Wall clock time and date at job start Mon Mar 30 2020 06:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 C 1.50700 * 109.46745 * 120.00097 * 2 1 3 5 5 C 1.33634 * 126.03921 * 120.01972 * 4 2 1 6 6 N 1.31785 * 114.50317 * 179.71242 * 5 4 2 7 7 C 1.29029 * 117.12139 * 0.47479 * 6 5 4 8 8 C 1.50696 * 124.91534 * 179.81061 * 7 6 5 9 9 N 1.46898 * 109.47016 * 89.69394 * 8 7 6 10 10 C 1.47480 * 111.00405 * 265.97353 * 9 8 7 11 11 C 1.53515 * 87.93275 * 221.29694 * 10 9 8 12 12 C 1.50706 * 114.34296 * 139.67863 * 11 10 9 13 13 H 1.08001 * 119.99879 * 266.07428 * 12 11 10 14 14 C 1.37870 * 119.99785 * 86.07863 * 12 11 10 15 15 N 1.31526 * 120.00082 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47114 * 89.99892 * 16 14 12 18 18 H 1.48501 * 109.47227 * 209.99878 * 16 14 12 19 19 H 1.48503 * 109.47099 * 329.99887 * 16 14 12 20 20 C 1.47486 * 110.99952 * 169.99989 * 9 8 7 21 21 S 1.70978 * 110.16752 * 359.54622 * 7 6 5 22 22 H 1.08999 * 109.47459 * 300.00198 * 1 2 3 23 23 H 1.09003 * 109.47022 * 60.00200 * 1 2 3 24 24 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46765 * 239.99661 * 2 1 3 26 26 H 1.08993 * 109.47205 * 60.00102 * 3 2 1 27 27 H 1.09003 * 109.46449 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47137 * 299.99729 * 3 2 1 29 29 H 1.08003 * 122.74622 * 359.96411 * 5 4 2 30 30 H 1.09001 * 109.47148 * 329.69520 * 8 7 6 31 31 H 1.09005 * 109.47175 * 209.69730 * 8 7 6 32 32 H 1.09005 * 113.47310 * 336.06042 * 10 9 8 33 33 H 1.08990 * 113.48150 * 106.52863 * 10 9 8 34 34 H 1.08994 * 114.17159 * 272.37520 * 11 10 9 35 35 H 0.96998 * 119.99911 * 180.02562 * 15 14 12 36 36 H 1.09005 * 113.47586 * 253.47470 * 20 9 8 37 37 H 1.08997 * 113.47701 * 23.87649 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8040 -1.8013 1.2486 6 7 3.1149 -2.2309 2.4550 7 6 2.6406 -1.5686 3.4556 8 6 2.8804 -1.9057 4.9047 9 7 4.0891 -1.2155 5.3744 10 6 5.2746 -2.0846 5.2540 11 6 5.7275 -1.5627 6.6249 12 6 6.3208 -2.6155 7.5253 13 1 5.6957 -3.1281 8.2416 14 6 7.6614 -2.9241 7.4348 15 7 8.4225 -2.3002 6.5622 16 14 8.3970 -4.2285 8.5513 17 1 8.3015 -5.5557 7.8920 18 1 9.8230 -3.9080 8.8144 19 1 7.6515 -4.2588 9.8353 20 6 4.2258 -1.3264 6.8387 21 16 1.7066 -0.2488 2.8995 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6766 1.9563 0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.1482 -2.2884 0.3482 30 1 3.0127 -2.9825 5.0101 31 1 2.0247 -1.5849 5.4988 32 1 5.0349 -3.1480 5.2518 33 1 5.9406 -1.8002 4.4395 34 1 6.3211 -0.6496 6.5809 35 1 9.3656 -2.5176 6.4983 36 1 4.0029 -0.3994 7.3671 37 1 3.7054 -2.1868 7.2594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597204191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:17 Heat of formation + Delta-G solvation = 65.304553 kcal Electronic energy + Delta-G solvation = -17483.811763 eV Core-core repulsion = 14774.578340 eV Total energy + Delta-G solvation = -2709.233423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.70471 -38.73671 -35.88928 -32.84342 -31.20430 -28.42612 -27.38731 -26.27769 -24.77591 -24.16013 -22.15881 -21.49000 -19.27902 -18.60544 -17.55881 -16.64694 -15.70735 -15.09465 -14.53990 -14.41416 -14.35202 -14.10508 -13.83222 -13.59315 -13.06501 -12.78011 -12.44080 -11.94894 -11.81007 -11.67240 -11.52182 -11.44080 -11.22272 -10.96813 -10.84365 -10.64036 -10.30830 -9.87038 -9.35028 -9.31544 -9.02403 -8.95786 -8.57064 -8.41047 -8.07040 -6.04309 -4.09222 0.88572 1.51787 1.96858 3.03963 3.30079 3.37046 3.39616 4.31372 4.41659 4.57501 4.69024 4.91042 5.06520 5.16029 5.26162 5.31081 5.37478 5.48183 5.56056 5.58542 5.74144 5.80211 5.82803 5.99528 6.03776 6.06798 6.29051 6.34188 6.48518 6.65144 6.68649 7.12239 7.19703 7.72291 7.88511 7.99927 8.01805 8.36968 8.93832 9.55874 11.05304 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.003770 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.919276 B = 7424.484902 C = 7577.431179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.015 4.015 3 C -0.147 4.147 4 C -0.231 4.231 5 C 0.039 3.961 6 N -0.472 5.472 7 C 0.081 3.919 8 C 0.090 3.910 9 N -0.480 5.480 10 C 0.013 3.987 11 C 0.042 3.958 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.004 4.004 21 S 0.124 5.876 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.168 0.832 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.386 4.847 -11.434 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.205 4.205 4 C -0.353 4.353 5 C -0.112 4.112 6 N -0.186 5.186 7 C -0.198 4.198 8 C -0.042 4.042 9 N -0.204 5.204 10 C -0.116 4.116 11 C 0.023 3.977 12 C -0.555 4.555 13 H 0.077 0.923 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.719 3.281 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.132 4.132 21 S 0.379 5.621 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.185 0.815 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.476 5.831 -11.215 19.982 hybrid contribution 0.773 -2.066 -0.042 2.207 sum -14.703 3.765 -11.257 18.896 Atomic orbital electron populations 1.21917 0.94154 1.02212 1.02102 1.19547 0.95663 0.95548 0.92796 1.21925 1.01767 0.94736 1.02084 1.25933 1.08603 1.02627 0.98116 1.21670 0.98761 0.95240 0.95579 1.66281 1.22369 1.31625 0.98322 1.26969 0.98137 0.94900 0.99781 1.21262 0.97249 0.99302 0.86407 1.68907 1.01110 1.40314 1.10065 1.24104 0.90634 0.94606 1.02214 1.20107 0.88982 0.97359 0.91299 1.21014 0.94016 1.20619 1.19889 0.92345 1.25023 0.97126 0.96189 0.95268 1.69976 1.06185 1.41239 1.34824 0.86607 0.78435 0.81943 0.81097 1.20627 1.21158 1.19809 1.24051 1.01634 0.99576 0.87961 1.83729 1.49053 1.30820 0.98480 0.92434 0.92005 0.92330 0.89440 0.92367 0.92100 0.92014 0.81472 0.90962 0.89832 0.92455 0.91889 0.91760 0.92847 0.91652 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.13 37.16 0.34 -0.84 16 2 C -0.01 -0.14 3.32 -91.77 -0.31 -0.44 16 3 C -0.15 -1.32 9.13 37.16 0.34 -0.98 16 4 C -0.23 -2.94 5.15 -35.92 -0.18 -3.12 16 5 C 0.04 0.57 11.22 -19.18 -0.22 0.35 16 6 N -0.47 -8.39 10.54 -11.86 -0.13 -8.52 16 7 C 0.08 1.37 6.97 -13.46 -0.09 1.27 16 8 C 0.09 1.56 5.39 -4.98 -0.03 1.54 16 9 N -0.48 -9.86 6.32 -246.06 -1.55 -11.41 16 10 C 0.01 0.31 7.28 -7.54 -0.05 0.26 16 11 C 0.04 1.05 3.76 -91.24 -0.34 0.71 16 12 C -0.52 -14.08 8.83 -34.44 -0.30 -14.39 16 13 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -25.82 13.26 55.43 0.74 -25.08 16 16 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 20 C 0.00 -0.08 7.25 -7.53 -0.05 -0.13 16 21 S 0.12 1.70 22.95 -107.50 -2.47 -0.77 16 22 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.17 2.02 8.06 -52.48 -0.42 1.59 16 30 H 0.07 1.30 7.30 -51.93 -0.38 0.92 16 31 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.06 1.38 7.38 -51.93 -0.38 1.00 16 33 H 0.06 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.06 1.78 8.11 -51.93 -0.42 1.36 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.13 7.87 -51.93 -0.41 0.72 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -29.75 322.86 -10.34 -40.09 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.78 Total: -1.30 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.00 Total: -14.01 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -0.94 Total: -45.01 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.47 Total: -0.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.75 -10.34 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.393 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds