Wall clock time and date at job start Mon Mar 30 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47122 * 2 1 4 4 C 1.38258 * 119.94652 * 265.02341 * 3 2 1 5 5 C 1.38099 * 120.09913 * 179.97438 * 4 3 2 6 6 C 1.38905 * 119.97714 * 0.02562 * 5 4 3 7 7 N 1.39944 * 120.05629 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99748 * 33.29057 * 7 6 5 9 9 O 1.21586 * 120.00198 * 5.31416 * 8 7 6 10 10 N 1.34777 * 119.99647 * 185.31616 * 8 7 6 11 11 C 1.46505 * 119.99959 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46749 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00715 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99671 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99934 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00131 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47198 * 59.99605 * 16 14 12 18 18 H 1.48496 * 109.47109 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47185 * 299.99726 * 16 14 12 20 20 C 1.38807 * 119.88416 * 359.73864 * 6 5 4 21 21 C 1.38355 * 119.90561 * 0.51612 * 20 6 5 22 22 F 1.35098 * 119.98588 * 179.76755 * 21 20 6 23 23 H 1.08999 * 109.47351 * 299.99296 * 1 2 3 24 24 H 1.08999 * 109.47419 * 59.99780 * 1 2 3 25 25 H 1.09009 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46868 * 240.00206 * 2 1 3 27 27 H 1.08999 * 109.47419 * 120.00219 * 2 1 3 28 28 H 1.08005 * 119.95263 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.01600 * 180.02562 * 5 4 3 30 30 H 0.96995 * 120.00127 * 213.28425 * 7 6 5 31 31 H 0.97005 * 120.00288 * 359.97438 * 10 8 7 32 32 H 1.08991 * 109.46987 * 300.00282 * 11 10 8 33 33 H 1.08997 * 109.46852 * 60.00378 * 11 10 8 34 34 H 0.97000 * 120.00436 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.04325 * 180.27646 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0369 -1.1935 5 6 2.8204 3.3390 -1.1972 6 6 2.9546 4.0311 -0.0003 7 7 3.4212 5.3504 -0.0021 8 6 3.1235 6.1691 -1.0306 9 8 2.3710 5.7934 -1.9086 10 7 3.6601 7.4042 -1.0858 11 6 3.3370 8.2939 -2.2040 12 6 4.0608 9.6040 -2.0288 13 1 4.6974 9.7587 -1.1702 14 6 3.9094 10.6057 -2.9641 15 7 3.1338 10.4175 -4.0093 16 14 4.8071 12.2294 -2.7473 17 1 6.2716 11.9852 -2.7170 18 1 4.4795 13.1313 -3.8807 19 1 4.3844 12.8625 -1.4723 20 6 2.6204 3.4134 1.1970 21 6 2.1649 2.1070 1.1956 22 9 1.8436 1.5027 2.3604 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.2558 1.4993 -2.1244 29 1 3.0759 3.8190 -2.1303 30 1 3.9588 5.6757 0.7368 31 1 4.2602 7.7041 -0.3852 32 1 3.6484 7.8294 -3.1395 33 1 2.2620 8.4726 -2.2272 34 1 3.0269 11.1223 -4.6672 35 1 2.7194 3.9507 2.1286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488907969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:27 Heat of formation + Delta-G solvation = -63.260667 kcal Electronic energy + Delta-G solvation = -19148.902286 eV Core-core repulsion = 15867.880680 eV Total energy + Delta-G solvation = -3281.021606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.91764 -40.28008 -38.50686 -35.33727 -34.23978 -33.09388 -32.25390 -30.57151 -28.67877 -27.00406 -24.05827 -23.03162 -22.63278 -21.20495 -20.27912 -18.39127 -18.02184 -16.50057 -16.07632 -15.82306 -15.68831 -15.47513 -14.85433 -14.65729 -14.14651 -14.03747 -13.81895 -13.35365 -13.26144 -12.92727 -12.58390 -12.24396 -12.03848 -11.82129 -11.63002 -11.12396 -11.04702 -11.00308 -10.92541 -10.35957 -10.04786 -9.57151 -9.46475 -8.82193 -8.78669 -8.14435 -7.78186 -6.21176 -4.28615 1.19317 1.23782 3.00039 3.22536 3.27920 3.29476 3.44282 3.87658 4.26087 4.31633 4.61801 4.69504 4.83880 4.98001 5.15114 5.20386 5.23628 5.36373 5.41605 5.57031 5.72728 5.79947 5.99096 6.06410 6.14756 6.29282 6.45289 6.60826 6.94769 7.06942 7.31755 7.43119 7.46233 7.75105 7.93106 8.60999 8.76728 9.09866 9.38306 10.88905 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.050303 B = 0.003260 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.493681 B = 8587.948404 C = 8950.562126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.069 4.069 5 C -0.128 4.128 6 C 0.209 3.791 7 N -0.695 5.695 8 C 0.690 3.310 9 O -0.580 6.580 10 N -0.720 5.720 11 C 0.266 3.734 12 C -0.546 4.546 13 H 0.063 0.937 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.905 3.095 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.191 4.191 21 C 0.117 3.883 22 F -0.140 7.140 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.133 0.867 29 H 0.146 0.854 30 H 0.405 0.595 31 H 0.389 0.611 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.267 0.733 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 -17.227 9.858 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.147 4.147 4 C -0.088 4.088 5 C -0.149 4.149 6 C 0.111 3.889 7 N -0.342 5.342 8 C 0.390 3.610 9 O -0.457 6.457 10 N -0.371 5.371 11 C 0.145 3.855 12 C -0.584 4.584 13 H 0.081 0.919 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.732 3.268 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.201 1.201 20 C -0.213 4.213 21 C 0.097 3.903 22 F -0.119 7.119 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.240 0.760 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.806 -17.335 8.832 19.471 hybrid contribution 0.926 1.295 1.024 1.893 sum 0.120 -16.040 9.856 18.826 Atomic orbital electron populations 1.21752 0.94731 1.01612 1.02413 1.20393 0.96274 0.91958 1.02921 1.19816 1.05222 0.97649 0.91996 1.20783 0.96985 0.94154 0.96892 1.21358 1.01307 0.93635 0.98580 1.17198 0.95048 0.83486 0.93135 1.42862 1.56444 1.09989 1.24919 1.16150 0.81429 0.81484 0.81897 1.90904 1.39805 1.75515 1.39480 1.45803 1.49196 1.13011 1.29124 1.19070 0.96810 0.86598 0.83012 1.21160 1.29594 0.98496 1.09162 0.91907 1.24940 0.95208 0.98989 0.94790 1.69959 1.36880 1.34069 1.11253 0.86450 0.79934 0.82560 0.77819 1.20048 1.21022 1.20053 1.20700 1.07058 0.94969 0.98601 1.17076 1.01139 0.91108 0.80977 1.91458 1.90555 1.83251 1.46620 0.92622 0.92308 0.92432 0.90706 0.91086 0.84923 0.83659 0.75999 0.77821 0.95403 0.95444 0.92294 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.15 0.37 -0.96 16 2 C -0.08 -0.73 5.83 -27.89 -0.16 -0.89 16 3 C -0.14 -1.72 5.14 -104.52 -0.54 -2.25 16 4 C -0.07 -0.86 9.67 -39.62 -0.38 -1.24 16 5 C -0.13 -1.93 8.65 -39.39 -0.34 -2.27 16 6 C 0.21 3.05 6.28 -83.70 -0.53 2.52 16 7 N -0.69 -10.28 5.35 -14.23 -0.08 -10.35 16 8 C 0.69 13.60 8.30 -86.91 -0.72 12.87 16 9 O -0.58 -13.64 14.03 5.29 0.07 -13.57 16 10 N -0.72 -14.63 5.55 -66.42 -0.37 -15.00 16 11 C 0.27 6.86 5.43 -5.19 -0.03 6.84 16 12 C -0.55 -14.46 9.28 -34.44 -0.32 -14.78 16 13 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 15 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 16 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 C -0.19 -2.44 9.94 -39.33 -0.39 -2.83 16 21 C 0.12 1.48 7.24 -39.45 -0.29 1.19 16 22 F -0.14 -1.75 16.56 2.25 0.04 -1.71 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 27 H 0.07 0.64 7.78 -51.93 -0.40 0.24 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.15 2.48 6.41 -52.49 -0.34 2.15 16 30 H 0.40 4.51 8.83 -40.82 -0.36 4.15 16 31 H 0.39 6.63 8.34 -40.82 -0.34 6.29 16 32 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -31.21 308.90 -7.74 -38.95 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.35 Total: 6.59 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -3.42 Total: -0.13 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.29 Total: -50.25 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.21 -7.74 -38.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488907969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.310 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds