Wall clock time and date at job start Mon Mar 30 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29037 * 124.91501 * 2 1 4 4 C 1.31782 * 117.12205 * 180.22522 * 3 2 1 5 5 C 1.50702 * 122.74823 * 179.75431 * 4 3 2 6 6 N 1.46899 * 109.47084 * 269.71070 * 5 4 3 7 7 C 1.46895 * 111.00240 * 189.99924 * 6 5 4 8 8 C 1.50696 * 109.47449 * 162.35165 * 7 6 5 9 9 H 1.07999 * 120.00144 * 354.35071 * 8 7 6 10 10 C 1.37875 * 120.00117 * 174.61484 * 8 7 6 11 11 N 1.31514 * 119.99865 * 359.73574 * 10 8 7 12 12 Si 1.86803 * 120.00152 * 179.72547 * 10 8 7 13 13 H 1.48502 * 109.46554 * 90.00341 * 12 10 8 14 14 H 1.48496 * 109.47338 * 210.00359 * 12 10 8 15 15 H 1.48494 * 109.47193 * 330.00891 * 12 10 8 16 16 C 1.46904 * 111.00100 * 66.04564 * 6 5 4 17 17 C 1.53004 * 117.49793 * 265.92864 * 16 6 5 18 18 C 1.52997 * 117.49867 * 197.30661 * 16 6 5 19 19 C 1.33646 * 114.50068 * 359.48464 * 4 3 2 20 20 C 1.50695 * 126.03610 * 180.26361 * 19 4 3 21 21 S 1.70975 * 124.91878 * 179.69477 * 2 1 3 22 22 H 1.09005 * 109.46724 * 180.32512 * 1 2 3 23 23 H 1.08997 * 109.47166 * 300.32608 * 1 2 3 24 24 H 1.08998 * 109.46995 * 60.32971 * 1 2 3 25 25 H 1.08996 * 109.47057 * 149.71081 * 5 4 3 26 26 H 1.09003 * 109.46951 * 29.71233 * 5 4 3 27 27 H 1.09000 * 109.46756 * 42.35466 * 7 6 5 28 28 H 1.09003 * 109.47310 * 282.35694 * 7 6 5 29 29 H 0.97002 * 119.99599 * 179.97438 * 11 10 8 30 30 H 1.09006 * 115.54852 * 51.63188 * 16 6 5 31 31 H 1.08999 * 117.49929 * 0.02562 * 17 16 6 32 32 H 1.08997 * 117.49787 * 145.01957 * 17 16 6 33 33 H 1.08998 * 117.49534 * 214.97656 * 18 16 6 34 34 H 1.08996 * 117.50175 * 359.97438 * 18 16 6 35 35 H 1.09004 * 109.47040 * 90.00364 * 20 19 4 36 36 H 1.08996 * 109.47580 * 210.00453 * 20 19 4 37 37 H 1.09000 * 109.47581 * 330.01045 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0046 5 6 4.5307 2.0247 -0.0106 6 7 4.8490 2.3895 -1.3975 7 6 5.9717 3.3354 -1.4487 8 6 6.5492 3.3550 -2.8405 9 1 6.1858 2.6628 -3.5857 10 6 7.5452 4.2527 -3.1610 11 7 7.9878 5.0956 -2.2536 12 14 8.2665 4.2718 -4.8841 13 1 7.4904 5.2092 -5.7351 14 1 9.6824 4.7151 -4.8232 15 1 8.1998 2.9063 -5.4637 16 6 3.6694 2.9349 -2.0824 17 6 2.8138 1.9633 -2.8978 18 6 3.7008 2.9856 -3.6113 19 6 3.9354 -0.4006 0.0022 20 6 5.3574 -0.8993 0.0048 21 16 2.4857 -1.4019 0.0075 22 1 -0.3633 -1.0277 0.0058 23 1 -0.3633 0.5189 0.8870 24 1 -0.3633 0.5087 -0.8929 25 1 5.4431 1.7250 0.5048 26 1 4.0905 2.8820 0.4987 27 1 6.7403 3.0256 -0.7407 28 1 5.6184 4.3331 -1.1879 29 1 8.6888 5.7269 -2.4791 30 1 3.1560 3.7437 -1.5624 31 1 3.1259 0.9193 -2.9257 32 1 1.7372 2.1326 -2.9143 33 1 3.2076 3.8276 -4.0970 34 1 4.5967 2.6147 -4.1089 35 1 5.7003 -1.0141 1.0331 36 1 5.4058 -1.8620 -0.5039 37 1 5.9949 -0.1825 -0.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686012861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:55 Heat of formation + Delta-G solvation = 72.150289 kcal Electronic energy + Delta-G solvation = -18381.893057 eV Core-core repulsion = 15672.956487 eV Total energy + Delta-G solvation = -2708.936570 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.79779 -37.28954 -34.01556 -33.08546 -32.00367 -30.17330 -28.06091 -25.73748 -24.24289 -22.37039 -22.12248 -21.47958 -19.51014 -18.51504 -17.65946 -16.45695 -15.12301 -14.99199 -14.59033 -14.46676 -14.18504 -13.57650 -13.35653 -13.21151 -13.09704 -12.59038 -12.19299 -12.12283 -12.02351 -11.88855 -11.33764 -11.24769 -10.96517 -10.76875 -10.64845 -10.61837 -9.91310 -9.50900 -9.35242 -9.10568 -9.06716 -8.95910 -8.38755 -8.27111 -7.28073 -5.98831 -3.98547 0.96870 1.55421 1.93850 3.08286 3.33456 3.39834 3.43504 4.27737 4.45617 4.73427 4.93434 5.11540 5.25220 5.34994 5.37025 5.40878 5.42863 5.73115 5.77704 5.79693 5.84105 5.88258 6.08508 6.15027 6.26328 6.32197 6.34499 6.49921 6.55490 6.77537 7.04612 7.21131 7.41781 7.88164 8.05904 8.12403 8.24209 8.56092 9.08228 9.64324 11.11941 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.005379 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.551352 B = 5204.538871 C = 5531.232728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.038 3.962 3 N -0.452 5.452 4 C 0.087 3.913 5 C 0.130 3.870 6 N -0.505 5.505 7 C 0.196 3.804 8 C -0.496 4.496 9 H 0.068 0.932 10 C 0.054 3.946 11 N -0.901 5.901 12 Si 0.894 3.106 13 H -0.282 1.282 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.041 3.959 17 C -0.173 4.173 18 C -0.157 4.157 19 C -0.201 4.201 20 C -0.076 4.076 21 S 0.075 5.925 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.026 0.974 28 H -0.002 1.002 29 H 0.260 0.740 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -11.809 4.945 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.241 4.241 3 N -0.167 5.167 4 C -0.044 4.044 5 C -0.001 4.001 6 N -0.230 5.230 7 C 0.071 3.929 8 C -0.535 4.535 9 H 0.086 0.914 10 C -0.146 4.146 11 N -0.541 5.541 12 Si 0.722 3.278 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.068 4.068 17 C -0.211 4.211 18 C -0.194 4.194 19 C -0.322 4.322 20 C -0.135 4.135 21 S 0.329 5.671 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.016 0.984 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.044 -12.631 4.742 18.086 hybrid contribution 0.736 1.579 -0.482 1.807 sum -11.309 -11.052 4.259 16.376 Atomic orbital electron populations 1.20331 0.85799 1.02865 1.04057 1.26745 1.01179 0.90735 1.05399 1.66047 1.04797 1.31200 1.14610 1.20117 0.89556 0.94005 1.00762 1.20530 0.94718 0.92548 0.92319 1.61951 1.05507 1.44621 1.10882 1.19731 0.86474 0.88645 0.98017 1.21215 1.18441 1.17437 0.96390 0.91425 1.24965 0.96900 0.95616 0.97154 1.69958 1.29240 1.21347 1.33538 0.86565 0.78247 0.78294 0.84732 1.20781 1.21377 1.19841 1.21906 0.93942 0.97907 0.93085 1.22806 0.95700 0.96288 1.06259 1.23064 1.01593 0.99991 0.94715 1.25576 0.99654 0.95151 1.11791 1.20270 0.89155 1.01803 1.02305 1.83685 0.99013 1.13627 1.70777 0.90780 0.89912 0.89747 0.89734 0.94203 0.95630 0.98364 0.93050 0.91392 0.90035 0.90643 0.90283 0.87019 0.91205 0.91646 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.47 36.00 0.38 -0.29 16 2 C 0.04 0.52 7.39 -13.45 -0.10 0.42 16 3 N -0.45 -7.54 9.71 -8.05 -0.08 -7.61 16 4 C 0.09 1.49 5.17 -84.22 -0.44 1.05 16 5 C 0.13 2.47 4.89 -4.98 -0.02 2.44 16 6 N -0.50 -10.97 4.57 -229.52 -1.05 -12.02 16 7 C 0.20 5.02 4.75 -4.98 -0.02 5.00 16 8 C -0.50 -13.58 8.02 -34.44 -0.28 -13.86 16 9 H 0.07 1.84 5.51 -52.49 -0.29 1.55 16 10 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 11 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 12 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C 0.04 0.85 4.33 -67.71 -0.29 0.56 16 17 C -0.17 -3.19 9.17 -26.73 -0.25 -3.44 16 18 C -0.16 -3.15 9.39 -26.73 -0.25 -3.40 16 19 C -0.20 -3.06 6.59 -35.92 -0.24 -3.29 16 20 C -0.08 -1.02 9.81 36.00 0.35 -0.67 16 21 S 0.07 0.95 23.17 -107.50 -2.49 -1.54 16 22 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.08 1.52 7.05 -51.93 -0.37 1.16 16 26 H 0.04 0.78 8.12 -51.93 -0.42 0.36 16 27 H 0.03 0.68 7.77 -51.93 -0.40 0.28 16 28 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.11 2.47 5.63 -51.93 -0.29 2.18 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.47 7.43 -51.93 -0.39 1.08 16 LS Contribution 318.15 15.07 4.79 4.79 Total: -1.00 -30.07 318.15 -9.87 -39.95 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.51 Total: -0.22 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.25 Total: -14.06 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -0.39 Total: -45.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.07 -9.87 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686012861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.096 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds