Wall clock time and date at job start Mon Mar 30 2020 06:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 C 1.50700 * 109.46745 * 120.00097 * 2 1 3 5 5 C 1.33634 * 126.03921 * 120.01972 * 4 2 1 6 6 N 1.31785 * 114.50317 * 179.71242 * 5 4 2 7 7 C 1.29029 * 117.12139 * 0.47479 * 6 5 4 8 8 C 1.50696 * 124.91534 * 179.81061 * 7 6 5 9 9 N 1.46898 * 109.47016 * 89.69394 * 8 7 6 10 10 C 1.47480 * 111.00405 * 265.97353 * 9 8 7 11 11 C 1.53515 * 87.93275 * 221.29694 * 10 9 8 12 12 C 1.50706 * 114.34296 * 139.67863 * 11 10 9 13 13 H 1.08001 * 119.99879 * 266.07428 * 12 11 10 14 14 C 1.37870 * 119.99785 * 86.07863 * 12 11 10 15 15 N 1.31526 * 120.00082 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00200 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47114 * 89.99892 * 16 14 12 18 18 H 1.48501 * 109.47227 * 209.99878 * 16 14 12 19 19 H 1.48503 * 109.47099 * 329.99887 * 16 14 12 20 20 C 1.47486 * 110.99952 * 169.99989 * 9 8 7 21 21 S 1.70978 * 110.16752 * 359.54622 * 7 6 5 22 22 H 1.08999 * 109.47459 * 300.00198 * 1 2 3 23 23 H 1.09003 * 109.47022 * 60.00200 * 1 2 3 24 24 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46765 * 239.99661 * 2 1 3 26 26 H 1.08993 * 109.47205 * 60.00102 * 3 2 1 27 27 H 1.09003 * 109.46449 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47137 * 299.99729 * 3 2 1 29 29 H 1.08003 * 122.74622 * 359.96411 * 5 4 2 30 30 H 1.09001 * 109.47148 * 329.69520 * 8 7 6 31 31 H 1.09005 * 109.47175 * 209.69730 * 8 7 6 32 32 H 1.09005 * 113.47310 * 336.06042 * 10 9 8 33 33 H 1.08990 * 113.48150 * 106.52863 * 10 9 8 34 34 H 1.08994 * 114.17159 * 272.37520 * 11 10 9 35 35 H 0.96998 * 119.99911 * 180.02562 * 15 14 12 36 36 H 1.09005 * 113.47586 * 253.47470 * 20 9 8 37 37 H 1.08997 * 113.47701 * 23.87649 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.8040 -1.8013 1.2486 6 7 3.1149 -2.2309 2.4550 7 6 2.6406 -1.5686 3.4556 8 6 2.8804 -1.9057 4.9047 9 7 4.0891 -1.2155 5.3744 10 6 5.2746 -2.0846 5.2540 11 6 5.7275 -1.5627 6.6249 12 6 6.3208 -2.6155 7.5253 13 1 5.6957 -3.1281 8.2416 14 6 7.6614 -2.9241 7.4348 15 7 8.4225 -2.3002 6.5622 16 14 8.3970 -4.2285 8.5513 17 1 8.3015 -5.5557 7.8920 18 1 9.8230 -3.9080 8.8144 19 1 7.6515 -4.2588 9.8353 20 6 4.2258 -1.3264 6.8387 21 16 1.7066 -0.2488 2.8995 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.6766 1.9563 0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 3.1482 -2.2884 0.3482 30 1 3.0127 -2.9825 5.0101 31 1 2.0247 -1.5849 5.4988 32 1 5.0349 -3.1480 5.2518 33 1 5.9406 -1.8002 4.4395 34 1 6.3211 -0.6496 6.5809 35 1 9.3656 -2.5176 6.4983 36 1 4.0029 -0.3994 7.3671 37 1 3.7054 -2.1868 7.2594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597204191.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:16 Heat of formation + Delta-G solvation = 45.949122 kcal Electronic energy + Delta-G solvation = -17484.651078 eV Core-core repulsion = 14774.578340 eV Total energy + Delta-G solvation = -2710.072738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.05626 -40.28941 -36.73550 -34.83050 -32.70994 -29.80880 -28.04087 -27.93917 -26.58079 -25.69165 -23.69511 -22.36216 -20.56372 -20.36319 -18.73764 -18.57030 -16.86295 -16.82190 -16.26255 -15.98271 -15.44793 -15.18714 -15.08956 -14.87829 -14.17547 -14.03183 -13.76781 -13.44241 -13.12140 -13.07107 -12.86883 -12.66291 -12.45700 -12.38411 -12.14995 -12.10386 -11.74684 -11.64782 -11.24235 -10.91750 -10.55739 -10.49909 -10.14543 -9.83792 -9.66307 -8.15759 -6.27600 -0.25911 0.41656 0.83205 1.43053 1.43165 1.54201 1.86120 2.42356 3.10083 3.13462 3.48069 3.73390 3.85553 3.97052 4.16744 4.20756 4.34024 4.45533 4.51862 4.53595 4.62702 4.67170 4.76115 4.80196 4.93714 4.94353 4.99472 5.08525 5.19744 5.25793 5.33559 5.34668 5.37923 5.61174 5.83098 6.23253 6.29659 6.82551 6.84689 7.41352 8.94271 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043339 B = 0.003770 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.919276 B = 7424.484902 C = 7577.431179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.017 4.017 3 C -0.147 4.147 4 C -0.212 4.212 5 C 0.011 3.989 6 N -0.505 5.505 7 C 0.039 3.961 8 C 0.092 3.908 9 N -0.478 5.478 10 C 0.027 3.973 11 C 0.022 3.978 12 C -0.530 4.530 13 H 0.064 0.936 14 C 0.012 3.988 15 N -0.924 5.924 16 Si 0.960 3.040 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.261 1.261 20 C 0.014 3.986 21 S 0.165 5.835 22 H 0.053 0.947 23 H 0.083 0.917 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.186 0.814 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.030 0.970 35 H 0.262 0.738 36 H 0.084 0.916 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.378 5.144 -11.880 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 C -0.205 4.205 4 C -0.333 4.333 5 C -0.139 4.139 6 N -0.220 5.220 7 C -0.238 4.238 8 C -0.040 4.040 9 N -0.201 5.201 10 C -0.102 4.102 11 C 0.003 3.997 12 C -0.568 4.568 13 H 0.083 0.917 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.785 3.215 17 H -0.202 1.202 18 H -0.210 1.210 19 H -0.185 1.185 20 C -0.114 4.114 21 S 0.419 5.581 22 H 0.072 0.928 23 H 0.102 0.898 24 H 0.075 0.925 25 H 0.122 0.878 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.104 0.896 29 H 0.203 0.797 30 H 0.081 0.919 31 H 0.131 0.869 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -17.490 6.129 -11.646 21.888 hybrid contribution 1.313 -2.069 -0.025 2.450 sum -16.177 4.060 -11.671 20.357 Atomic orbital electron populations 1.21910 0.92715 1.02432 1.03065 1.19769 0.96762 0.95606 0.91652 1.21935 1.01013 0.94432 1.03076 1.26469 1.06452 1.01457 0.98971 1.21985 1.00125 0.96551 0.95281 1.66243 1.23150 1.33002 0.99607 1.26820 1.00512 0.97080 0.99366 1.21251 0.96468 0.98541 0.87692 1.68790 1.01472 1.39873 1.10005 1.23768 0.91886 0.94443 1.00146 1.20048 0.91567 0.95784 0.92297 1.21393 0.94488 1.20838 1.20049 0.91742 1.25885 0.97727 0.98378 0.96731 1.70116 1.06418 1.43061 1.36692 0.85527 0.77521 0.79000 0.79452 1.20246 1.21003 1.18520 1.23879 0.98052 1.01066 0.88427 1.83476 1.47282 1.28546 0.98754 0.92819 0.89768 0.92499 0.87756 0.92914 0.93310 0.89568 0.79716 0.91944 0.86874 0.93273 0.94977 0.95154 0.92909 0.89718 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.13 71.98 0.66 -1.20 16 2 C -0.02 -0.27 3.32 -11.54 -0.04 -0.31 16 3 C -0.15 -2.24 9.13 71.98 0.66 -1.58 16 4 C -0.21 -5.02 5.15 24.64 0.13 -4.90 16 5 C 0.01 0.31 11.22 83.65 0.94 1.25 16 6 N -0.50 -18.05 10.54 -191.45 -2.02 -20.07 16 7 C 0.04 1.32 6.97 88.52 0.62 1.94 16 8 C 0.09 3.15 5.39 85.56 0.46 3.61 16 9 N -0.48 -19.65 6.32 -932.40 -5.89 -25.54 16 10 C 0.03 1.33 7.28 83.58 0.61 1.94 16 11 C 0.02 1.15 3.76 -11.19 -0.04 1.11 16 12 C -0.53 -29.18 8.83 25.60 0.23 -28.95 16 13 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 14 C 0.01 0.67 5.46 84.65 0.46 1.14 16 15 N -0.92 -55.53 13.26 21.45 0.28 -55.24 16 16 Si 0.96 43.71 29.54 68.60 2.03 45.74 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.01 0.58 7.25 83.58 0.61 1.18 16 21 S 0.16 4.25 22.95 -56.49 -1.30 2.96 16 22 H 0.05 0.74 8.07 -2.39 -0.02 0.72 16 23 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 26 H 0.05 0.86 8.07 -2.39 -0.02 0.84 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 29 H 0.19 4.31 8.06 -2.91 -0.02 4.29 16 30 H 0.06 2.25 7.30 -2.39 -0.02 2.23 16 31 H 0.11 3.14 8.08 -2.38 -0.02 3.12 16 32 H 0.05 2.46 7.38 -2.38 -0.02 2.44 16 33 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.03 1.76 8.11 -2.39 -0.02 1.74 16 35 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 36 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 37 H 0.07 2.71 7.87 -2.39 -0.02 2.69 16 Total: -1.00 -65.66 322.86 -0.57 -66.23 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 1.04 Total: 10.71 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.28 Total: -24.78 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -7.62 Total: -100.85 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.96 kcal Total: -65.66 -0.57 -66.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597204191.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.179 kcal (2) G-P(sol) polarization free energy of solvation -65.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds