Wall clock time and date at job start Mon Mar 30 2020 07:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47752 * 2 1 4 4 C 1.50706 * 109.47281 * 240.00258 * 2 1 3 5 5 H 1.08002 * 120.00145 * 245.70545 * 4 2 1 6 6 C 1.37873 * 120.00164 * 65.70304 * 4 2 1 7 7 N 1.31517 * 119.99746 * 5.26981 * 6 4 2 8 8 Si 1.86797 * 120.00377 * 185.54646 * 6 4 2 9 9 H 1.48499 * 109.47501 * 179.72279 * 8 6 4 10 10 H 1.48498 * 109.47049 * 299.72785 * 8 6 4 11 11 H 1.48501 * 109.47147 * 59.72485 * 8 6 4 12 12 N 1.46895 * 109.47116 * 120.00511 * 2 1 3 13 13 C 1.46843 * 111.00199 * 60.94431 * 12 2 1 14 14 C 1.53042 * 109.52482 * 185.84283 * 13 12 2 15 15 C 1.53123 * 109.27608 * 300.82025 * 14 13 12 16 16 C 1.53112 * 109.16035 * 57.65411 * 15 14 13 17 17 C 1.46847 * 111.00247 * 185.15647 * 12 2 1 18 18 H 1.09007 * 109.46296 * 294.17424 * 17 12 2 19 19 C 1.50694 * 109.46197 * 54.15278 * 17 12 2 20 20 N 1.29037 * 124.91536 * 229.84437 * 19 17 12 21 21 C 1.31783 * 117.12285 * 179.97438 * 20 19 17 22 22 C 1.33644 * 114.50329 * 0.02562 * 21 20 19 23 23 S 1.70979 * 124.91749 * 49.54169 * 19 17 12 24 24 H 1.09005 * 109.47584 * 174.85346 * 1 2 3 25 25 H 1.09000 * 109.47130 * 294.85758 * 1 2 3 26 26 H 1.09005 * 109.47174 * 54.85685 * 1 2 3 27 27 H 0.96998 * 119.99872 * 355.43973 * 7 6 4 28 28 H 1.08997 * 109.46778 * 305.85704 * 13 12 2 29 29 H 1.08998 * 109.46414 * 65.83042 * 13 12 2 30 30 H 1.09001 * 109.50581 * 180.88349 * 14 13 12 31 31 H 1.08998 * 109.53756 * 60.77797 * 14 13 12 32 32 H 1.08998 * 109.52163 * 297.74860 * 15 14 13 33 33 H 1.09003 * 109.57179 * 177.59496 * 15 14 13 34 34 H 1.09007 * 109.50314 * 182.40505 * 16 15 14 35 35 H 1.09002 * 109.50688 * 62.28883 * 16 15 14 36 36 H 1.07998 * 122.75050 * 179.97438 * 21 20 19 37 37 H 1.07995 * 126.03928 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5751 -1.6391 -1.1342 6 6 1.7989 -0.1747 -2.4793 7 7 1.2301 1.0056 -2.5927 8 14 2.2836 -1.1288 -4.0104 9 1 1.9226 -0.3437 -5.2180 10 1 3.7483 -1.3731 -3.9984 11 1 1.5652 -2.4283 -4.0319 12 7 2.0196 -0.6926 1.1993 13 6 1.5673 -2.0894 1.2219 14 6 1.9707 -2.7363 2.5490 15 6 3.4930 -2.6706 2.7012 16 6 3.9429 -1.2090 2.6257 17 6 3.4823 -0.6064 1.2965 18 1 3.9342 -1.1577 0.4719 19 6 3.9059 0.8381 1.2267 20 7 4.8233 1.3018 0.4468 21 6 5.0702 2.5947 0.5118 22 6 4.3196 3.2584 1.3962 23 16 3.2354 2.1010 2.1642 24 1 -0.3634 -1.0235 -0.0922 25 1 -0.3633 0.4320 0.9325 26 1 -0.3634 0.5916 -0.8404 27 1 0.9148 1.4700 -1.8016 28 1 0.4828 -2.1219 1.1171 29 1 2.0282 -2.6338 0.3977 30 1 1.6487 -3.7776 2.5590 31 1 1.4992 -2.2015 3.3734 32 1 3.9641 -3.2386 1.8990 33 1 3.7822 -3.0916 3.6641 34 1 5.0299 -1.1591 2.6907 35 1 3.5024 -0.6495 3.4510 36 1 5.8183 3.0781 -0.0989 37 1 4.3663 4.3178 1.6009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710560168.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:12 Heat of formation + Delta-G solvation = 22.154426 kcal Electronic energy + Delta-G solvation = -19224.290149 eV Core-core repulsion = 16513.185596 eV Total energy + Delta-G solvation = -2711.104553 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.99056 -39.71576 -36.39730 -33.70236 -33.15414 -30.23524 -30.09543 -26.97996 -26.33651 -25.08437 -23.48721 -21.95883 -21.09833 -20.50409 -19.23562 -18.25036 -16.90849 -16.54255 -16.09486 -15.68459 -15.47146 -15.35411 -15.15890 -14.47443 -14.44387 -14.05272 -13.91540 -13.44423 -13.16596 -12.95467 -12.60612 -12.45832 -12.34202 -12.14954 -12.05669 -12.03046 -11.61463 -11.45312 -11.14131 -10.99217 -10.51503 -10.47121 -10.23364 -9.66023 -9.01308 -8.50442 -6.28282 -0.15235 0.55407 0.94687 1.45046 1.51609 1.69835 1.96277 2.53108 2.97793 3.21788 3.46255 3.92967 4.03942 4.11478 4.33021 4.35630 4.41020 4.49004 4.60056 4.60893 4.74067 4.82818 4.85622 4.91596 5.02123 5.06590 5.11509 5.20319 5.22358 5.26375 5.37742 5.48819 5.50691 5.91558 6.06408 6.41292 6.50452 6.63365 6.93367 7.50054 8.80876 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.014879 B = 0.010175 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.342247 B = 2751.161336 C = 3705.326846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.196 3.804 3 H 0.008 0.992 4 C -0.612 4.612 5 H 0.038 0.962 6 C -0.019 4.019 7 N -0.935 5.935 8 Si 1.098 2.902 9 H -0.285 1.285 10 H -0.285 1.285 11 H -0.269 1.269 12 N -0.516 5.516 13 C 0.059 3.941 14 C -0.109 4.109 15 C -0.112 4.112 16 C -0.101 4.101 17 C 0.165 3.835 18 H 0.034 0.966 19 C 0.063 3.937 20 N -0.513 5.513 21 C 0.015 3.985 22 C -0.269 4.269 23 S 0.158 5.842 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.070 0.930 29 H 0.015 0.985 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.189 0.811 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -1.753 13.045 13.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.088 3.912 3 H 0.026 0.974 4 C -0.651 4.651 5 H 0.056 0.944 6 C -0.219 4.219 7 N -0.573 5.573 8 Si 0.922 3.078 9 H -0.210 1.210 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.241 5.241 13 C -0.069 4.069 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.140 4.140 17 C 0.053 3.947 18 H 0.051 0.949 19 C -0.214 4.214 20 N -0.229 5.229 21 C -0.135 4.135 22 C -0.409 4.409 23 S 0.411 5.589 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.034 0.966 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.205 0.795 37 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 3.331 -1.742 12.217 12.782 hybrid contribution 0.934 0.293 -0.419 1.065 sum 4.265 -1.449 11.798 12.628 Atomic orbital electron populations 1.21746 0.97456 1.00066 0.98990 1.19231 0.92138 0.93290 0.86556 0.97445 1.22601 1.38425 1.09835 0.94249 0.94423 1.26740 0.94817 0.96262 1.04089 1.70902 1.39815 1.13256 1.33343 0.83171 0.76352 0.75006 0.73287 1.21034 1.21078 1.19475 1.62478 1.07371 1.15085 1.39185 1.22038 1.00021 0.87636 0.97158 1.21624 0.95932 1.00796 0.96331 1.21547 0.95995 0.94633 1.02798 1.21672 1.00517 0.97373 0.94409 1.19963 0.89732 0.86520 0.98525 0.94854 1.26993 0.96140 1.01772 0.96510 1.66239 1.19049 1.15424 1.22172 1.22104 1.02822 0.88118 1.00503 1.27488 1.02198 1.06201 1.04969 1.83588 1.36707 0.99062 1.39516 0.93767 0.93448 0.94881 0.92873 0.91167 0.96621 0.89806 0.90530 0.93018 0.88657 0.91173 0.90246 0.79462 0.77507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.50 71.98 0.61 -5.18 16 2 C 0.20 9.66 1.71 44.17 0.08 9.74 16 3 H 0.01 0.42 5.76 -2.39 -0.01 0.41 16 4 C -0.61 -34.00 7.11 25.60 0.18 -33.82 16 5 H 0.04 2.14 5.86 -2.91 -0.02 2.13 16 6 C -0.02 -1.12 5.29 84.65 0.45 -0.67 16 7 N -0.93 -57.24 13.20 21.45 0.28 -56.96 16 8 Si 1.10 52.44 29.91 68.60 2.05 54.49 16 9 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 N -0.52 -21.08 4.36 -854.78 -3.72 -24.81 16 13 C 0.06 2.17 4.80 86.33 0.41 2.59 16 14 C -0.11 -2.88 6.09 30.65 0.19 -2.69 16 15 C -0.11 -2.82 6.00 30.67 0.18 -2.63 16 16 C -0.10 -2.99 5.35 30.64 0.16 -2.83 16 17 C 0.16 6.55 2.01 44.19 0.09 6.64 16 18 H 0.03 1.60 7.09 -2.38 -0.02 1.58 16 19 C 0.06 2.58 4.57 88.52 0.40 2.98 16 20 N -0.51 -22.17 10.54 -191.44 -2.02 -24.19 16 21 C 0.02 0.54 11.35 83.66 0.95 1.49 16 22 C -0.27 -8.17 11.37 66.78 0.76 -7.41 16 23 S 0.16 5.27 22.49 -56.49 -1.27 4.00 16 24 H 0.04 1.98 6.58 -2.38 -0.02 1.96 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.03 1.67 6.17 -2.38 -0.01 1.66 16 27 H 0.26 16.01 5.61 -92.71 -0.52 15.49 16 28 H 0.07 2.58 6.15 -2.39 -0.01 2.57 16 29 H 0.02 0.65 6.52 -2.39 -0.02 0.63 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.19 5.51 8.06 -2.91 -0.02 5.49 16 37 H 0.21 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -67.80 298.81 1.10 -66.70 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 1.31 Total: 12.57 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 4.47 Total: -31.80 kcal Atomic # 7 Polarization: -100.50 SS G_CDS: -5.46 Total: -105.96 kcal Atomic # 14 Polarization: 52.44 SS G_CDS: 2.05 Total: 54.49 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.27 Total: 4.00 kcal Total: -67.80 1.10 -66.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710560168.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.852 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds