Wall clock time and date at job start Mon Mar 30 2020 06:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31783 * 122.75057 * 2 1 4 4 C 1.29021 * 117.12279 * 180.22549 * 3 2 1 5 5 C 1.50709 * 124.91313 * 179.81181 * 4 3 2 6 6 N 1.46907 * 109.46805 * 89.69865 * 5 4 3 7 7 C 1.47900 * 110.99721 * 69.87317 * 6 5 4 8 8 C 1.53991 * 107.05523 * 145.84609 * 7 6 5 9 9 C 1.54600 * 105.14041 * 358.77189 * 8 7 6 10 10 H 1.08996 * 110.72362 * 96.58143 * 9 8 7 11 11 C 1.50699 * 110.72387 * 219.69015 * 9 8 7 12 12 H 1.07999 * 120.00803 * 118.54532 * 11 9 8 13 13 C 1.37881 * 119.99889 * 298.54353 * 11 9 8 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.48530 * 110.99463 * 187.26873 * 6 5 4 20 20 S 1.70972 * 110.16872 * 359.54714 * 4 3 2 21 21 C 1.33635 * 122.74711 * 179.73593 * 2 1 3 22 22 C 1.50700 * 126.04101 * 359.96144 * 21 2 1 23 23 H 1.08997 * 109.47260 * 270.26947 * 1 2 3 24 24 H 1.09006 * 109.47145 * 30.26893 * 1 2 3 25 25 H 1.09000 * 109.47166 * 150.26441 * 1 2 3 26 26 H 1.09000 * 109.46932 * 329.69729 * 5 4 3 27 27 H 1.08992 * 109.46797 * 209.69355 * 5 4 3 28 28 H 1.08994 * 109.92455 * 26.49033 * 7 6 5 29 29 H 1.09002 * 109.91466 * 265.18898 * 7 6 5 30 30 H 1.09002 * 110.30762 * 239.85912 * 8 7 6 31 31 H 1.09004 * 110.31479 * 117.68765 * 8 7 6 32 32 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 33 33 H 1.09001 * 110.66521 * 81.84779 * 19 6 5 34 34 H 1.08995 * 110.66819 * 318.71147 * 19 6 5 35 35 H 1.09001 * 109.46982 * 180.02562 * 22 21 2 36 36 H 1.08998 * 109.46856 * 300.02128 * 22 21 2 37 37 H 1.08997 * 109.47103 * 60.02131 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0045 5 6 4.4835 2.1271 -0.0094 6 7 4.8013 2.5055 1.3741 7 6 5.6099 1.4596 2.0372 8 6 6.5752 2.1770 2.9989 9 6 6.2838 3.6840 2.8139 10 1 5.5958 4.0407 3.5803 11 6 7.5626 4.4810 2.8352 12 1 7.8550 5.0562 1.9691 13 6 8.3593 4.4761 3.9605 14 7 9.4751 5.1720 3.9793 15 14 7.8540 3.4808 5.4583 16 1 8.4183 2.1110 5.3559 17 1 6.3725 3.4021 5.5236 18 1 8.3693 4.1380 6.6862 19 6 5.6262 3.7401 1.4121 20 16 3.9333 -0.6731 0.0032 21 6 2.2299 -1.1240 0.0052 22 6 1.6847 -2.5288 0.0125 23 1 -0.3633 0.0048 1.0276 24 1 -0.3634 0.8876 -0.5180 25 1 -0.3633 -0.8923 -0.5097 26 1 4.0435 2.9793 -0.5273 27 1 5.3962 1.8224 -0.5214 28 1 6.1756 0.8997 1.2926 29 1 4.9600 0.7870 2.5969 30 1 7.6087 1.9561 2.7320 31 1 6.3769 1.8769 4.0278 32 1 10.0358 5.1682 4.7708 33 1 4.9978 4.6257 1.3171 34 1 6.3851 3.7199 0.6300 35 1 2.5113 -3.2394 0.0160 36 1 1.0744 -2.6770 0.9034 37 1 1.0740 -2.6862 -0.8766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397861595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:10 Heat of formation + Delta-G solvation = 21.857625 kcal Electronic energy + Delta-G solvation = -17845.253125 eV Core-core repulsion = 15134.135701 eV Total energy + Delta-G solvation = -2711.117423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98004 -39.81550 -35.57363 -34.36532 -32.82846 -30.63868 -30.16616 -28.69340 -26.11522 -25.51423 -23.69910 -21.93092 -21.44795 -19.66879 -18.96705 -18.60701 -17.19511 -16.77693 -16.24853 -16.00849 -15.48552 -15.09389 -14.78659 -14.63033 -14.31832 -13.89597 -13.74668 -13.67955 -13.46923 -13.21447 -13.14401 -12.96318 -12.65152 -12.47226 -12.32558 -11.98799 -11.81211 -11.71265 -11.42322 -11.05510 -10.74486 -10.56115 -10.16113 -9.61315 -9.37911 -8.30483 -6.34449 -0.29705 0.38158 0.77243 1.32429 1.36876 1.46968 1.77943 2.33751 2.98395 3.04132 3.19828 3.84182 3.92396 4.00919 4.08606 4.16064 4.27804 4.28308 4.46904 4.54769 4.67289 4.68411 4.70684 4.82648 4.83825 4.89379 5.00337 5.01593 5.07261 5.08320 5.23554 5.43647 5.56488 5.57693 5.86766 6.01053 6.30868 6.71385 6.84076 7.31562 8.85999 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037191 B = 0.004414 C = 0.004282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.698864 B = 6341.223085 C = 6537.646477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.032 3.968 3 N -0.484 5.484 4 C 0.045 3.955 5 C 0.122 3.878 6 N -0.521 5.521 7 C 0.047 3.953 8 C -0.138 4.138 9 C 0.011 3.989 10 H 0.031 0.969 11 C -0.515 4.515 12 H 0.038 0.962 13 C 0.018 3.982 14 N -0.948 5.948 15 Si 0.940 3.060 16 H -0.262 1.262 17 H -0.251 1.251 18 H -0.294 1.294 19 C 0.064 3.936 20 S 0.125 5.875 21 C -0.225 4.225 22 C -0.071 4.071 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.266 0.734 33 H 0.077 0.923 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.534 -17.650 -8.854 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 N -0.200 5.200 4 C -0.234 4.234 5 C -0.009 4.009 6 N -0.246 5.246 7 C -0.081 4.081 8 C -0.176 4.176 9 C -0.009 4.009 10 H 0.049 0.951 11 C -0.553 4.553 12 H 0.057 0.943 13 C -0.179 4.179 14 N -0.588 5.588 15 Si 0.765 3.235 16 H -0.187 1.187 17 H -0.175 1.175 18 H -0.221 1.221 19 C -0.063 4.063 20 S 0.381 5.619 21 C -0.346 4.346 22 C -0.130 4.130 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.138 -17.529 -8.508 25.300 hybrid contribution 0.402 0.218 0.398 0.606 sum -15.736 -17.311 -8.110 24.760 Atomic orbital electron populations 1.20408 0.85264 1.04075 1.03397 1.20693 0.99575 0.86105 1.03536 1.66089 1.05142 1.33068 1.15660 1.26670 0.93963 0.98329 1.04396 1.20782 0.94893 0.94383 0.90886 1.64742 1.41317 1.04048 1.14463 1.22828 0.94247 0.94005 0.96986 1.22779 0.98855 0.97462 0.98517 1.19962 0.94406 0.92129 0.94387 0.95114 1.21202 1.05264 1.28408 1.00416 0.94322 1.25782 0.94463 0.96235 1.01440 1.70039 1.14615 1.43495 1.30697 0.85947 0.79855 0.79260 0.78458 1.18664 1.17532 1.22075 1.23016 0.94021 0.91779 0.97499 1.83847 1.07842 1.02013 1.68214 1.26211 0.94385 1.02349 1.11648 1.20363 1.01524 0.86701 1.04410 0.90295 0.91293 0.88290 0.87841 0.91283 0.92880 0.90717 0.92148 0.92785 0.92490 0.90413 0.93890 0.90509 0.89099 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.06 71.24 0.72 -0.49 16 2 C 0.03 0.78 6.74 41.52 0.28 1.06 16 3 N -0.48 -14.68 10.53 -179.40 -1.89 -16.57 16 4 C 0.04 1.29 6.46 88.52 0.57 1.86 16 5 C 0.12 3.62 5.35 85.56 0.46 4.08 16 6 N -0.52 -18.45 5.26 -887.57 -4.66 -23.11 16 7 C 0.05 1.63 5.81 86.45 0.50 2.13 16 8 C -0.14 -5.72 4.69 31.47 0.15 -5.57 16 9 C 0.01 0.50 2.46 -10.33 -0.03 0.48 16 10 H 0.03 1.50 7.36 -2.39 -0.02 1.48 16 11 C -0.51 -29.12 9.00 25.60 0.23 -28.89 16 12 H 0.04 2.40 8.03 -2.91 -0.02 2.37 16 13 C 0.02 1.05 5.46 84.65 0.46 1.52 16 14 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 15 Si 0.94 44.67 24.72 68.60 1.70 46.36 16 16 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.25 -11.37 6.38 99.48 0.63 -10.74 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 19 C 0.06 2.55 5.95 86.65 0.52 3.07 16 20 S 0.13 2.92 22.78 -56.49 -1.29 1.63 16 21 C -0.22 -4.63 6.59 24.64 0.16 -4.47 16 22 C -0.07 -0.84 9.56 71.24 0.68 -0.16 16 23 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.10 1.06 7.46 -2.39 -0.02 1.04 16 26 H 0.10 2.99 8.11 -2.39 -0.02 2.97 16 27 H 0.07 1.86 7.81 -2.39 -0.02 1.84 16 28 H 0.05 1.65 7.57 -2.39 -0.02 1.63 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 30 H 0.06 2.63 7.80 -2.39 -0.02 2.61 16 31 H 0.05 2.19 5.94 -2.39 -0.01 2.18 16 32 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.04 1.72 7.92 -2.39 -0.02 1.70 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.80 8.00 -2.39 -0.02 0.78 16 Total: -1.00 -67.79 309.14 -0.17 -67.96 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.98 Total: 7.84 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 4.70 Total: -25.40 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -6.25 Total: -98.39 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.70 Total: 46.36 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.29 Total: 1.63 kcal Total: -67.79 -0.17 -67.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.813 kcal (2) G-P(sol) polarization free energy of solvation -67.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds