Wall clock time and date at job start Mon Mar 30 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47122 * 2 1 4 4 C 1.38258 * 119.94652 * 265.02341 * 3 2 1 5 5 C 1.38099 * 120.09913 * 179.97438 * 4 3 2 6 6 C 1.38905 * 119.97714 * 0.02562 * 5 4 3 7 7 N 1.39944 * 120.05629 * 179.97438 * 6 5 4 8 8 C 1.34781 * 119.99748 * 33.29057 * 7 6 5 9 9 O 1.21586 * 120.00198 * 5.31416 * 8 7 6 10 10 N 1.34777 * 119.99647 * 185.31616 * 8 7 6 11 11 C 1.46505 * 119.99959 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46749 * 180.02562 * 11 10 8 13 13 H 1.07997 * 120.00715 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99671 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99934 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00131 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47198 * 59.99605 * 16 14 12 18 18 H 1.48496 * 109.47109 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47185 * 299.99726 * 16 14 12 20 20 C 1.38807 * 119.88416 * 359.73864 * 6 5 4 21 21 C 1.38355 * 119.90561 * 0.51612 * 20 6 5 22 22 F 1.35098 * 119.98588 * 179.76755 * 21 20 6 23 23 H 1.08999 * 109.47351 * 299.99296 * 1 2 3 24 24 H 1.08999 * 109.47419 * 59.99780 * 1 2 3 25 25 H 1.09009 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46868 * 240.00206 * 2 1 3 27 27 H 1.08999 * 109.47419 * 120.00219 * 2 1 3 28 28 H 1.08005 * 119.95263 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.01600 * 180.02562 * 5 4 3 30 30 H 0.96995 * 120.00127 * 213.28425 * 7 6 5 31 31 H 0.97005 * 120.00288 * 359.97438 * 10 8 7 32 32 H 1.08991 * 109.46987 * 300.00282 * 11 10 8 33 33 H 1.08997 * 109.46852 * 60.00378 * 11 10 8 34 34 H 0.97000 * 120.00436 * 179.97438 * 15 14 12 35 35 H 1.08002 * 120.04325 * 180.27646 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3603 2.0369 -1.1935 5 6 2.8204 3.3390 -1.1972 6 6 2.9546 4.0311 -0.0003 7 7 3.4212 5.3504 -0.0021 8 6 3.1235 6.1691 -1.0306 9 8 2.3710 5.7934 -1.9086 10 7 3.6601 7.4042 -1.0858 11 6 3.3370 8.2939 -2.2040 12 6 4.0608 9.6040 -2.0288 13 1 4.6974 9.7587 -1.1702 14 6 3.9094 10.6057 -2.9641 15 7 3.1338 10.4175 -4.0093 16 14 4.8071 12.2294 -2.7473 17 1 6.2716 11.9852 -2.7170 18 1 4.4795 13.1313 -3.8807 19 1 4.3844 12.8625 -1.4723 20 6 2.6204 3.4134 1.1970 21 6 2.1649 2.1070 1.1956 22 9 1.8436 1.5027 2.3604 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 2.2558 1.4993 -2.1244 29 1 3.0759 3.8190 -2.1303 30 1 3.9588 5.6757 0.7368 31 1 4.2602 7.7041 -0.3852 32 1 3.6484 7.8294 -3.1395 33 1 2.2620 8.4726 -2.2272 34 1 3.0269 11.1223 -4.6672 35 1 2.7194 3.9507 2.1286 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488907969.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:26 Heat of formation + Delta-G solvation = -83.577289 kcal Electronic energy + Delta-G solvation = -19149.783280 eV Core-core repulsion = 15867.880680 eV Total energy + Delta-G solvation = -3281.902600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.117 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.91499 -41.65977 -39.76656 -36.63639 -36.02479 -34.55808 -33.80356 -31.61872 -29.99304 -28.70030 -25.36870 -24.23588 -24.07364 -22.41047 -21.67889 -19.98110 -19.22081 -18.13472 -17.39803 -17.04266 -16.95979 -16.69402 -16.34722 -16.19519 -15.71066 -14.98481 -14.86760 -14.70623 -14.48285 -14.05296 -14.00590 -13.88511 -13.55883 -12.97863 -12.90357 -12.68346 -12.61457 -12.23548 -11.97806 -11.79604 -11.50955 -11.37465 -11.13243 -10.79964 -9.96055 -9.82389 -9.02610 -8.28782 -6.45238 0.11945 0.19175 1.43767 1.48149 1.55252 1.63032 2.02572 2.38781 2.64967 3.06581 3.21721 3.41619 3.75416 3.77166 4.06948 4.21996 4.38697 4.45205 4.50351 4.68822 4.91557 4.99468 5.06494 5.07120 5.14272 5.25298 5.25484 5.35713 5.42760 5.44648 5.49667 5.61887 5.82148 5.95455 6.13129 6.65249 7.12253 7.24776 7.54652 8.83140 Molecular weight = 266.12amu Principal moments of inertia in cm(-1) A = 0.050303 B = 0.003260 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.493681 B = 8587.948404 C = 8950.562126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.137 4.137 4 C -0.068 4.068 5 C -0.148 4.148 6 C 0.184 3.816 7 N -0.673 5.673 8 C 0.692 3.308 9 O -0.622 6.622 10 N -0.714 5.714 11 C 0.285 3.715 12 C -0.557 4.557 13 H 0.085 0.915 14 C 0.006 3.994 15 N -0.930 5.930 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.180 4.180 21 C 0.109 3.891 22 F -0.137 7.137 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.155 0.845 29 H 0.117 0.883 30 H 0.424 0.576 31 H 0.408 0.592 32 H -0.009 1.009 33 H -0.011 1.011 34 H 0.269 0.731 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 -17.864 11.773 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.138 4.138 4 C -0.086 4.086 5 C -0.169 4.169 6 C 0.088 3.912 7 N -0.322 5.322 8 C 0.393 3.607 9 O -0.503 6.503 10 N -0.367 5.367 11 C 0.162 3.838 12 C -0.595 4.595 13 H 0.103 0.897 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.808 3.192 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.202 4.202 21 C 0.089 3.911 22 F -0.116 7.116 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.172 0.828 29 H 0.135 0.865 30 H 0.263 0.737 31 H 0.244 0.756 32 H 0.009 0.991 33 H 0.007 0.993 34 H 0.078 0.922 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.111 -18.017 10.831 21.023 hybrid contribution 0.595 1.319 0.460 1.518 sum 0.706 -16.699 11.291 20.170 Atomic orbital electron populations 1.21750 0.94347 1.02724 1.01625 1.20500 0.96482 0.90314 1.04277 1.20140 1.03529 0.98821 0.91340 1.20979 0.96166 0.93204 0.98251 1.21306 1.02775 0.95003 0.97791 1.17324 0.96877 0.83192 0.93827 1.42435 1.56143 1.09636 1.23989 1.16214 0.80762 0.81422 0.82333 1.90878 1.41611 1.76306 1.41485 1.45339 1.49939 1.12914 1.28486 1.18482 0.94428 0.87523 0.83399 1.21566 1.29608 0.98464 1.09856 0.89724 1.26031 0.95892 1.03283 0.94223 1.70124 1.38703 1.35544 1.12437 0.85212 0.78895 0.77154 0.77984 1.18682 1.21166 1.18717 1.20825 1.05697 0.95051 0.98611 1.17215 1.01228 0.91235 0.81383 1.91470 1.90506 1.83138 1.46446 0.93691 0.92819 0.90440 0.88789 0.90355 0.82771 0.86470 0.73683 0.75634 0.99080 0.99275 0.92198 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.89 71.98 0.71 -1.60 16 2 C -0.08 -1.26 5.83 29.85 0.17 -1.09 16 3 C -0.14 -2.97 5.14 -19.80 -0.10 -3.07 16 4 C -0.07 -1.61 9.67 22.24 0.22 -1.40 16 5 C -0.15 -4.51 8.65 22.40 0.19 -4.32 16 6 C 0.18 5.28 6.28 38.14 0.24 5.52 16 7 N -0.67 -19.60 5.35 -317.19 -1.70 -21.30 16 8 C 0.69 27.90 8.30 179.05 1.49 29.39 16 9 O -0.62 -30.72 14.03 -3.99 -0.06 -30.78 16 10 N -0.71 -29.46 5.55 -482.30 -2.68 -32.14 16 11 C 0.28 15.31 5.43 85.63 0.46 15.77 16 12 C -0.56 -29.63 9.28 25.60 0.24 -29.39 16 13 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 14 C 0.01 0.31 5.46 84.66 0.46 0.77 16 15 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 16 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 20 C -0.18 -4.27 9.94 22.43 0.22 -4.05 16 21 C 0.11 2.55 7.24 22.36 0.16 2.71 16 22 F -0.14 -3.10 16.56 44.97 0.74 -2.35 16 23 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.09 1.18 8.05 -2.38 -0.02 1.16 16 27 H 0.08 1.18 7.78 -2.39 -0.02 1.16 16 28 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.12 4.25 6.41 -2.91 -0.02 4.24 16 30 H 0.42 8.78 8.83 -92.71 -0.82 7.96 16 31 H 0.41 13.57 8.34 -92.70 -0.77 12.80 16 32 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -69.61 308.90 2.63 -66.98 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.46 Total: 21.76 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 4.47 Total: 9.25 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -4.09 Total: -108.46 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.06 Total: -30.78 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.74 Total: -2.35 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -69.61 2.63 -66.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488907969.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.599 kcal (2) G-P(sol) polarization free energy of solvation -69.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds