Wall clock time and date at job start Mon Mar 30 2020 07:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 14 14 C 1.46901 * 110.99913 * 85.00348 * 13 2 1 15 15 C 1.50703 * 109.47196 * 180.02562 * 14 13 2 16 16 C 1.33636 * 122.75279 * 95.01725 * 15 14 13 17 17 S 1.76204 * 107.92448 * 179.97438 * 16 15 14 18 18 C 1.70981 * 90.28184 * 0.02562 * 17 16 15 19 19 C 1.50693 * 124.91604 * 180.02562 * 18 17 16 20 20 C 1.53006 * 117.50069 * 8.59119 * 19 18 17 21 21 C 1.53002 * 60.00052 * 252.51426 * 20 19 18 22 22 N 1.29027 * 110.16615 * 359.72776 * 18 17 16 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 27 27 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99924 * 208.95338 * 13 2 1 30 30 H 1.09007 * 109.47248 * 299.99411 * 14 13 2 31 31 H 1.08990 * 109.47767 * 59.99672 * 14 13 2 32 32 H 1.08002 * 126.03913 * 0.02562 * 16 15 14 33 33 H 1.08995 * 115.55249 * 154.30403 * 19 18 17 34 34 H 1.08998 * 117.49446 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49969 * 145.02145 * 20 19 18 36 36 H 1.09003 * 117.49828 * 252.50694 * 21 20 19 37 37 H 1.09004 * 117.51878 * 107.48147 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 3.5763 -1.8362 3.3004 9 14 6.0920 -1.0603 2.4372 10 1 6.5836 -0.2899 1.2667 11 1 6.4861 -0.3641 3.6883 12 1 6.6862 -2.4211 2.4198 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 6 2.5872 -0.5217 -3.5561 16 6 1.7705 -1.0667 -4.4626 17 16 2.7659 -1.8321 -5.6988 18 6 4.1814 -1.3438 -4.8732 19 6 5.5885 -1.6355 -5.3269 20 6 5.7699 -2.2478 -6.7173 21 6 5.9948 -3.1037 -5.4692 22 7 3.8703 -0.6841 -3.8089 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 4.0607 -2.2430 4.0358 29 1 2.9172 -1.1205 -1.0287 30 1 1.0870 0.6164 -2.5525 31 1 2.7587 1.0462 -2.1183 32 1 0.6909 -1.0416 -4.4417 33 1 6.3484 -0.9342 -4.9824 34 1 4.8714 -2.4392 -7.3040 35 1 6.6493 -1.9492 -7.2879 36 1 7.0221 -3.3683 -5.2187 37 1 5.2443 -3.8587 -5.2343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708186651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:48 Heat of formation + Delta-G solvation = 57.004479 kcal Electronic energy + Delta-G solvation = -17502.641748 eV Core-core repulsion = 14793.048407 eV Total energy + Delta-G solvation = -2709.593341 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.87149 -37.45632 -36.34523 -32.85529 -31.44211 -29.25165 -27.36722 -25.90707 -24.68864 -22.84388 -22.68596 -21.11141 -19.69354 -19.33827 -17.52348 -16.32092 -16.19929 -15.32691 -14.99673 -14.62513 -14.26237 -14.11570 -13.70771 -13.38243 -12.77647 -12.40802 -11.99180 -11.87813 -11.77726 -11.59213 -11.45508 -11.21892 -10.95362 -10.88572 -10.76212 -10.58247 -10.46195 -10.19142 -9.53124 -9.27627 -9.22729 -9.03310 -8.57112 -8.35716 -7.65082 -5.99268 -4.01753 0.77527 1.39961 1.78674 2.84815 3.32383 3.40006 3.45533 3.59504 3.92329 4.47754 4.54514 4.69392 4.83360 5.08174 5.21384 5.30958 5.34289 5.41886 5.46507 5.59515 5.77487 5.81385 5.83312 5.96910 6.09958 6.22918 6.29821 6.32105 6.53551 6.93549 6.95875 7.52204 7.67481 7.91173 7.99729 8.05068 8.27750 8.40877 9.04564 9.62662 11.11698 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.005379 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.392998 B = 5204.144245 C = 6597.119921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.031 0.969 4 C 0.021 3.979 5 C -0.522 4.522 6 H 0.053 0.947 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.677 5.677 14 C 0.131 3.869 15 C 0.085 3.915 16 C -0.243 4.243 17 S 0.095 5.905 18 C 0.081 3.919 19 C -0.084 4.084 20 C -0.170 4.170 21 C -0.159 4.159 22 N -0.460 5.460 23 H 0.036 0.964 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.360 0.640 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.177 0.823 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 0.007 -20.183 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.049 0.951 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.312 5.312 14 C -0.001 4.001 15 C -0.046 4.046 16 C -0.382 4.382 17 S 0.349 5.651 18 C -0.197 4.197 19 C -0.106 4.106 20 C -0.208 4.208 21 C -0.197 4.197 22 N -0.174 5.174 23 H 0.055 0.945 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.181 0.819 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.194 0.806 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.729 -0.666 -20.745 20.769 hybrid contribution 1.452 1.008 1.198 2.135 sum 0.722 0.342 -19.547 19.563 Atomic orbital electron populations 1.21798 0.96643 1.01345 0.99508 1.21648 0.93348 0.96032 0.91211 0.95077 1.19282 0.95508 0.96172 0.90706 1.21232 0.92205 1.34334 1.08250 0.92858 1.24973 0.98229 0.95178 0.95684 1.69971 1.35370 1.35821 1.11965 0.86589 0.86064 0.77808 0.77919 1.19699 1.21074 1.20993 1.60659 1.35235 1.31390 1.03914 1.20464 0.99271 0.93085 0.87302 1.20308 0.86391 1.00023 0.97864 1.26787 1.04729 1.07647 0.99057 1.83640 0.99514 1.54310 1.27622 1.26029 0.98634 1.00303 0.94742 1.20400 0.91115 0.98496 1.00581 1.23131 1.03956 1.03595 0.90160 1.23139 1.03534 0.92343 1.00734 1.65993 1.18969 1.16106 1.16332 0.94516 0.92634 0.93213 0.95932 0.95622 0.93061 0.81901 0.90234 0.93917 0.80567 0.84985 0.88411 0.87417 0.87456 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.41 37.16 0.35 -2.08 16 2 C 0.09 1.85 2.59 -67.72 -0.18 1.67 16 3 H 0.03 0.68 7.80 -51.93 -0.40 0.27 16 4 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 5 C -0.52 -14.78 8.12 -34.44 -0.28 -15.06 16 6 H 0.05 1.50 7.49 -52.49 -0.39 1.11 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 9 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.68 -13.76 6.30 -107.99 -0.68 -14.44 16 14 C 0.13 2.26 5.92 -4.97 -0.03 2.23 16 15 C 0.09 1.41 6.25 -84.22 -0.53 0.89 16 16 C -0.24 -3.35 11.11 29.12 0.32 -3.03 16 17 S 0.09 1.12 21.94 -107.50 -2.36 -1.23 16 18 C 0.08 1.15 7.04 -13.46 -0.09 1.06 16 19 C -0.08 -0.95 6.33 -91.77 -0.58 -1.53 16 20 C -0.17 -1.38 10.01 -26.73 -0.27 -1.65 16 21 C -0.16 -1.48 10.23 -26.73 -0.27 -1.75 16 22 N -0.46 -7.97 10.53 -8.06 -0.08 -8.06 16 23 H 0.04 0.57 7.45 -51.93 -0.39 0.19 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.36 8.28 7.20 -39.29 -0.28 8.00 16 30 H 0.08 1.20 7.39 -51.93 -0.38 0.82 16 31 H 0.04 0.78 8.05 -51.93 -0.42 0.36 16 32 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.10 0.76 7.22 -51.93 -0.38 0.38 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -31.20 324.09 -9.89 -41.09 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.59 Total: 4.11 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.78 Total: -17.18 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.03 Total: -48.75 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.36 Total: -1.23 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.20 -9.89 -41.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708186651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.093 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds