Wall clock time and date at job start Mon Mar 30 2020 07:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47752 * 2 1 4 4 C 1.50706 * 109.47281 * 240.00258 * 2 1 3 5 5 H 1.08002 * 120.00145 * 245.70545 * 4 2 1 6 6 C 1.37873 * 120.00164 * 65.70304 * 4 2 1 7 7 N 1.31517 * 119.99746 * 5.26981 * 6 4 2 8 8 Si 1.86797 * 120.00377 * 185.54646 * 6 4 2 9 9 H 1.48499 * 109.47501 * 179.72279 * 8 6 4 10 10 H 1.48498 * 109.47049 * 299.72785 * 8 6 4 11 11 H 1.48501 * 109.47147 * 59.72485 * 8 6 4 12 12 N 1.46895 * 109.47116 * 120.00511 * 2 1 3 13 13 C 1.46843 * 111.00199 * 60.94431 * 12 2 1 14 14 C 1.53042 * 109.52482 * 185.84283 * 13 12 2 15 15 C 1.53123 * 109.27608 * 300.82025 * 14 13 12 16 16 C 1.53112 * 109.16035 * 57.65411 * 15 14 13 17 17 C 1.46847 * 111.00247 * 185.15647 * 12 2 1 18 18 H 1.09007 * 109.46296 * 294.17424 * 17 12 2 19 19 C 1.50694 * 109.46197 * 54.15278 * 17 12 2 20 20 N 1.29037 * 124.91536 * 229.84437 * 19 17 12 21 21 C 1.31783 * 117.12285 * 179.97438 * 20 19 17 22 22 C 1.33644 * 114.50329 * 0.02562 * 21 20 19 23 23 S 1.70979 * 124.91749 * 49.54169 * 19 17 12 24 24 H 1.09005 * 109.47584 * 174.85346 * 1 2 3 25 25 H 1.09000 * 109.47130 * 294.85758 * 1 2 3 26 26 H 1.09005 * 109.47174 * 54.85685 * 1 2 3 27 27 H 0.96998 * 119.99872 * 355.43973 * 7 6 4 28 28 H 1.08997 * 109.46778 * 305.85704 * 13 12 2 29 29 H 1.08998 * 109.46414 * 65.83042 * 13 12 2 30 30 H 1.09001 * 109.50581 * 180.88349 * 14 13 12 31 31 H 1.08998 * 109.53756 * 60.77797 * 14 13 12 32 32 H 1.08998 * 109.52163 * 297.74860 * 15 14 13 33 33 H 1.09003 * 109.57179 * 177.59496 * 15 14 13 34 34 H 1.09007 * 109.50314 * 182.40505 * 16 15 14 35 35 H 1.09002 * 109.50688 * 62.28883 * 16 15 14 36 36 H 1.07998 * 122.75050 * 179.97438 * 21 20 19 37 37 H 1.07995 * 126.03928 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5751 -1.6391 -1.1342 6 6 1.7989 -0.1747 -2.4793 7 7 1.2301 1.0056 -2.5927 8 14 2.2836 -1.1288 -4.0104 9 1 1.9226 -0.3437 -5.2180 10 1 3.7483 -1.3731 -3.9984 11 1 1.5652 -2.4283 -4.0319 12 7 2.0196 -0.6926 1.1993 13 6 1.5673 -2.0894 1.2219 14 6 1.9707 -2.7363 2.5490 15 6 3.4930 -2.6706 2.7012 16 6 3.9429 -1.2090 2.6257 17 6 3.4823 -0.6064 1.2965 18 1 3.9342 -1.1577 0.4719 19 6 3.9059 0.8381 1.2267 20 7 4.8233 1.3018 0.4468 21 6 5.0702 2.5947 0.5118 22 6 4.3196 3.2584 1.3962 23 16 3.2354 2.1010 2.1642 24 1 -0.3634 -1.0235 -0.0922 25 1 -0.3633 0.4320 0.9325 26 1 -0.3634 0.5916 -0.8404 27 1 0.9148 1.4700 -1.8016 28 1 0.4828 -2.1219 1.1171 29 1 2.0282 -2.6338 0.3977 30 1 1.6487 -3.7776 2.5590 31 1 1.4992 -2.2015 3.3734 32 1 3.9641 -3.2386 1.8990 33 1 3.7822 -3.0916 3.6641 34 1 5.0299 -1.1591 2.6907 35 1 3.5024 -0.6495 3.4510 36 1 5.8183 3.0781 -0.0989 37 1 4.3663 4.3178 1.6009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710560168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:12 Heat of formation + Delta-G solvation = 41.778322 kcal Electronic energy + Delta-G solvation = -19223.439193 eV Core-core repulsion = 16513.185596 eV Total energy + Delta-G solvation = -2710.253597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.50361 -38.22571 -34.63616 -32.02168 -31.60520 -28.84952 -28.34445 -25.03137 -24.76918 -23.53842 -22.10001 -20.24618 -19.51429 -19.14784 -17.60091 -16.48095 -15.33312 -15.07129 -14.52682 -14.00786 -13.91371 -13.76453 -13.66606 -13.01554 -12.77116 -12.65345 -12.39063 -11.96806 -11.40556 -11.02276 -10.98553 -10.79296 -10.66027 -10.63382 -10.52085 -10.38693 -10.08975 -9.85581 -9.68987 -9.04610 -9.02754 -8.82427 -8.39628 -8.18293 -7.19383 -6.29892 -4.05831 1.25015 1.92797 2.35377 3.39765 3.43524 3.45666 3.63107 4.43249 4.54730 4.95579 5.18748 5.30200 5.33873 5.40277 5.53852 5.68557 5.71560 5.90529 5.95507 6.01944 6.16959 6.23004 6.24735 6.36917 6.47449 6.57243 6.61699 6.68012 6.75170 6.80086 6.86145 7.28606 7.33533 7.80709 8.07732 8.20067 8.33597 8.52849 8.85413 9.66524 11.04360 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.010175 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.342247 B = 2751.161336 C = 3705.326846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.191 3.809 3 H 0.034 0.966 4 C -0.617 4.617 5 H 0.050 0.950 6 C 0.030 3.970 7 N -0.909 5.909 8 Si 1.059 2.941 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.289 1.289 12 N -0.526 5.526 13 C 0.063 3.937 14 C -0.119 4.119 15 C -0.115 4.115 16 C -0.108 4.108 17 C 0.163 3.837 18 H 0.077 0.923 19 C 0.098 3.902 20 N -0.474 5.474 21 C 0.043 3.957 22 C -0.288 4.288 23 S 0.129 5.871 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.056 0.944 27 H 0.270 0.730 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.167 0.833 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -1.369 11.159 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.084 3.916 3 H 0.052 0.948 4 C -0.656 4.656 5 H 0.068 0.932 6 C -0.176 4.176 7 N -0.545 5.545 8 Si 0.888 3.112 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.216 1.216 12 N -0.251 5.251 13 C -0.065 4.065 14 C -0.157 4.157 15 C -0.153 4.153 16 C -0.147 4.147 17 C 0.051 3.949 18 H 0.095 0.905 19 C -0.181 4.181 20 N -0.188 5.188 21 C -0.109 4.109 22 C -0.427 4.427 23 S 0.383 5.617 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.184 0.816 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.213 -1.335 10.307 10.878 hybrid contribution 0.942 0.115 0.120 0.957 sum 4.155 -1.220 10.427 11.290 Atomic orbital electron populations 1.21912 0.98332 1.00201 0.98962 1.19452 0.91618 0.94560 0.85965 0.94807 1.22347 1.39717 1.10523 0.93011 0.93232 1.25583 0.94856 0.96046 1.01066 1.70801 1.37727 1.12166 1.33847 0.83679 0.76220 0.75216 0.76062 1.20855 1.21537 1.21556 1.62475 1.06628 1.14175 1.41838 1.21930 1.00509 0.88810 0.95301 1.21670 0.95385 0.99726 0.98919 1.21521 0.96635 0.95955 1.01181 1.21683 0.99999 0.96299 0.96747 1.19929 0.90890 0.86388 0.97676 0.90543 1.26915 0.95171 1.00807 0.95165 1.66254 1.17896 1.13484 1.21145 1.21697 1.01332 0.88758 0.99075 1.27012 1.04217 1.04679 1.06797 1.83847 1.37137 1.00014 1.40659 0.94101 0.95560 0.92502 0.91768 0.90784 0.93917 0.92261 0.91727 0.92166 0.92203 0.91917 0.91398 0.81578 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.50 37.15 0.32 -2.83 16 2 C 0.19 4.63 1.71 -68.87 -0.12 4.51 16 3 H 0.03 0.91 5.76 -51.93 -0.30 0.62 16 4 C -0.62 -16.70 7.11 -34.44 -0.24 -16.94 16 5 H 0.05 1.36 5.86 -52.49 -0.31 1.06 16 6 C 0.03 0.85 5.29 -17.82 -0.09 0.75 16 7 N -0.91 -27.16 13.20 55.43 0.73 -26.43 16 8 Si 1.06 25.62 29.91 -169.99 -5.08 20.54 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.53 -10.75 4.36 -221.53 -0.97 -11.72 16 13 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 14 C -0.12 -1.73 6.09 -26.65 -0.16 -1.89 16 15 C -0.12 -1.60 6.00 -26.61 -0.16 -1.76 16 16 C -0.11 -1.69 5.35 -26.65 -0.14 -1.83 16 17 C 0.16 3.22 2.01 -68.88 -0.14 3.08 16 18 H 0.08 1.74 7.09 -51.93 -0.37 1.37 16 19 C 0.10 1.98 4.57 -13.45 -0.06 1.92 16 20 N -0.47 -10.07 10.54 -11.86 -0.13 -10.19 16 21 C 0.04 0.78 11.35 -19.18 -0.22 0.56 16 22 C -0.29 -4.63 11.37 29.12 0.33 -4.30 16 23 S 0.13 2.24 22.49 -107.50 -2.42 -0.17 16 24 H 0.04 0.91 6.58 -51.93 -0.34 0.57 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.42 6.17 -51.93 -0.32 1.10 16 27 H 0.27 8.06 5.61 -40.82 -0.23 7.83 16 28 H 0.07 1.39 6.15 -51.93 -0.32 1.07 16 29 H 0.04 0.88 6.52 -51.93 -0.34 0.54 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.17 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.17 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 298.81 15.07 4.50 4.50 Total: -1.00 -30.40 298.81 -9.19 -39.60 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.12 Total: 1.46 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -0.71 Total: -17.58 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.36 Total: -48.34 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.42 Total: -0.17 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.40 -9.19 -39.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710560168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.375 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds