Wall clock time and date at job start Mon Mar 30 2020 07:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.53000 * 109.47060 * 120.00319 * 2 1 3 5 5 C 1.50703 * 109.46801 * 184.99876 * 4 2 1 6 6 H 1.07998 * 120.00413 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99680 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99651 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47312 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47105 * 120.00272 * 9 7 5 12 12 H 1.48501 * 109.47040 * 239.99861 * 9 7 5 13 13 N 1.46896 * 109.46848 * 240.00028 * 2 1 3 14 14 C 1.46901 * 110.99913 * 85.00348 * 13 2 1 15 15 C 1.50703 * 109.47196 * 180.02562 * 14 13 2 16 16 C 1.33636 * 122.75279 * 95.01725 * 15 14 13 17 17 S 1.76204 * 107.92448 * 179.97438 * 16 15 14 18 18 C 1.70981 * 90.28184 * 0.02562 * 17 16 15 19 19 C 1.50693 * 124.91604 * 180.02562 * 18 17 16 20 20 C 1.53006 * 117.50069 * 8.59119 * 19 18 17 21 21 C 1.53002 * 60.00052 * 252.51426 * 20 19 18 22 22 N 1.29027 * 110.16615 * 359.72776 * 18 17 16 23 23 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 26 26 H 1.09002 * 109.47069 * 304.99600 * 4 2 1 27 27 H 1.08991 * 109.47625 * 64.99919 * 4 2 1 28 28 H 0.96998 * 119.99928 * 179.97438 * 8 7 5 29 29 H 1.00902 * 110.99924 * 208.95338 * 13 2 1 30 30 H 1.09007 * 109.47248 * 299.99411 * 14 13 2 31 31 H 1.08990 * 109.47767 * 59.99672 * 14 13 2 32 32 H 1.08002 * 126.03913 * 0.02562 * 16 15 14 33 33 H 1.08995 * 115.55249 * 154.30403 * 19 18 17 34 34 H 1.08998 * 117.49446 * 0.02562 * 20 19 18 35 35 H 1.09004 * 117.49969 * 145.02145 * 20 19 18 36 36 H 1.09003 * 117.49828 * 252.50694 * 21 20 19 37 37 H 1.09004 * 117.51878 * 107.48147 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1928 2.3582 8 7 3.5763 -1.8362 3.3004 9 14 6.0920 -1.0603 2.4372 10 1 6.5836 -0.2899 1.2667 11 1 6.4861 -0.3641 3.6883 12 1 6.6862 -2.4211 2.4198 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3468 15 6 2.5872 -0.5217 -3.5561 16 6 1.7705 -1.0667 -4.4626 17 16 2.7659 -1.8321 -5.6988 18 6 4.1814 -1.3438 -4.8732 19 6 5.5885 -1.6355 -5.3269 20 6 5.7699 -2.2478 -6.7173 21 6 5.9948 -3.1037 -5.4692 22 7 3.8703 -0.6841 -3.8089 23 1 -0.3635 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 4.0607 -2.2430 4.0358 29 1 2.9172 -1.1205 -1.0287 30 1 1.0870 0.6164 -2.5525 31 1 2.7587 1.0462 -2.1183 32 1 0.6909 -1.0416 -4.4417 33 1 6.3484 -0.9342 -4.9824 34 1 4.8714 -2.4392 -7.3040 35 1 6.6493 -1.9492 -7.2879 36 1 7.0221 -3.3683 -5.2187 37 1 5.2443 -3.8587 -5.2343 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708186651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:47 Heat of formation + Delta-G solvation = 37.038643 kcal Electronic energy + Delta-G solvation = -17503.507532 eV Core-core repulsion = 14793.048407 eV Total energy + Delta-G solvation = -2710.459125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98079 -38.45342 -37.81748 -34.90730 -32.97474 -30.59621 -29.30283 -27.04441 -26.01053 -24.81371 -23.35741 -22.07863 -21.18112 -20.69872 -18.62623 -18.48814 -17.21347 -16.80604 -16.47472 -16.23746 -15.49969 -15.40782 -14.92725 -14.67460 -14.33253 -13.65903 -13.57147 -13.29321 -13.25028 -13.11502 -12.85926 -12.62821 -12.50701 -12.40689 -12.11114 -12.08108 -11.77492 -11.50712 -11.27233 -11.03844 -10.61002 -10.59265 -10.30523 -9.62672 -9.25265 -8.22760 -6.32538 -0.26444 0.40618 0.73100 1.34424 1.35471 1.48436 1.71302 2.37288 2.77893 3.05718 3.09253 3.54640 3.77417 3.90967 4.01009 4.11176 4.24953 4.31345 4.44268 4.52110 4.62288 4.70655 4.70918 4.84814 4.90943 5.01552 5.03203 5.15550 5.16568 5.20020 5.33171 5.46695 5.51675 5.81394 6.17870 6.33592 6.47491 6.82109 6.85506 7.36018 8.88956 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.005379 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.392998 B = 5204.144245 C = 6597.119921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.093 3.907 3 H 0.026 0.974 4 C 0.028 3.972 5 C -0.534 4.534 6 H 0.049 0.951 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.275 1.275 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.136 3.864 15 C 0.055 3.945 16 C -0.246 4.246 17 S 0.166 5.834 18 C 0.064 3.936 19 C -0.116 4.116 20 C -0.143 4.143 21 C -0.159 4.159 22 N -0.509 5.509 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.000 1.000 27 H -0.003 1.003 28 H 0.264 0.736 29 H 0.340 0.660 30 H 0.104 0.896 31 H 0.025 0.975 32 H 0.199 0.801 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -0.216 -22.588 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.016 4.016 3 H 0.044 0.956 4 C -0.009 4.009 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.203 1.203 13 N -0.309 5.309 14 C 0.004 3.996 15 C -0.076 4.076 16 C -0.386 4.386 17 S 0.421 5.579 18 C -0.213 4.213 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.198 4.198 22 N -0.224 5.224 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.018 0.982 27 H 0.016 0.984 28 H 0.073 0.927 29 H 0.158 0.842 30 H 0.123 0.877 31 H 0.043 0.957 32 H 0.216 0.784 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.139 0.861 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.482 -0.880 -23.173 23.195 hybrid contribution 1.360 1.036 1.860 2.526 sum 0.878 0.155 -21.313 21.332 Atomic orbital electron populations 1.21700 0.93705 1.01618 1.01326 1.21497 0.95614 0.94802 0.89689 0.95647 1.19132 0.94627 0.94765 0.92387 1.21517 0.93490 1.34103 1.08111 0.93258 1.25826 1.03149 0.94796 0.95322 1.70083 1.37349 1.36697 1.12644 0.85523 0.80149 0.78030 0.78106 1.19445 1.20092 1.20275 1.60720 1.33809 1.32040 1.04295 1.20469 1.00287 0.92128 0.86696 1.20190 0.86920 1.01956 0.98495 1.27133 1.06009 1.06441 0.98988 1.83294 0.96931 1.52358 1.25294 1.26543 1.00760 0.99598 0.94397 1.20550 0.89827 0.99744 1.03646 1.23264 1.05068 1.00811 0.88898 1.23241 1.04087 0.90892 1.01537 1.65973 1.19833 1.18270 1.18372 0.91461 0.93103 0.92624 0.98167 0.98442 0.92737 0.84180 0.87746 0.95669 0.78356 0.85688 0.87708 0.85041 0.86149 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 9.41 71.98 0.68 -3.72 16 2 C 0.09 4.03 2.59 44.92 0.12 4.15 16 3 H 0.03 1.12 7.80 -2.39 -0.02 1.10 16 4 C 0.03 1.53 4.57 29.85 0.14 1.66 16 5 C -0.53 -31.12 8.12 25.60 0.21 -30.91 16 6 H 0.05 2.85 7.49 -2.91 -0.02 2.83 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 9 Si 0.96 46.04 29.54 68.60 2.03 48.07 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 N -0.68 -27.87 6.30 -495.58 -3.12 -30.99 16 14 C 0.14 4.68 5.92 85.56 0.51 5.18 16 15 C 0.06 1.81 6.25 41.52 0.26 2.07 16 16 C -0.25 -6.35 11.11 66.78 0.74 -5.61 16 17 S 0.17 3.56 21.94 -56.49 -1.24 2.32 16 18 C 0.06 1.77 7.04 88.52 0.62 2.39 16 19 C -0.12 -2.49 6.33 -11.54 -0.07 -2.57 16 20 C -0.14 -1.92 10.01 30.60 0.31 -1.61 16 21 C -0.16 -2.67 10.23 30.60 0.31 -2.36 16 22 N -0.51 -17.83 10.53 -179.40 -1.89 -19.71 16 23 H 0.07 1.94 7.45 -2.39 -0.02 1.92 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.34 16.23 7.20 -89.69 -0.65 15.58 16 30 H 0.10 2.99 7.39 -2.38 -0.02 2.97 16 31 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 32 H 0.20 4.02 8.06 -2.91 -0.02 4.00 16 33 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.10 1.26 7.22 -2.39 -0.02 1.25 16 35 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 Total: -1.00 -69.14 324.09 0.75 -68.38 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.41 Total: 19.36 kcal Atomic # 6 Polarization: -34.69 SS G_CDS: 4.28 Total: -30.42 kcal Atomic # 7 Polarization: -103.00 SS G_CDS: -4.73 Total: -107.72 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.24 Total: 2.32 kcal Total: -69.14 0.75 -68.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708186651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.421 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds