Wall clock time and date at job start Mon Mar 30 2020 07:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46900 * 110.99503 * 274.99918 * 13 2 1 15 15 C 1.50700 * 109.46994 * 180.02562 * 14 13 2 16 16 C 1.33633 * 122.75381 * 95.02732 * 15 14 13 17 17 S 1.76202 * 107.92778 * 180.02562 * 16 15 14 18 18 C 1.70983 * 90.28008 * 359.97438 * 17 16 15 19 19 C 1.50700 * 124.91585 * 180.02562 * 18 17 16 20 20 C 1.53005 * 117.49792 * 8.59153 * 19 18 17 21 21 C 1.52997 * 60.00303 * 252.51564 * 20 19 18 22 22 N 1.29030 * 110.16643 * 359.73549 * 18 17 16 23 23 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 24 24 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 25 25 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 27 27 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.00892 * 111.00616 * 151.04626 * 13 2 1 30 30 H 1.09000 * 109.47080 * 299.99348 * 14 13 2 31 31 H 1.08999 * 109.47391 * 59.99755 * 14 13 2 32 32 H 1.07997 * 126.03763 * 359.97438 * 16 15 14 33 33 H 1.08996 * 115.55287 * 154.30609 * 19 18 17 34 34 H 1.08996 * 117.49761 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49400 * 145.02335 * 20 19 18 36 36 H 1.09002 * 117.49661 * 252.51340 * 21 20 19 37 37 H 1.08993 * 117.51886 * 107.47931 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 7 2.0197 -0.6927 1.1993 14 6 2.0825 0.2224 2.3468 15 6 2.5886 -0.5218 3.5556 16 6 3.8754 -0.5258 3.9158 17 16 4.0287 -1.5092 5.3698 18 6 2.3468 -1.8166 5.3493 19 6 1.6117 -2.6598 6.3590 20 6 2.3885 -3.1206 7.5941 21 6 2.0321 -4.1247 6.4960 22 7 1.7973 -1.2171 4.3475 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6054 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 2.6101 -1.9094 -3.2568 29 1 2.9173 -1.1206 1.0287 30 1 2.7590 1.0459 2.1182 31 1 1.0871 0.6161 2.5525 32 1 4.6797 -0.0169 3.4053 33 1 0.5550 -2.4254 6.4872 34 1 3.4311 -2.8135 7.6764 35 1 1.8428 -3.1891 8.5352 36 1 1.2518 -4.8537 6.7148 37 1 2.8399 -4.4784 5.8556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708186650.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:45 Heat of formation + Delta-G solvation = 33.478190 kcal Electronic energy + Delta-G solvation = -17456.539931 eV Core-core repulsion = 14745.926413 eV Total energy + Delta-G solvation = -2710.613518 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01139 -38.55181 -37.90147 -35.17232 -33.00061 -30.54763 -28.99196 -27.16764 -25.92338 -24.88946 -23.35199 -22.08579 -21.44241 -20.74248 -18.95704 -18.69812 -17.13279 -16.75163 -16.48991 -15.75801 -15.65946 -15.41497 -15.08027 -14.71049 -14.43682 -14.06787 -13.75219 -13.34882 -13.20786 -13.04084 -12.83189 -12.56981 -12.50635 -12.42472 -11.99574 -11.96114 -11.80708 -11.51884 -11.41982 -10.66751 -10.61829 -10.56157 -10.33483 -9.67995 -9.31107 -8.68497 -6.38970 -0.32187 0.35869 0.69093 1.50567 1.58786 1.67006 1.77487 2.55526 2.76787 3.03717 3.13907 3.46044 3.75708 3.83042 4.00516 4.09546 4.14984 4.24311 4.38178 4.42492 4.52694 4.57088 4.71766 4.72749 4.86656 4.90876 5.03130 5.03896 5.10399 5.14763 5.17071 5.24158 5.39351 5.94638 6.16365 6.21972 6.43740 6.57331 6.81482 7.43049 8.72268 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.004560 C = 0.004115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.607175 B = 6138.886464 C = 6802.111093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.103 3.897 3 H 0.031 0.969 4 C 0.012 3.988 5 C -0.610 4.610 6 H 0.051 0.949 7 C -0.036 4.036 8 N -0.938 5.938 9 Si 1.115 2.885 10 H -0.286 1.286 11 H -0.269 1.269 12 H -0.268 1.268 13 N -0.680 5.680 14 C 0.136 3.864 15 C 0.064 3.936 16 C -0.270 4.270 17 S 0.163 5.837 18 C 0.068 3.932 19 C -0.110 4.110 20 C -0.147 4.147 21 C -0.158 4.158 22 N -0.491 5.491 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.045 0.955 26 H -0.006 1.006 27 H -0.010 1.010 28 H 0.255 0.745 29 H 0.342 0.658 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.188 0.812 33 H 0.133 0.867 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.124 0.876 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 0.188 23.293 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.007 4.007 3 H 0.049 0.951 4 C -0.025 4.025 5 C -0.648 4.648 6 H 0.070 0.930 7 C -0.234 4.234 8 N -0.575 5.575 9 Si 0.936 3.064 10 H -0.211 1.211 11 H -0.194 1.194 12 H -0.193 1.193 13 N -0.313 5.313 14 C 0.005 3.995 15 C -0.067 4.067 16 C -0.409 4.409 17 S 0.418 5.582 18 C -0.210 4.210 19 C -0.132 4.132 20 C -0.185 4.185 21 C -0.196 4.196 22 N -0.205 5.205 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.013 0.987 27 H 0.008 0.992 28 H 0.064 0.936 29 H 0.161 0.839 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.205 0.795 33 H 0.150 0.850 34 H 0.119 0.881 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.046 -0.791 23.134 23.171 hybrid contribution -1.199 1.425 -0.798 2.026 sum -0.153 0.634 22.336 22.345 Atomic orbital electron populations 1.21722 0.94377 1.01332 1.01158 1.21333 0.95104 0.94922 0.89336 0.95056 1.19298 0.95847 0.94330 0.93046 1.22331 0.93035 1.38094 1.11337 0.93043 1.27351 1.11188 0.92567 0.92279 1.70906 1.09744 1.41369 1.35488 0.82967 0.69277 0.77376 0.76761 1.21118 1.19431 1.19341 1.60550 1.34049 1.32606 1.04060 1.20408 1.00812 0.92145 0.86161 1.20153 0.89445 0.99443 0.97697 1.27173 1.01177 1.09333 1.03258 1.83370 1.08184 1.43814 1.22794 1.26685 0.95322 1.01180 0.97770 1.20559 0.99839 0.96214 0.96627 1.23272 1.00973 1.00952 0.93276 1.23243 1.04079 0.90516 1.01808 1.65955 1.39420 1.10554 1.04620 0.92006 0.92398 0.93561 0.98743 0.99159 0.93553 0.83879 0.93245 0.89958 0.79451 0.84952 0.88109 0.84852 0.85747 0.89024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.42 71.98 0.68 -4.08 16 2 C 0.10 4.43 2.59 44.92 0.12 4.55 16 3 H 0.03 1.35 7.80 -2.39 -0.02 1.33 16 4 C 0.01 0.64 3.88 29.85 0.12 0.76 16 5 C -0.61 -34.37 8.12 25.60 0.21 -34.16 16 6 H 0.05 2.78 7.49 -2.91 -0.02 2.76 16 7 C -0.04 -2.09 5.46 84.65 0.46 -1.63 16 8 N -0.94 -58.82 13.65 21.45 0.29 -58.52 16 9 Si 1.11 50.08 29.90 68.60 2.05 52.13 16 10 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 13 N -0.68 -28.05 6.30 -495.57 -3.12 -31.17 16 14 C 0.14 4.70 5.92 85.56 0.51 5.21 16 15 C 0.06 2.12 6.25 41.52 0.26 2.38 16 16 C -0.27 -7.54 11.11 66.77 0.74 -6.79 16 17 S 0.16 3.64 21.94 -56.49 -1.24 2.40 16 18 C 0.07 1.78 7.04 88.52 0.62 2.41 16 19 C -0.11 -2.12 6.33 -11.54 -0.07 -2.19 16 20 C -0.15 -1.77 10.01 30.60 0.31 -1.47 16 21 C -0.16 -2.35 10.23 30.60 0.31 -2.03 16 22 N -0.49 -16.26 10.53 -179.40 -1.89 -18.15 16 23 H 0.06 2.02 7.45 -2.39 -0.02 2.00 16 24 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 26 H -0.01 -0.32 8.01 -2.39 -0.02 -0.34 16 27 H -0.01 -0.58 8.00 -2.39 -0.02 -0.60 16 28 H 0.26 16.30 7.22 -92.71 -0.67 15.63 16 29 H 0.34 15.47 7.20 -89.70 -0.65 14.82 16 30 H 0.05 1.61 8.01 -2.39 -0.02 1.59 16 31 H 0.08 2.77 7.44 -2.39 -0.02 2.76 16 32 H 0.19 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.10 1.17 7.22 -2.39 -0.02 1.16 16 35 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -68.60 322.78 0.87 -67.74 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.51 Total: 22.64 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 4.26 Total: -37.06 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -4.72 Total: -107.84 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.24 Total: 2.40 kcal Total: -68.60 0.87 -67.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708186650.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.214 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds