Wall clock time and date at job start Mon Mar 30 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46900 * 110.99503 * 274.99918 * 13 2 1 15 15 C 1.50700 * 109.46994 * 180.02562 * 14 13 2 16 16 C 1.33633 * 122.75381 * 95.02732 * 15 14 13 17 17 S 1.76202 * 107.92778 * 180.02562 * 16 15 14 18 18 C 1.70983 * 90.28008 * 359.97438 * 17 16 15 19 19 C 1.50700 * 124.91585 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49792 * 8.59153 * 19 18 17 21 21 C 1.52997 * 60.00303 * 252.51564 * 20 19 18 22 22 N 1.29030 * 110.16643 * 359.73549 * 18 17 16 23 23 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 24 24 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 25 25 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 27 27 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.00892 * 111.00616 * 151.04626 * 13 2 1 30 30 H 1.09000 * 109.47080 * 299.99348 * 14 13 2 31 31 H 1.08999 * 109.47391 * 59.99755 * 14 13 2 32 32 H 1.07997 * 126.03763 * 359.97438 * 16 15 14 33 33 H 1.08996 * 115.55287 * 154.30609 * 19 18 17 34 34 H 1.08996 * 117.49761 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49400 * 145.02335 * 20 19 18 36 36 H 1.09002 * 117.49661 * 252.51340 * 21 20 19 37 37 H 1.08993 * 117.51886 * 107.47931 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0197 -0.6927 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5886 -0.5218 3.5556 16 6 3.8754 -0.5258 3.9158 17 16 4.0287 -1.5092 5.3698 18 6 2.3468 -1.8166 5.3493 19 6 1.6117 -2.6598 6.3590 20 6 2.3885 -3.1206 7.5941 21 6 2.0321 -4.1247 6.4960 22 7 1.7973 -1.2171 4.3475 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6054 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 2.6101 -1.9094 -3.2568 29 1 2.9173 -1.1206 1.0287 30 1 2.7590 1.0459 2.1182 31 1 1.0871 0.6161 2.5525 32 1 4.6797 -0.0169 3.4053 33 1 0.5550 -2.4254 6.4872 34 1 3.4311 -2.8135 7.6764 35 1 1.8428 -3.1891 8.5352 36 1 1.2518 -4.8537 6.7148 37 1 2.8399 -4.4784 5.8556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708186650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:45 Heat of formation + Delta-G solvation = 53.371148 kcal Electronic energy + Delta-G solvation = -17455.677307 eV Core-core repulsion = 14745.926413 eV Total energy + Delta-G solvation = -2709.750894 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89850 -37.51524 -36.48485 -33.15278 -31.48290 -29.19439 -27.06658 -25.98465 -24.63587 -22.84338 -22.73453 -21.15171 -19.74961 -19.56278 -17.67254 -16.74056 -16.23288 -15.17936 -15.13722 -14.75658 -14.16518 -13.82434 -13.71359 -13.34472 -12.83394 -12.63347 -12.41918 -12.18480 -11.88279 -11.45708 -11.33170 -11.16298 -10.99400 -10.86932 -10.79356 -10.73891 -10.42826 -10.14030 -9.57252 -9.51610 -9.28917 -8.63085 -8.54775 -8.35390 -7.71488 -6.38004 -4.07737 0.73597 1.37266 1.76260 2.80907 3.40766 3.42382 3.55122 3.61136 3.87882 4.49531 4.52094 4.64317 4.79729 4.98225 5.10131 5.29607 5.32505 5.41562 5.48594 5.53989 5.71803 5.77043 5.79081 5.83874 6.03979 6.13867 6.23407 6.25315 6.46195 6.79354 6.85531 7.27866 7.40955 7.86204 7.92429 8.12931 8.21051 8.41693 8.85855 9.64805 11.02694 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.004560 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.607175 B = 6138.886464 C = 6802.111093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 H 0.032 0.968 4 C 0.007 3.993 5 C -0.605 4.605 6 H 0.045 0.955 7 C 0.018 3.982 8 N -0.910 5.910 9 Si 1.066 2.934 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.288 1.288 13 N -0.674 5.674 14 C 0.132 3.868 15 C 0.088 3.912 16 C -0.254 4.254 17 S 0.101 5.899 18 C 0.076 3.924 19 C -0.082 4.082 20 C -0.171 4.171 21 C -0.159 4.159 22 N -0.450 5.450 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.013 0.987 27 H 0.017 0.983 28 H 0.270 0.730 29 H 0.355 0.645 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.177 0.823 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 0.055 20.844 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.014 4.014 3 H 0.050 0.950 4 C -0.030 4.030 5 C -0.643 4.643 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.545 5.545 9 Si 0.894 3.106 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.309 5.309 14 C 0.000 4.000 15 C -0.044 4.044 16 C -0.394 4.394 17 S 0.356 5.644 18 C -0.202 4.202 19 C -0.104 4.104 20 C -0.209 4.209 21 C -0.198 4.198 22 N -0.164 5.164 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.194 0.806 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.133 -0.939 20.649 20.671 hybrid contribution -0.804 1.503 -0.136 1.710 sum -0.937 0.564 20.514 20.543 Atomic orbital electron populations 1.21810 0.96515 1.01457 0.99641 1.21475 0.93411 0.95777 0.90701 0.95038 1.19402 0.96505 0.95636 0.91476 1.21976 0.91930 1.38866 1.11524 0.93709 1.25781 1.06742 0.93407 0.92697 1.70767 1.10541 1.39219 1.34023 0.83591 0.74582 0.76195 0.76225 1.20698 1.21555 1.21481 1.60530 1.34922 1.31689 1.03709 1.20457 1.00396 0.92384 0.86807 1.20270 0.88541 0.98174 0.97430 1.26911 1.01476 1.09038 1.01964 1.83673 1.10027 1.45677 1.25030 1.26083 0.93964 1.01952 0.98180 1.20377 0.99465 0.95238 0.95334 1.23135 1.01035 1.03378 0.93332 1.23138 1.03916 0.91187 1.01573 1.65961 1.38221 1.08959 1.03252 0.94143 0.93330 0.92629 0.96878 0.96466 0.91939 0.82365 0.94041 0.90070 0.80553 0.85033 0.88388 0.87394 0.87489 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.42 37.16 0.35 -2.20 16 2 C 0.10 2.05 2.59 -67.71 -0.18 1.87 16 3 H 0.03 0.68 7.80 -51.93 -0.41 0.28 16 4 C 0.01 0.18 3.88 -27.88 -0.11 0.07 16 5 C -0.60 -16.87 8.12 -34.44 -0.28 -17.15 16 6 H 0.04 1.22 7.49 -52.49 -0.39 0.82 16 7 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 8 N -0.91 -27.91 13.65 55.43 0.76 -27.15 16 9 Si 1.07 25.17 29.90 -169.99 -5.08 20.08 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.67 -13.81 6.30 -107.99 -0.68 -14.49 16 14 C 0.13 2.29 5.92 -4.98 -0.03 2.26 16 15 C 0.09 1.46 6.25 -84.23 -0.53 0.93 16 16 C -0.25 -3.70 11.11 29.12 0.32 -3.38 16 17 S 0.10 1.23 21.94 -107.50 -2.36 -1.13 16 18 C 0.08 1.05 7.04 -13.46 -0.09 0.95 16 19 C -0.08 -0.86 6.33 -91.77 -0.58 -1.44 16 20 C -0.17 -1.29 10.01 -26.73 -0.27 -1.56 16 21 C -0.16 -1.36 10.23 -26.73 -0.27 -1.64 16 22 N -0.45 -7.53 10.53 -8.05 -0.08 -7.61 16 23 H 0.04 0.68 7.45 -51.93 -0.39 0.30 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 27 H 0.02 0.47 8.00 -51.93 -0.42 0.06 16 28 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 29 H 0.36 7.93 7.20 -39.30 -0.28 7.64 16 30 H 0.04 0.69 8.01 -51.93 -0.42 0.27 16 31 H 0.08 1.38 7.44 -51.93 -0.39 1.00 16 32 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 33 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.10 0.73 7.22 -51.93 -0.38 0.36 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -31.41 322.78 -9.87 -41.28 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.53 Total: 5.00 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: -1.76 Total: -20.85 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.01 Total: -49.25 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.36 Total: -1.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.41 -9.87 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708186650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.651 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds