19 6 5.6262 3.7401 1.4121 20 16 3.9333 -0.6731 0.0032 21 6 2.2299 -1.1240 0.0052 22 6 1.6847 -2.5288 0.0125 23 1 -0.3633 0.0048 1.0276 24 1 -0.3634 0.8876 -0.5180 25 1 -0.3633 -0.8923 -0.5097 26 1 4.0435 2.9793 -0.5273 27 1 5.3962 1.8224 -0.5214 28 1 6.1756 0.8997 1.2926 29 1 4.9600 0.7870 2.5969 30 1 7.6087 1.9561 2.7320 31 1 6.3769 1.8769 4.0278 32 1 10.0358 5.1682 4.7708 33 1 4.9978 4.6257 1.3171 34 1 6.3851 3.7199 0.6300 35 1 2.5113 -3.2394 0.0160 36 1 1.0744 -2.6770 0.9034 37 1 1.0740 -2.6862 -0.8766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397861595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = 43.134571 kcal Electronic energy + Delta-G solvation = -17844.330487 eV Core-core repulsion = 15134.135701 eV Total energy + Delta-G solvation = -2710.194786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.95867 -38.30225 -34.12820 -32.81093 -31.25442 -29.82023 -28.50429 -27.36204 -25.01539 -23.90828 -22.47959 -20.50636 -19.64695 -18.62743 -17.89446 -16.67188 -15.73301 -15.23677 -15.07361 -14.72041 -13.92938 -13.78422 -13.58082 -13.18381 -13.10101 -13.01252 -12.62565 -12.53485 -12.45019 -12.21092 -11.73047 -11.40082 -11.18717 -11.07848 -10.69876 -10.54496 -10.02270 -9.89287 -9.59280 -9.47022 -9.18856 -9.02995 -8.61570 -8.56260 -8.00934 -6.09475 -4.09228 0.69264 1.34134 1.75470 2.78356 3.28687 3.38310 3.41852 4.04764 4.41375 4.53086 4.78090 4.88652 4.96979 5.22347 5.22739 5.29729 5.32852 5.47772 5.48331 5.53940 5.61531 5.66434 5.77370 5.86743 5.92505 6.15150 6.22880 6.25809 6.50951 6.71555 6.75486 6.97570 7.23619 7.39185 7.53747 7.77668 7.83166 8.49299 8.93144 9.53175 11.03509 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037191 B = 0.004414 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.698864 B = 6341.223085 C = 6537.646477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.061 3.939 3 N -0.459 5.459 4 C 0.075 3.925 5 C 0.120 3.880 6 N -0.514 5.514 7 C 0.038 3.962 8 C -0.140 4.140 9 C 0.017 3.983 10 H 0.041 0.959 11 C -0.513 4.513 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.901 5.901 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.263 1.263 18 H -0.293 1.293 19 C 0.054 3.946 20 S 0.110 5.890 21 C -0.238 4.238 22 C -0.069 4.069 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.565 -14.731 -8.835 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 N -0.173 5.173 4 C -0.204 4.204 5 C -0.012 4.012 6 N -0.239 5.239 7 C -0.090 4.090 8 C -0.178 4.178 9 C -0.002 4.002 10 H 0.059 0.941 11 C -0.551 4.551 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.539 5.539 15 Si 0.707 3.293 16 H -0.203 1.203 17 H -0.188 1.188 18 H -0.220 1.220 19 C -0.073 4.073 20 S 0.366 5.634 21 C -0.359 4.359 22 C -0.128 4.128 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.149 -14.601 -8.471 22.026 hybrid contribution -0.173 -0.680 0.491 0.856 sum -14.322 -15.281 -7.980 22.412 Atomic orbital electron populations 1.20318 0.87391 1.02974 1.02784 1.20180 0.98073 0.86346 1.02561 1.66094 1.04541 1.31173 1.15480 1.26858 0.94001 0.97352 1.02184 1.20812 0.94090 0.93653 0.92666 1.64796 1.42093 1.04788 1.12234 1.22913 0.94689 0.94218 0.97216 1.22915 0.98572 0.98976 0.97365 1.20045 0.96520 0.91184 0.92477 0.94136 1.20951 1.03702 1.28730 1.01703 0.90723 1.24964 0.94584 0.95061 0.98269 1.69901 1.13068 1.41366 1.29564 0.86926 0.79588 0.80244 0.82514 1.20330 1.18776 1.22008 1.23237 0.93953 0.90358 0.99702 1.83987 1.06832 1.03835 1.68772 1.25662 0.95251 1.00824 1.14184 1.20159 1.00768 0.89131 1.02744 0.90762 0.90691 0.91027 0.87936 0.92510 0.94565 0.91767 0.90978 0.93093 0.92629 0.90762 0.93590 0.91435 0.90590 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.06 36.01 0.36 -0.36 16 2 C 0.06 0.80 6.74 -84.22 -0.57 0.23 16 3 N -0.46 -7.26 10.53 -8.05 -0.08 -7.34 16 4 C 0.08 1.14 6.46 -13.45 -0.09 1.06 16 5 C 0.12 1.85 5.35 -4.97 -0.03 1.82 16 6 N -0.51 -9.43 5.26 -231.89 -1.22 -10.65 16 7 C 0.04 0.69 5.81 -2.76 -0.02 0.67 16 8 C -0.14 -3.00 4.69 -25.37 -0.12 -3.12 16 9 C 0.02 0.41 2.46 -89.91 -0.22 0.18 16 10 H 0.04 1.00 7.36 -51.93 -0.38 0.62 16 11 C -0.51 -14.15 9.00 -34.44 -0.31 -14.46 16 12 H 0.07 2.21 8.03 -52.49 -0.42 1.79 16 13 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 14 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 15 Si 0.88 21.70 24.72 -169.99 -4.20 17.50 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.26 -6.32 6.38 56.52 0.36 -5.96 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 C 0.05 1.08 5.95 -1.90 -0.01 1.07 16 20 S 0.11 1.41 22.78 -107.50 -2.45 -1.04 16 21 C -0.24 -2.81 6.59 -35.92 -0.24 -3.05 16 22 C -0.07 -0.55 9.56 36.01 0.34 -0.20 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.51 7.46 -51.93 -0.39 0.12 16 26 H 0.10 1.51 8.11 -51.93 -0.42 1.09 16 27 H 0.06 0.81 7.81 -51.93 -0.41 0.40 16 28 H 0.04 0.60 7.57 -51.93 -0.39 0.21 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.60 7.80 -51.93 -0.40 1.20 16 31 H 0.05 1.09 5.94 -51.93 -0.31 0.78 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.49 8.00 -51.93 -0.42 0.07 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -31.07 309.14 -9.17 -40.25 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -5.66 Total: -2.66 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.99 Total: -14.17 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.53 Total: -44.53 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.20 Total: 17.50 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.45 Total: -1.04 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.07 -9.17 -40.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.381 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds