Wall clock time and date at job start Mon Mar 30 2020 06:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39873 * 126.03844 * 2 1 4 4 N 1.30839 * 108.20228 * 179.73898 * 3 2 1 5 5 N 1.40086 * 108.20165 * 0.40361 * 4 3 2 6 6 C 1.46502 * 126.03341 * 179.85277 * 5 4 3 7 7 C 1.52995 * 109.47529 * 304.68898 * 6 5 4 8 8 S 1.81398 * 109.47291 * 180.02562 * 7 6 5 9 9 C 1.81404 * 102.99929 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47182 * 180.02562 * 9 8 7 11 11 C 1.50707 * 115.54590 * 294.76343 * 10 9 8 12 12 H 1.08000 * 119.99778 * 95.08291 * 11 10 9 13 13 C 1.37873 * 119.99924 * 274.80154 * 11 10 9 14 14 N 1.31517 * 120.00094 * 6.34722 * 13 11 10 15 15 Si 1.86801 * 119.99932 * 186.35128 * 13 11 10 16 16 H 1.48499 * 109.46951 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47198 * 120.00033 * 15 13 11 18 18 H 1.48508 * 109.46958 * 239.99876 * 15 13 11 19 19 C 1.52992 * 117.49950 * 80.43326 * 10 9 8 20 20 C 1.52993 * 117.50197 * 149.09579 * 10 9 8 21 21 C 1.34945 * 107.92874 * 359.58886 * 5 4 3 22 22 H 1.09000 * 109.46919 * 270.00225 * 1 2 3 23 23 H 1.09003 * 109.47117 * 30.00503 * 1 2 3 24 24 H 1.08998 * 109.47045 * 150.00048 * 1 2 3 25 25 H 1.07995 * 125.89858 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.46899 * 184.68745 * 6 5 4 27 27 H 1.09003 * 109.47208 * 64.69663 * 6 5 4 28 28 H 1.09004 * 109.47156 * 60.00003 * 7 6 5 29 29 H 1.08995 * 109.47232 * 300.00388 * 7 6 5 30 30 H 1.08999 * 109.46992 * 59.99769 * 9 8 7 31 31 H 1.09001 * 109.46816 * 300.00238 * 9 8 7 32 32 H 0.97002 * 120.00152 * 182.28789 * 14 13 11 33 33 H 1.09009 * 117.49997 * 215.00443 * 19 10 9 34 34 H 1.08995 * 117.50336 * 0.02562 * 19 10 9 35 35 H 1.09003 * 117.49914 * 359.97438 * 20 10 9 36 36 H 1.09000 * 117.50387 * 144.96939 * 20 10 9 37 37 H 1.07996 * 126.12839 * 180.25680 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1310 0.0000 4 7 3.5754 0.7303 0.0057 5 7 3.5844 -0.6705 0.0001 6 6 4.7746 -1.5247 0.0005 7 6 5.6716 -1.1505 -1.1811 8 16 7.1449 -2.2087 -1.1809 9 6 8.0681 -1.6230 -2.6284 10 6 9.3603 -2.4299 -2.7698 11 6 10.3621 -2.2530 -1.6578 12 1 10.3816 -2.9496 -0.8328 13 6 11.2573 -1.2052 -1.6968 14 7 11.1579 -0.2898 -2.6359 15 14 12.6116 -1.0857 -0.4157 16 1 12.5063 -2.2307 0.5241 17 1 13.9345 -1.1177 -1.0895 18 1 12.4701 0.1866 0.3370 19 6 9.2629 -3.8116 -3.4196 20 6 9.9047 -2.6501 -4.1826 21 6 2.3032 -1.0942 0.0001 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.9951 2.1578 -0.0004 26 1 4.4728 -2.5684 -0.0886 27 1 5.3229 -1.3835 0.9320 28 1 5.9733 -0.1068 -1.0919 29 1 5.1233 -1.2918 -2.1124 30 1 8.3102 -0.5678 -2.5023 31 1 7.4599 -1.7518 -3.5237 32 1 11.8074 0.4290 -2.6833 33 1 9.9233 -4.5927 -3.0429 34 1 8.2783 -4.1456 -3.7468 35 1 9.3420 -2.2204 -5.0114 36 1 10.9874 -2.6666 -4.3080 37 1 1.9725 -2.1222 0.0004 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596361467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:53 Heat of formation + Delta-G solvation = 76.022123 kcal Electronic energy + Delta-G solvation = -17064.195350 eV Core-core repulsion = 14355.426676 eV Total energy + Delta-G solvation = -2708.768674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.11677 -38.44214 -35.68352 -34.01120 -32.60525 -31.20064 -29.48969 -27.46433 -27.06124 -24.81221 -22.94089 -21.77640 -21.22919 -20.93641 -18.19355 -17.99885 -16.93626 -16.62046 -16.36303 -15.73410 -15.61355 -15.25048 -14.96567 -14.41024 -14.19993 -13.99354 -13.83926 -13.71326 -13.40798 -13.03391 -12.93528 -12.85028 -12.70698 -12.52039 -12.34803 -12.02516 -11.54333 -11.43032 -11.02685 -10.74869 -10.49174 -10.44132 -9.88442 -9.23718 -8.48313 -8.12980 -6.22770 0.57434 1.00173 1.38525 1.42187 1.52426 1.71108 1.84494 1.89237 2.42549 3.16832 3.45167 3.52257 3.72431 3.95045 4.06370 4.16236 4.21041 4.37219 4.42410 4.51849 4.58099 4.61365 4.66697 4.74112 4.91721 4.95535 4.99189 5.04071 5.21755 5.27910 5.33724 5.56669 5.61247 5.76557 5.77162 6.13376 6.36889 6.77063 6.82206 7.45739 8.95691 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028460 B = 0.003804 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.584861 B = 7358.294494 C = 7831.324323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.255 4.255 3 C 0.038 3.962 4 N -0.344 5.344 5 N -0.379 5.379 6 C 0.161 3.839 7 C -0.097 4.097 8 S -0.240 6.240 9 C -0.017 4.017 10 C 0.027 3.973 11 C -0.496 4.496 12 H 0.051 0.949 13 C 0.027 3.973 14 N -0.907 5.907 15 Si 0.945 3.055 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.285 1.285 19 C -0.178 4.178 20 C -0.153 4.153 21 C 0.053 3.947 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.200 0.800 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.259 0.741 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.569 -2.289 3.541 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.267 4.267 3 C -0.148 4.148 4 N -0.165 5.165 5 N -0.162 5.162 6 C 0.039 3.961 7 C -0.247 4.247 8 S -0.013 6.013 9 C -0.166 4.166 10 C 0.025 3.975 11 C -0.534 4.534 12 H 0.069 0.931 13 C -0.173 4.173 14 N -0.545 5.545 15 Si 0.771 3.229 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.211 1.211 19 C -0.216 4.216 20 C -0.193 4.193 21 C -0.093 4.093 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.217 0.783 26 H 0.151 0.849 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -17.893 -2.639 4.235 18.576 hybrid contribution 0.196 1.328 -0.501 1.433 sum -17.698 -1.311 3.734 18.135 Atomic orbital electron populations 1.20075 0.87125 1.03032 1.02177 1.20580 0.98611 0.91280 1.16203 1.24326 0.89673 1.01366 0.99414 1.77356 1.22982 0.90349 1.25812 1.48750 1.06112 1.04303 1.57005 1.21374 0.82994 0.93860 0.97888 1.23467 0.97204 1.02018 1.01977 1.86556 1.21157 1.49910 1.43642 1.22831 0.97553 1.01559 0.94623 1.18529 0.92162 0.93684 0.93076 1.20611 1.15582 1.10960 1.06278 0.93111 1.25601 0.99458 0.94876 0.97360 1.70107 1.36011 1.13414 1.34976 0.85708 0.79588 0.77909 0.79714 1.19188 1.20545 1.21081 1.23011 1.01005 0.92091 1.05467 1.22517 0.98565 1.02832 0.95411 1.23033 0.83161 1.01851 1.01240 0.91481 0.91257 0.91008 0.78286 0.84875 0.89389 0.91539 0.90017 0.93079 0.91777 0.93217 0.90229 0.88854 0.90577 0.91879 0.77680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.37 71.24 0.74 -0.06 16 2 C -0.26 -4.92 6.10 -20.14 -0.12 -5.05 16 3 C 0.04 0.88 11.96 85.24 1.02 1.90 16 4 N -0.34 -10.27 12.42 -57.02 -0.71 -10.98 16 5 N -0.38 -9.68 3.68 -348.06 -1.28 -10.96 16 6 C 0.16 3.96 6.52 86.38 0.56 4.52 16 7 C -0.10 -3.02 6.13 71.98 0.44 -2.58 16 8 S -0.24 -9.14 21.43 -56.49 -1.21 -10.35 16 9 C -0.02 -0.76 5.80 71.98 0.42 -0.34 16 10 C 0.03 1.31 1.33 -52.93 -0.07 1.23 16 11 C -0.50 -26.99 8.49 25.60 0.22 -26.77 16 12 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 13 C 0.03 1.50 5.39 84.65 0.46 1.96 16 14 N -0.91 -51.76 12.92 21.45 0.28 -51.49 16 15 Si 0.94 43.96 29.54 68.60 2.03 45.99 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 C -0.18 -7.44 9.96 30.61 0.30 -7.13 16 20 C -0.15 -7.03 9.42 30.62 0.29 -6.74 16 21 C 0.05 1.02 11.36 83.54 0.95 1.97 16 22 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 26 H 0.13 2.44 8.07 -2.38 -0.02 2.42 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 2.57 8.09 -2.39 -0.02 2.56 16 32 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 33 H 0.08 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 35 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.06 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -64.69 332.11 5.34 -59.35 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.03 Total: 15.52 kcal Atomic # 6 Polarization: -42.29 SS G_CDS: 5.20 Total: -37.09 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.71 Total: -73.42 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.21 Total: -10.35 kcal Total: -64.69 5.34 -59.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596361467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.377 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds