Wall clock time and date at job start Mon Mar 30 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29037 * 124.91501 * 2 1 4 4 C 1.31782 * 117.12205 * 180.22522 * 3 2 1 5 5 C 1.50702 * 122.74823 * 179.75431 * 4 3 2 6 6 N 1.46899 * 109.47084 * 269.71070 * 5 4 3 7 7 C 1.46895 * 111.00240 * 189.99924 * 6 5 4 8 8 C 1.50696 * 109.47449 * 162.35165 * 7 6 5 9 9 H 1.07999 * 120.00144 * 354.35071 * 8 7 6 10 10 C 1.37875 * 120.00117 * 174.61484 * 8 7 6 11 11 N 1.31514 * 119.99865 * 359.73574 * 10 8 7 12 12 Si 1.86803 * 120.00152 * 179.72547 * 10 8 7 13 13 H 1.48502 * 109.46554 * 90.00341 * 12 10 8 14 14 H 1.48496 * 109.47338 * 210.00359 * 12 10 8 15 15 H 1.48494 * 109.47193 * 330.00891 * 12 10 8 16 16 C 1.46904 * 111.00100 * 66.04564 * 6 5 4 17 17 C 1.53004 * 117.49793 * 265.92864 * 16 6 5 18 18 C 1.52997 * 117.49867 * 197.30661 * 16 6 5 19 19 C 1.33646 * 114.50068 * 359.48464 * 4 3 2 20 20 C 1.50695 * 126.03610 * 180.26361 * 19 4 3 21 21 S 1.70975 * 124.91878 * 179.69477 * 2 1 3 22 22 H 1.09005 * 109.46724 * 180.32512 * 1 2 3 23 23 H 1.08997 * 109.47166 * 300.32608 * 1 2 3 24 24 H 1.08998 * 109.46995 * 60.32971 * 1 2 3 25 25 H 1.08996 * 109.47057 * 149.71081 * 5 4 3 26 26 H 1.09003 * 109.46951 * 29.71233 * 5 4 3 27 27 H 1.09000 * 109.46756 * 42.35466 * 7 6 5 28 28 H 1.09003 * 109.47310 * 282.35694 * 7 6 5 29 29 H 0.97002 * 119.99599 * 179.97438 * 11 10 8 30 30 H 1.09006 * 115.54852 * 51.63188 * 16 6 5 31 31 H 1.08999 * 117.49929 * 0.02562 * 17 16 6 32 32 H 1.08997 * 117.49787 * 145.01957 * 17 16 6 33 33 H 1.08998 * 117.49534 * 214.97656 * 18 16 6 34 34 H 1.08996 * 117.50175 * 359.97438 * 18 16 6 35 35 H 1.09004 * 109.47040 * 90.00364 * 20 19 4 36 36 H 1.08996 * 109.47580 * 210.00453 * 20 19 4 37 37 H 1.09000 * 109.47581 * 330.01045 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0046 5 6 4.5307 2.0247 -0.0106 6 7 4.8490 2.3895 -1.3975 7 6 5.9717 3.3354 -1.4487 8 6 6.5492 3.3550 -2.8405 9 1 6.1858 2.6628 -3.5857 10 6 7.5452 4.2527 -3.1610 11 7 7.9878 5.0956 -2.2536 12 14 8.2665 4.2718 -4.8841 13 1 7.4904 5.2092 -5.7351 14 1 9.6824 4.7151 -4.8232 15 1 8.1998 2.9063 -5.4637 16 6 3.6694 2.9349 -2.0824 17 6 2.8138 1.9633 -2.8978 18 6 3.7008 2.9856 -3.6113 19 6 3.9354 -0.4006 0.0022 20 6 5.3574 -0.8993 0.0048 21 16 2.4857 -1.4019 0.0075 22 1 -0.3633 -1.0277 0.0058 23 1 -0.3633 0.5189 0.8870 24 1 -0.3633 0.5087 -0.8929 25 1 5.4431 1.7250 0.5048 26 1 4.0905 2.8820 0.4987 27 1 6.7403 3.0256 -0.7407 28 1 5.6184 4.3331 -1.1879 29 1 8.6888 5.7269 -2.4791 30 1 3.1560 3.7437 -1.5624 31 1 3.1259 0.9193 -2.9257 32 1 1.7372 2.1326 -2.9143 33 1 3.2076 3.8276 -4.0970 34 1 4.5967 2.6147 -4.1089 35 1 5.7003 -1.0141 1.0331 36 1 5.4058 -1.8620 -0.5039 37 1 5.9949 -0.1825 -0.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686012861.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:55 Heat of formation + Delta-G solvation = 53.712724 kcal Electronic energy + Delta-G solvation = -18382.692570 eV Core-core repulsion = 15672.956487 eV Total energy + Delta-G solvation = -2709.736083 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.02768 -38.91674 -35.54803 -34.82480 -33.63379 -31.14464 -29.81640 -27.34478 -25.54146 -24.15055 -23.48359 -23.06828 -21.18122 -19.73221 -18.92653 -18.36682 -16.77777 -16.62711 -16.13618 -15.99273 -15.55370 -15.08344 -14.66614 -14.20295 -14.16907 -14.13048 -13.86066 -13.49491 -13.24373 -13.12664 -12.91491 -12.78501 -12.71157 -12.54886 -12.39323 -12.03560 -11.73176 -11.27342 -11.07315 -10.74721 -10.53001 -10.43196 -10.02540 -9.44943 -9.07935 -8.14561 -6.22011 -0.13070 0.49505 0.82802 1.42628 1.43077 1.54196 1.85738 2.43577 3.08934 3.16917 3.19884 3.37299 4.01523 4.08633 4.15522 4.22215 4.25208 4.46602 4.52180 4.61035 4.65589 4.73063 4.73619 4.80294 4.84021 5.03109 5.08860 5.09616 5.15401 5.20204 5.32648 5.36181 5.42250 5.77728 6.08891 6.36433 6.58724 6.92052 6.96602 7.45761 8.96492 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028992 B = 0.005379 C = 0.005061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.551352 B = 5204.538871 C = 5531.232728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.034 3.966 3 N -0.487 5.487 4 C 0.065 3.935 5 C 0.133 3.867 6 N -0.502 5.502 7 C 0.211 3.789 8 C -0.503 4.503 9 H 0.070 0.930 10 C 0.002 3.998 11 N -0.938 5.938 12 Si 0.962 3.038 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.264 1.264 16 C 0.020 3.980 17 C -0.133 4.133 18 C -0.163 4.163 19 C -0.217 4.217 20 C -0.074 4.074 21 S 0.140 5.860 22 H 0.101 0.899 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.024 0.976 27 H 0.006 0.994 28 H -0.037 1.037 29 H 0.262 0.738 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 -13.987 4.013 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.245 4.245 3 N -0.202 5.202 4 C -0.066 4.066 5 C 0.003 3.997 6 N -0.226 5.226 7 C 0.085 3.915 8 C -0.541 4.541 9 H 0.088 0.912 10 C -0.195 4.195 11 N -0.579 5.579 12 Si 0.787 3.213 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.188 1.188 16 C -0.089 4.089 17 C -0.171 4.171 18 C -0.200 4.200 19 C -0.339 4.339 20 C -0.133 4.133 21 S 0.395 5.605 22 H 0.120 0.880 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.103 0.897 26 H 0.042 0.958 27 H 0.024 0.976 28 H -0.020 1.020 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.685 -14.836 3.813 20.541 hybrid contribution 1.148 2.178 -0.111 2.465 sum -12.537 -12.658 3.702 18.196 Atomic orbital electron populations 1.20535 0.82972 1.04912 1.04693 1.27473 1.02893 0.90657 1.03438 1.66022 1.04647 1.32948 1.16571 1.19742 0.89771 0.93767 1.03283 1.20438 0.95571 0.93179 0.90534 1.61897 1.05128 1.42788 1.12806 1.19392 0.87433 0.87638 0.96994 1.21478 1.18409 1.17318 0.96928 0.91221 1.25825 0.97300 0.95192 1.01208 1.70094 1.29917 1.22181 1.35734 0.85489 0.77358 0.78693 0.79748 1.20120 1.21044 1.18835 1.21930 0.94356 0.99209 0.93382 1.22693 0.96365 0.95181 1.02852 1.23044 1.01634 1.01332 0.93972 1.25856 1.01665 0.95512 1.10847 1.20275 0.87972 1.01750 1.03322 1.83413 0.96229 1.11519 1.69342 0.88027 0.89043 0.89221 0.89724 0.95787 0.97575 1.01953 0.92960 0.92585 0.90491 0.88343 0.88802 0.88987 0.89452 0.89815 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.47 71.23 0.75 -0.37 16 2 C 0.03 0.83 7.39 88.52 0.65 1.48 16 3 N -0.49 -15.72 9.71 -179.39 -1.74 -17.46 16 4 C 0.07 2.23 5.17 41.52 0.21 2.45 16 5 C 0.13 5.30 4.89 85.56 0.42 5.71 16 6 N -0.50 -22.63 4.57 -880.06 -4.02 -26.65 16 7 C 0.21 11.40 4.75 85.56 0.41 11.81 16 8 C -0.50 -28.22 8.02 25.60 0.21 -28.01 16 9 H 0.07 3.83 5.51 -2.91 -0.02 3.82 16 10 C 0.00 0.11 5.46 84.65 0.46 0.58 16 11 N -0.94 -56.78 13.29 21.45 0.28 -56.50 16 12 Si 0.96 44.49 29.54 68.60 2.03 46.51 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 15 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 16 C 0.02 0.86 4.33 44.91 0.19 1.06 16 17 C -0.13 -4.74 9.17 30.60 0.28 -4.46 16 18 C -0.16 -6.49 9.39 30.59 0.29 -6.20 16 19 C -0.22 -6.35 6.59 24.64 0.16 -6.18 16 20 C -0.07 -1.91 9.81 71.23 0.70 -1.21 16 21 S 0.14 3.13 23.17 -56.49 -1.31 1.82 16 22 H 0.10 1.03 8.12 -2.38 -0.02 1.01 16 23 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.08 3.25 7.05 -2.39 -0.02 3.23 16 26 H 0.02 1.01 8.12 -2.39 -0.02 0.99 16 27 H 0.01 0.35 7.77 -2.39 -0.02 0.33 16 28 H -0.04 -2.25 8.03 -2.39 -0.02 -2.26 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 31 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 32 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 34 H 0.09 4.07 5.63 -2.39 -0.01 4.05 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 2.14 7.43 -2.39 -0.02 2.12 16 Total: -1.00 -66.03 318.15 1.02 -65.00 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.05 Total: 10.63 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 4.73 Total: -23.36 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -5.48 Total: -100.61 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Atomic # 16 Polarization: 3.13 SS G_CDS: -1.31 Total: 1.82 kcal Total: -66.03 1.02 -65.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686012861.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.713 kcal (2) G-P(sol) polarization free energy of solvation -66.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds